RLG00000019971

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0012679
Physical Location & Seq
Forward (+)
59435235 .. 59437021
1787 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019971

Sequence Viewer

Length: 915 bp
ATGGGTCGAATACATACCGTTTTAACCGACCCGACCCGAAGCTCTAATATTGCGTACGACGTGTCGTTGATATCAGCTCTAAACAGCCCTAAACATCGCGTTCTGCCGTTCGAGCACTCCACTCCCAATTTCGAAACCCTAATCGAGCCTCTCTCCTCCTCCATCGAAGACTCCCAGGCCCCAGCCTCTCAACCTCGCACTCCTCTCTGCTCTCCTCCATCGAAGACTCTCAGCCTCTCACTCTCACAGTCTCACCCTAATCGAGCCTCTCTCCTCCTCCATCGAAGACTCCCAGGCCCCAGCCTCTCAACCTCGCACTCCTCTCTGCTCTCCTCCATCGAAGACTCTCAACCTCGCACTCCTCTCTGCTCTCCTCCATCGAAGACTCTCAGCCTCTCGAAGAACCGAGACCGAAACAACAGCTCAACCTACTCGGCTCTCACCCCTCTCTGCCCTCCATCGAGGAATCGATTCTTCTACTCGTTTCTTCAACTCGATTCTTCAAGCCTCCCACTCCGAATCGATGGGAAAACTGGGATTATTGATTATGCCTCATTTGTGGTTGTCTGCGGGTCACAAGGTCACAAATGGTTTGTAGAAAAAGCCAAATTTAAAATCGGTAAGAAGAAAGCTCAAGGACAGAAAGAAGGAGATTCTAGCTTAGTTGTTTCTTCAACTGGTACCTCTCCCTCAATCCCTGACAGAGCTGAAGAAGATGTCACGGATGGAGGAGCTCCAGCTTCCTCATTTGACAAGGGTCTGCCTAACCACTGCCTAACCTCAGCCTCTTCAACCTCTTGTCCTCCTCCAAAAGCTAAGGGAAAGAATGGTATTGGAACTAATGATGAAGTTGTTCAACTCAGTGAAGATGACTCCGAGGATGAAATGGTGTCTGATGATTCAGAAAACAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

305

Amino Acids

32.59

Weight (kDa)

6.45

Isoelectric Point (pI)

63.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 680
AccB1I GGYRCC 1 cut(s) 680
AccII CGCG 1 cut(s) 99
AciI CCGC 1 cut(s) 570
AcsI RAATTY 1 cut(s) 608
AcuI CTGAAG 1 cut(s) 729
AfaI GTAC 2 cut(s) 56, 682
AflIII ACRYGT 1 cut(s) 60
AgsI TTSAA 5 cut(s) 491, 504, 675, 792, 857
AjiI CACGTC 1 cut(s) 61
AjnI CCWGG 2 cut(s) 174, 292
AluBI AGCT 9 cut(s) 42, 77, 423, 632, 660, 707, 734, 740, 815
AluI AGCT 9 cut(s) 42, 77, 423, 632, 660, 707, 734, 740, 815
Alw21I GWGCWC 2 cut(s) 117, 736
Alw26I GTCTC 2 cut(s) 255, 402
AoxI GGCC 2 cut(s) 177, 295
ApoI RAATTY 1 cut(s) 608
Asp700I GAANNNNTTC 2 cut(s) 470, 852
Asp718I GGTACC 1 cut(s) 680
AspS9I GGNCC 2 cut(s) 178, 296
AsuHPI GGTGA 2 cut(s) 245, 433
AsuII TTCGAA 1 cut(s) 132
BanI GGYRCC 1 cut(s) 680
BanII GRGCYC 1 cut(s) 736
BbsI GAAGAC 5 cut(s) 174, 230, 292, 348, 389
Bbv12I GWGCWC 2 cut(s) 117, 736
BbvCI CCTCAGC 1 cut(s) 781
BccI CCATC 8 cut(s) 170, 226, 288, 344, 385, 466, 518, 719
BceAI ACGGC 1 cut(s) 91
BciT130I CCWGG 2 cut(s) 176, 294
BcoDI GTCTC 2 cut(s) 255, 402
BfaI CTAG 1 cut(s) 657
Bme1390I CCNGG 2 cut(s) 176, 294
BmgBI CACGTC 1 cut(s) 61
BmgT120I GGNCC 2 cut(s) 178, 296
BmiI GGNNCC 3 cut(s) 180, 298, 682
BmrFI CCNGG 2 cut(s) 176, 294
BmrI ACTGGG 1 cut(s) 543
BmuI ACTGGG 1 cut(s) 543
BoxI GACNNNNGTC 1 cut(s) 756
BpiI GAAGAC 5 cut(s) 174, 230, 292, 348, 389
BplI GAGNNNNNCTC 4 cut(s) 137, 169, 255, 287
BpmI CTGGAG 1 cut(s) 720
Bpu10I CCTNAGC 2 cut(s) 781, 816
Bpu14I TTCGAA 1 cut(s) 132
BpuEI CTTGAG 1 cut(s) 618
Bsa29I ATCGAT 2 cut(s) 469, 522
BsaI GGTCTC 1 cut(s) 402
BsaJI CCNNGG 3 cut(s) 174, 292, 876
Bse1I ACTGG 2 cut(s) 538, 682
BseBI CCWGG 2 cut(s) 176, 294
BseCI ATCGAT 2 cut(s) 469, 522
BseDI CCNNGG 3 cut(s) 174, 292, 876
BseGI GGATG 2 cut(s) 730, 886
BseMII CTCAG 4 cut(s) 244, 403, 795, 874
BseNI ACTGG 2 cut(s) 538, 682
BseYI CCCAGC 2 cut(s) 181, 299
Bsh1236I CGCG 1 cut(s) 99
BshFI GGCC 2 cut(s) 179, 297
BshNI GGYRCC 1 cut(s) 680
BshVI ATCGAT 2 cut(s) 469, 522
BsiHKAI GWGCWC 2 cut(s) 117, 736
BsiWI CGTACG 1 cut(s) 54
BsmAI GTCTC 2 cut(s) 255, 402
BsnI GGCC 2 cut(s) 179, 297
Bso31I GGTCTC 1 cut(s) 402
Bsp119I TTCGAA 1 cut(s) 132
Bsp1286I GDGCHC 2 cut(s) 117, 736
BspACI CCGC 1 cut(s) 570
BspANI GGCC 2 cut(s) 179, 297
BspCNI CTCAG 4 cut(s) 243, 402, 794, 873
BspDI ATCGAT 2 cut(s) 469, 522
BspFNI CGCG 1 cut(s) 99
BspLI GGNNCC 3 cut(s) 180, 298, 682
BspT104I TTCGAA 1 cut(s) 132
BspT107I GGYRCC 1 cut(s) 680
BspTNI GGTCTC 1 cut(s) 402
BsrI ACTGG 2 cut(s) 538, 682
BssECI CCNNGG 3 cut(s) 174, 292, 876
Bst2UI CCWGG 2 cut(s) 176, 294
Bst4CI ACNGT 3 cut(s) 19, 249, 911
Bst6I CTCTTC 1 cut(s) 793
BstBI TTCGAA 1 cut(s) 132
BstDEI CTNAG 6 cut(s) 230, 389, 661, 781, 816, 860
BstF5I GGATG 2 cut(s) 730, 886
BstFNI CGCG 1 cut(s) 99
BstMAI GTCTC 2 cut(s) 255, 402
BstMWI GCNNNNNNNGC 1 cut(s) 112
BstNI CCWGG 2 cut(s) 176, 294
BstPAI GACNNNNGTC 1 cut(s) 756
BstSCI CCNGG 2 cut(s) 174, 292
BstUI CGCG 1 cut(s) 99
BstV2I GAAGAC 5 cut(s) 174, 230, 292, 348, 389
Bsu15I ATCGAT 2 cut(s) 469, 522
BsuRI GGCC 2 cut(s) 179, 297
BsuTUI ATCGAT 2 cut(s) 469, 522
BtgZI GCGATG 1 cut(s) 80
BtrI CACGTC 1 cut(s) 61
BtsCI GGATG 2 cut(s) 730, 886
BtsI GCAGTG 1 cut(s) 769
BtsIMutI CAGTG 2 cut(s) 769, 868
Cfr13I GGNCC 2 cut(s) 178, 296
ClaI ATCGAT 2 cut(s) 469, 522
Csp6I GTAC 2 cut(s) 55, 681
CviQI GTAC 2 cut(s) 55, 681
DdeI CTNAG 6 cut(s) 230, 389, 661, 781, 816, 860
DraI TTTAAA 1 cut(s) 613
Eam1104I CTCTTC 1 cut(s) 793
EarI CTCTTC 1 cut(s) 793
Ecl136II GAGCTC 1 cut(s) 734
Eco24I GRGCYC 1 cut(s) 736
Eco31I GGTCTC 1 cut(s) 402
Eco32I GATATC 1 cut(s) 72
Eco53kI GAGCTC 1 cut(s) 734
Eco57I CTGAAG 1 cut(s) 729
EcoICRI GAGCTC 1 cut(s) 734
EcoO109I RGGNCCY 2 cut(s) 178, 296
EcoRII CCWGG 2 cut(s) 174, 292
EcoRV GATATC 1 cut(s) 72
EcoT38I GRGCYC 1 cut(s) 736
FaiI YATR 2 cut(s) 15, 549
FauI CCCGC 1 cut(s) 563
FokI GGATG 2 cut(s) 737, 893
FriOI GRGCYC 1 cut(s) 736
FspBI CTAG 1 cut(s) 657
GsaI CCCAGC 2 cut(s) 185, 303
GsuI CTGGAG 1 cut(s) 720
HaeIII GGCC 2 cut(s) 179, 297
HphI GGTGA 2 cut(s) 245, 433
Hpy188I TCNGA 4 cut(s) 518, 877, 895, 904
Hpy188III TCNNGA 1 cut(s) 397
Hpy99I CGWCG 1 cut(s) 62
HpyAV CCTTC 1 cut(s) 641
HpyCH4III ACNGT 3 cut(s) 19, 249, 911
HpyCH4IV ACGT 1 cut(s) 60
HpyF10VI GCNNNNNNNGC 1 cut(s) 112
HpyF3I CTNAG 6 cut(s) 230, 389, 661, 781, 816, 860
HpySE526I ACGT 1 cut(s) 60
KpnI GGTACC 1 cut(s) 684
LmnI GCTCC 2 cut(s) 731, 739
MaeI CTAG 1 cut(s) 657
MaeII ACGT 1 cut(s) 60
MaeIII GTNAC 3 cut(s) 573, 581, 718
MhlI GDGCHC 2 cut(s) 117, 736
MluCI AATT 2 cut(s) 127, 608
MlyI GAGTC 6 cut(s) 164, 220, 282, 338, 379, 866
MroXI GAANNNNTTC 2 cut(s) 470, 852
MseI TTAA 2 cut(s) 23, 612
MspR9I CCNGG 2 cut(s) 176, 294
MvaI CCWGG 2 cut(s) 176, 294
MvnI CGCG 1 cut(s) 99
MwoI GCNNNNNNNGC 1 cut(s) 112
NlaIV GGNNCC 3 cut(s) 180, 298, 682
NmeAIII GCCGAG 1 cut(s) 413
NmuCI GTSAC 3 cut(s) 573, 581, 718
NspV TTCGAA 1 cut(s) 132
PdmI GAANNNNTTC 2 cut(s) 470, 852
PfeI GAWTC 6 cut(s) 466, 471, 497, 519, 653, 899
Pfl23II CGTACG 1 cut(s) 54
PleI GAGTC 6 cut(s) 164, 220, 282, 338, 379, 866
PpsI GAGTC 6 cut(s) 164, 220, 282, 338, 379, 866
PshAI GACNNNNGTC 1 cut(s) 756
Psp124BI GAGCTC 1 cut(s) 736
Psp6I CCWGG 2 cut(s) 174, 292
PspFI CCCAGC 2 cut(s) 181, 299
PspGI CCWGG 2 cut(s) 174, 292
PspLI CGTACG 1 cut(s) 54
PspN4I GGNNCC 3 cut(s) 180, 298, 682
PspPI GGNCC 2 cut(s) 178, 296
RsaI GTAC 2 cut(s) 56, 682
RsaNI GTAC 2 cut(s) 55, 681
SacI GAGCTC 1 cut(s) 736
SaqAI TTAA 2 cut(s) 23, 612
Sau96I GGNCC 2 cut(s) 178, 296
SchI GAGTC 6 cut(s) 164, 220, 282, 338, 379, 866
ScrFI CCNGG 2 cut(s) 176, 294
SduI GDGCHC 2 cut(s) 117, 736
SfuI TTCGAA 1 cut(s) 132
SmlI CTYRAG 1 cut(s) 633
SmoI CTYRAG 1 cut(s) 633
Sse9I AATT 2 cut(s) 127, 608
SsiI CCGC 1 cut(s) 570
SspI AATATT 1 cut(s) 49
SspMI CTAG 1 cut(s) 657
SstI GAGCTC 1 cut(s) 736
StyD4I CCNGG 2 cut(s) 174, 292
TaaI ACNGT 3 cut(s) 19, 249, 911
TaiI ACGT 1 cut(s) 63
TaqII GACCGA 1 cut(s) 426
TasI AATT 2 cut(s) 127, 608
TfiI GAWTC 6 cut(s) 466, 471, 497, 519, 653, 899
Tru1I TTAA 2 cut(s) 23, 612
Tru9I TTAA 2 cut(s) 23, 612
TscAI CASTG 2 cut(s) 776, 868
TseFI GTSAC 3 cut(s) 573, 581, 718
Tsp45I GTSAC 3 cut(s) 573, 581, 718
TspDTI ATGAA 2 cut(s) 861, 897
TspGWI ACGGA 1 cut(s) 737
TspRI CASTG 2 cut(s) 776, 868
XapI RAATTY 1 cut(s) 608
XmnI GAANNNNTTC 2 cut(s) 470, 852
XspI CTAG 1 cut(s) 657
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.