PHD-finger
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr5g0029141 |
| rosa_laevigata | RLG00000017780 RLG00000022989 RLG00000031076 |
| rosa_multiflora | Rmu_sc0018451.1_g000002 |
| rosa_samantha | Rh2BG228100 Rh5AG119100 Rh5CG128300 Rh5DG207100 Rh6BG087400 Rh7AG497800 Rh7BG244600 Rh7CG498000 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 33, 136 |
| AclWI | GGATC | 2 cut(s) | 83, 96 |
| AfaI | GTAC | 1 cut(s) | 70 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 238 |
| AgsI | TTSAA | 1 cut(s) | 59 |
| AjnI | CCWGG | 1 cut(s) | 231 |
| Alw26I | GTCTC | 2 cut(s) | 72, 229 |
| AlwI | GGATC | 2 cut(s) | 83, 96 |
| AsuC2I | CCSGG | 1 cut(s) | 20 |
| AsuHPI | GGTGA | 1 cut(s) | 47 |
| BamHI | GGATCC | 1 cut(s) | 88 |
| BccI | CCATC | 3 cut(s) | 35, 68, 101 |
| BciT130I | CCWGG | 1 cut(s) | 233 |
| BcnI | CCSGG | 1 cut(s) | 20 |
| BcoDI | GTCTC | 2 cut(s) | 72, 229 |
| Bme1390I | CCNGG | 2 cut(s) | 20, 233 |
| BmiI | GGNNCC | 1 cut(s) | 90 |
| BmrFI | CCNGG | 2 cut(s) | 20, 233 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 199, 231 |
| BpuMI | CCSGG | 1 cut(s) | 20 |
| BsaI | GGTCTC | 1 cut(s) | 72 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 238 |
| BseBI | CCWGG | 1 cut(s) | 233 |
| BseGI | GGATG | 1 cut(s) | 46 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 238 |
| BseMII | CTCAG | 1 cut(s) | 20 |
| BsiSI | CCGG | 1 cut(s) | 20 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 238 |
| BsmAI | GTCTC | 2 cut(s) | 72, 229 |
| BsmI | GAATGC | 1 cut(s) | 65 |
| Bso31I | GGTCTC | 1 cut(s) | 72 |
| Bsp143I | GATC | 2 cut(s) | 88, 115 |
| BspACI | CCGC | 2 cut(s) | 33, 136 |
| BspCNI | CTCAG | 1 cut(s) | 19 |
| BspLI | GGNNCC | 1 cut(s) | 90 |
| BspPI | GGATC | 2 cut(s) | 83, 96 |
| BspTNI | GGTCTC | 1 cut(s) | 72 |
| BssMI | GATC | 2 cut(s) | 88, 115 |
| Bst2UI | CCWGG | 1 cut(s) | 233 |
| BstDEI | CTNAG | 1 cut(s) | 6 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 236 |
| BstF5I | GGATG | 1 cut(s) | 46 |
| BstKTI | GATC | 2 cut(s) | 91, 118 |
| BstMAI | GTCTC | 2 cut(s) | 72, 229 |
| BstMBI | GATC | 2 cut(s) | 88, 115 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 192 |
| BstNI | CCWGG | 1 cut(s) | 233 |
| BstSCI | CCNGG | 2 cut(s) | 18, 231 |
| BstX2I | RGATCY | 1 cut(s) | 88 |
| BstYI | RGATCY | 1 cut(s) | 88 |
| BtsCI | GGATG | 1 cut(s) | 46 |
| Csp6I | GTAC | 1 cut(s) | 69 |
| CviAII | CATG | 1 cut(s) | 128 |
| CviQI | GTAC | 1 cut(s) | 69 |
| DdeI | CTNAG | 1 cut(s) | 6 |
| DpnI | GATC | 2 cut(s) | 90, 117 |
| DpnII | GATC | 2 cut(s) | 88, 115 |
| Eco31I | GGTCTC | 1 cut(s) | 72 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 236 |
| EcoRII | CCWGG | 1 cut(s) | 231 |
| FaeI | CATG | 1 cut(s) | 131 |
| FaiI | YATR | 2 cut(s) | 129, 141 |
| FatI | CATG | 1 cut(s) | 127 |
| FauI | CCCGC | 1 cut(s) | 143 |
| FokI | GGATG | 1 cut(s) | 53 |
| HapII | CCGG | 1 cut(s) | 20 |
| Hin1II | CATG | 1 cut(s) | 131 |
| HinfI | GANTC | 2 cut(s) | 26, 208 |
| HpaII | CCGG | 1 cut(s) | 20 |
| HphI | GGTGA | 1 cut(s) | 47 |
| Hpy188I | TCNGA | 5 cut(s) | 9, 88, 93, 120, 207 |
| Hpy188III | TCNNGA | 1 cut(s) | 167 |
| Hpy99I | CGWCG | 2 cut(s) | 88, 207 |
| HpyAV | CCTTC | 1 cut(s) | 222 |
| HpyCH4V | TGCA | 1 cut(s) | 63 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 192 |
| HpyF3I | CTNAG | 1 cut(s) | 6 |
| Hsp92II | CATG | 1 cut(s) | 131 |
| Kzo9I | GATC | 2 cut(s) | 88, 115 |
| LmnI | GCTCC | 1 cut(s) | 244 |
| LpnPI | CCDG | 4 cut(s) | 33, 180, 218, 245 |
| MalI | GATC | 2 cut(s) | 90, 117 |
| MboI | GATC | 2 cut(s) | 88, 115 |
| MboII | GAAGA | 1 cut(s) | 35 |
| MflI | RGATCY | 1 cut(s) | 88 |
| MlyI | GAGTC | 1 cut(s) | 217 |
| MmeI | TCCRAC | 2 cut(s) | 66, 185 |
| MnlI | CCTC | 3 cut(s) | 15, 31, 163 |
| MspI | CCGG | 1 cut(s) | 20 |
| MspR9I | CCNGG | 2 cut(s) | 20, 233 |
| Mva1269I | GAATGC | 1 cut(s) | 65 |
| MvaI | CCWGG | 1 cut(s) | 233 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 192 |
| NciI | CCSGG | 1 cut(s) | 20 |
| NdeII | GATC | 2 cut(s) | 88, 115 |
| NlaIII | CATG | 1 cut(s) | 131 |
| NlaIV | GGNNCC | 1 cut(s) | 90 |
| PctI | GAATGC | 1 cut(s) | 65 |
| PfeI | GAWTC | 1 cut(s) | 26 |
| PfoI | TCCNGGA | 1 cut(s) | 18 |
| PleI | GAGTC | 1 cut(s) | 216 |
| PpsI | GAGTC | 1 cut(s) | 216 |
| Psp6I | CCWGG | 1 cut(s) | 231 |
| PspGI | CCWGG | 1 cut(s) | 231 |
| PspN4I | GGNNCC | 1 cut(s) | 90 |
| PsuI | RGATCY | 1 cut(s) | 88 |
| RsaI | GTAC | 1 cut(s) | 70 |
| RsaNI | GTAC | 1 cut(s) | 69 |
| Sau3AI | GATC | 2 cut(s) | 88, 115 |
| SchI | GAGTC | 1 cut(s) | 217 |
| ScrFI | CCNGG | 2 cut(s) | 20, 233 |
| SetI | ASST | 1 cut(s) | 243 |
| SsiI | CCGC | 2 cut(s) | 33, 136 |
| StyD4I | CCNGG | 2 cut(s) | 18, 231 |
| TatI | WGTACW | 1 cut(s) | 68 |
| TfiI | GAWTC | 1 cut(s) | 26 |
| TspDTI | ATGAA | 1 cut(s) | 116 |
| TspGWI | ACGGA | 1 cut(s) | 217 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 236 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 174 |