Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0012679

Physical Location & Seq

Genomic Coordinates Reverse (-)

52900809 .. 52904427

Gene Structure 3619 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000019508

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGCTCTTAGGCTCTCACTCTCACAGTCTCACTCCTCTCTGCTCTCCTCCAACGAAGAGTCGAAGACTCGAAGGCTCTCGTTCTTCTCTCACTCCTCTATTCCATCGAAGATCGGAAGCCCTCGCTCTTCTCTCACTCCTCTTTGCCCTCCATCGAAGATTGAAGGCTCTCGCTCTTCTCTCACTCCTCTACTCCATCGAAGATCGGAAGCTCTCGCTCTTCTCTCACTCCTCTCTGCCCTCCATCGAAGATCGAAGGCTCTCGCTCTTCTCTCACTCCTCTACTCCATCGAAGATCGGAAGCTGTCGCTCTTCTCTCACTCCTCTCTGCCCTCCTCGAAGATTCGAAGGCTCTCATTCCTCTCTGCCCTCCATCAAGGAATCGATTCTTCAACTCGATTCTTCAAGCCTCCCACTCCGAATCGATGGGAAAACTGCGAACCCTGCAAATCTGCAATCCTATGTAGGTAGAGCTACTGTTACGTTTAAAAGCAGTAAGAAGAAAGCTCAAGGACAGAAAGAAGGAGATTCTAGTCTAGTTGTTTCTTCAACTGGTACCTCTCCCTCAATCCCTGACAGAGCTGAAGAAGATGTCACGAATGGAGGAGATCCAGCTTCCTCATTTGACAAGGTTAGTAACAATCCTCGAGCTGATAGAAAACATCATGTAACCTTAGCCTCTTCAACCTCTTGTCCTCCTCCAAAAGCTAAGGGAAAGAATGGTATTGGAACTAATGATGAAATTGTTCAACTCAGTGAAGATGACTCCGAGGATGAAATGGTGTCTGATGATTCAGAAAACAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

269

Amino Acids

28.89

Weight (kDa)

8.88

Isoelectric Point (pI)

63.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012679)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0360411 RchiOBHm_Chr3g0479201 RchiOBHm_Chr5g0016291 RchiOBHm_Chr5g0071091
rosa_laevigata	RLG00000004355 RLG00000012312 RLG00000019508 RLG00000019971 RLG00000036427
rosa_multiflora	Rmu_sc0011390.1_g000003
rosa_roxburghii	Rroxscaffold_1G00009370 Rroxscaffold_2G00107450
rosa_rugosa	Rorug01G0201800
rosa_samantha	Rh1BG230500 Rh1CG077400 Rh2DG192900 Rh4BG427800 Rh7AG180300 Rh7CG180400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	554
AccB1I	GGYRCC	1 cut(s)	554
AclWI	GGATC	1 cut(s)	602
AcuI	CTGAAG	1 cut(s)	603
AfaI	GTAC	1 cut(s)	556
AgsI	TTSAA	6 cut(s)	163, 392, 405, 549, 684, 749
AluBI	AGCT	8 cut(s)	211, 303, 473, 506, 581, 614, 650, 707
AluI	AGCT	8 cut(s)	211, 303, 473, 506, 581, 614, 650, 707
Alw26I	GTCTC	1 cut(s)	32
AlwI	GGATC	1 cut(s)	602
Ama87I	CYCGRG	1 cut(s)	645
Asp700I	GAANNNNTTC	2 cut(s)	384, 744
Asp718I	GGTACC	1 cut(s)	554
AsuII	TTCGAA	1 cut(s)	345
AvaI	CYCGRG	1 cut(s)	645
BanI	GGYRCC	1 cut(s)	554
BbsI	GAAGAC	1 cut(s)	70
BccI	CCATC	7 cut(s)	111, 159, 203, 251, 295, 380, 419
BcoDI	GTCTC	1 cut(s)	32
BfaI	CTAG	2 cut(s)	531, 536
BmeT110I	CYCGRG	1 cut(s)	645
BmiI	GGNNCC	1 cut(s)	556
BpiI	GAAGAC	1 cut(s)	70
Bpu10I	CCTNAGC	2 cut(s)	673, 708
Bpu14I	TTCGAA	1 cut(s)	345
BpuEI	CTTGAG	1 cut(s)	492
Bsa29I	ATCGAT	2 cut(s)	383, 423
BsaJI	CCNNGG	1 cut(s)	768
Bse1I	ACTGG	1 cut(s)	556
BseCI	ATCGAT	2 cut(s)	383, 423
BseDI	CCNNGG	1 cut(s)	768
BseGI	GGATG	1 cut(s)	778
BseMII	CTCAG	1 cut(s)	766
BseNI	ACTGG	1 cut(s)	556
BshNI	GGYRCC	1 cut(s)	554
BshVI	ATCGAT	2 cut(s)	383, 423
BsiHKCI	CYCGRG	1 cut(s)	645
BsmAI	GTCTC	1 cut(s)	32
BsoBI	CYCGRG	1 cut(s)	645
Bsp119I	TTCGAA	1 cut(s)	345
Bsp143I	GATC	5 cut(s)	110, 202, 250, 294, 607
BspCNI	CTCAG	1 cut(s)	765
BspDI	ATCGAT	2 cut(s)	383, 423
BspLI	GGNNCC	1 cut(s)	556
BspPI	GGATC	1 cut(s)	602
BspQI	GCTCTTC	5 cut(s)	132, 180, 224, 272, 316
BspT104I	TTCGAA	1 cut(s)	345
BspT107I	GGYRCC	1 cut(s)	554
BsrI	ACTGG	1 cut(s)	556
BssECI	CCNNGG	1 cut(s)	768
BssMI	GATC	5 cut(s)	110, 202, 250, 294, 607
Bst4CI	ACNGT	3 cut(s)	26, 478, 803
Bst6I	CTCTTC	7 cut(s)	50, 132, 180, 224, 272, 316, 685
BstBI	TTCGAA	1 cut(s)	345
BstDEI	CTNAG	4 cut(s)	7, 673, 708, 752
BstF5I	GGATG	1 cut(s)	778
BstKTI	GATC	5 cut(s)	113, 205, 253, 297, 610
BstMAI	GTCTC	1 cut(s)	32
BstMBI	GATC	5 cut(s)	110, 202, 250, 294, 607
BstMWI	GCNNNNNNNGC	1 cut(s)	443
BstV2I	GAAGAC	1 cut(s)	70
BstX2I	RGATCY	1 cut(s)	607
BstYI	RGATCY	1 cut(s)	607
Bsu15I	ATCGAT	2 cut(s)	383, 423
BsuTUI	ATCGAT	2 cut(s)	383, 423
BtsCI	GGATG	1 cut(s)	778
BtsIMutI	CAGTG	1 cut(s)	760
ClaI	ATCGAT	2 cut(s)	383, 423
Csp6I	GTAC	1 cut(s)	555
CviAII	CATG	1 cut(s)	665
CviQI	GTAC	1 cut(s)	555
DdeI	CTNAG	4 cut(s)	7, 673, 708, 752
DpnI	GATC	5 cut(s)	112, 204, 252, 296, 609
DpnII	GATC	5 cut(s)	110, 202, 250, 294, 607
DraI	TTTAAA	1 cut(s)	487
Eam1104I	CTCTTC	7 cut(s)	50, 132, 180, 224, 272, 316, 685
EarI	CTCTTC	7 cut(s)	50, 132, 180, 224, 272, 316, 685
Eco57I	CTGAAG	1 cut(s)	603
Eco88I	CYCGRG	1 cut(s)	645
FaeI	CATG	1 cut(s)	668
FaiI	YATR	2 cut(s)	462, 666
FatI	CATG	1 cut(s)	664
FokI	GGATG	1 cut(s)	785
FspBI	CTAG	2 cut(s)	531, 536
Hin1II	CATG	1 cut(s)	668
Hpy188I	TCNGA	7 cut(s)	115, 207, 299, 419, 769, 787, 796
Hpy188III	TCNNGA	1 cut(s)	595
HpyAV	CCTTC	5 cut(s)	65, 157, 249, 341, 515
HpyCH4III	ACNGT	3 cut(s)	26, 478, 803
HpyCH4IV	ACGT	1 cut(s)	482
HpyCH4V	TGCA	2 cut(s)	446, 454
HpyF10VI	GCNNNNNNNGC	1 cut(s)	443
HpyF3I	CTNAG	4 cut(s)	7, 673, 708, 752
HpySE526I	ACGT	1 cut(s)	482
Hsp92II	CATG	1 cut(s)	668
KpnI	GGTACC	1 cut(s)	558
Kzo9I	GATC	5 cut(s)	110, 202, 250, 294, 607
LguI	GCTCTTC	5 cut(s)	132, 180, 224, 272, 316
LpnPI	CCDG	4 cut(s)	456, 537, 585, 624
MaeI	CTAG	2 cut(s)	531, 536
MaeII	ACGT	1 cut(s)	482
MaeIII	GTNAC	4 cut(s)	478, 592, 635, 667
MalI	GATC	5 cut(s)	112, 204, 252, 296, 609
MboI	GATC	5 cut(s)	110, 202, 250, 294, 607
MflI	RGATCY	1 cut(s)	607
MluCI	AATT	1 cut(s)	741
MlyI	GAGTC	3 cut(s)	60, 67, 758
MmeI	TCCRAC	1 cut(s)	74
MroXI	GAANNNNTTC	2 cut(s)	384, 744
MseI	TTAA	1 cut(s)	486
MwoI	GCNNNNNNNGC	1 cut(s)	443
NdeII	GATC	5 cut(s)	110, 202, 250, 294, 607
NlaIII	CATG	1 cut(s)	668
NlaIV	GGNNCC	1 cut(s)	556
NmuCI	GTSAC	1 cut(s)	592
NspV	TTCGAA	1 cut(s)	345
PaeR7I	CTCGAG	1 cut(s)	645
PciSI	GCTCTTC	5 cut(s)	132, 180, 224, 272, 316
PdmI	GAANNNNTTC	2 cut(s)	384, 744
PfeI	GAWTC	7 cut(s)	342, 380, 385, 398, 420, 527, 791
PleI	GAGTC	3 cut(s)	60, 66, 758
PpsI	GAGTC	3 cut(s)	60, 66, 758
PspN4I	GGNNCC	1 cut(s)	556
PspXI	VCTCGAGB	1 cut(s)	645
PsuI	RGATCY	1 cut(s)	607
RsaI	GTAC	1 cut(s)	556
RsaNI	GTAC	1 cut(s)	555
SapI	GCTCTTC	5 cut(s)	132, 180, 224, 272, 316
SaqAI	TTAA	1 cut(s)	486
Sau3AI	GATC	5 cut(s)	110, 202, 250, 294, 607
SchI	GAGTC	3 cut(s)	60, 67, 758
Sfr274I	CTCGAG	1 cut(s)	645
SfuI	TTCGAA	1 cut(s)	345
SlaI	CTCGAG	1 cut(s)	645
SmlI	CTYRAG	2 cut(s)	507, 645
SmoI	CTYRAG	2 cut(s)	507, 645
Sse9I	AATT	1 cut(s)	741
SspMI	CTAG	2 cut(s)	531, 536
TaaI	ACNGT	3 cut(s)	26, 478, 803
TaiI	ACGT	1 cut(s)	485
TasI	AATT	1 cut(s)	741
TfiI	GAWTC	7 cut(s)	342, 380, 385, 398, 420, 527, 791
Tru1I	TTAA	1 cut(s)	486
Tru9I	TTAA	1 cut(s)	486
TscAI	CASTG	1 cut(s)	760
TseFI	GTSAC	1 cut(s)	592
Tsp45I	GTSAC	1 cut(s)	592
TspDTI	ATGAA	2 cut(s)	753, 789
TspRI	CASTG	1 cut(s)	760
XhoI	CTCGAG	1 cut(s)	645
XmnI	GAANNNNTTC	2 cut(s)	384, 744
XspI	CTAG	2 cut(s)	531, 536

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.