Rh7BG244600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0017442
Physical Location & Seq
Reverse (-)
21776936 .. 21777256
321 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG244600.1

Sequence Viewer

Length: 321 bp
ATGAAGTCACCGGCGATTACTCTGGCCCAAAACCACAAAGCCGCTTCACCGGACGAAGACACCAGCGCCGAGATCTGTGATCATCATGAACCTCGACAACCGACCTTCGCTTCACGATCTGCAGAAGCTAAGAGGAAGGTCGCCGCCGATTTGCCCGACCTGTTCACCTTCCCTCCTCCTCCGGAATCGCCGGAAGCCTTCCTCGCTCTTCCCCTCCCTGCTGACCTGGCAGATCGCCCTCCGGGTCGACCCCGCCGTCGTCCTTCCCTTGGATATCGTCGAGGAGGACGTCATGCGCTCCAGGCGATCCATCTACTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

106

Amino Acids

11.62

Weight (kDa)

9.03

Isoelectric Point (pI)

89.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 255
AatII GACGTC 1 cut(s) 292
AccI GTMKAC 1 cut(s) 247
AccIII TCCGGA 1 cut(s) 181
AciI CCGC 3 cut(s) 42, 144, 253
AclWI GGATC 1 cut(s) 301
AcyI GRCGYC 1 cut(s) 289
AfiI CCNNNNNNNGG 1 cut(s) 269
AjnI CCWGG 2 cut(s) 225, 300
AluBI AGCT 1 cut(s) 128
AluI AGCT 1 cut(s) 128
AlwI GGATC 1 cut(s) 301
Aor13HI TCCGGA 1 cut(s) 181
AoxI GGCC 1 cut(s) 24
AspLEI GCGC 2 cut(s) 68, 298
AspS9I GGNCC 1 cut(s) 25
AsuC2I CCSGG 1 cut(s) 243
AsuHPI GGTGA 2 cut(s) 39, 157
BbsI GAAGAC 1 cut(s) 63
BccI CCATC 1 cut(s) 318
BceAI ACGGC 1 cut(s) 240
BciT130I CCWGG 2 cut(s) 227, 302
BclI TGATCA 1 cut(s) 79
BcnI CCSGG 1 cut(s) 243
BfmI CTRYAG 1 cut(s) 120
BfoI RGCGCY 1 cut(s) 69
BglII AGATCT 1 cut(s) 72
BisI GCNGC 2 cut(s) 42, 144
BlsI GCNGC 2 cut(s) 43, 145
Bme1390I CCNGG 3 cut(s) 227, 243, 302
BmgT120I GGNCC 1 cut(s) 25
BmrFI CCNGG 3 cut(s) 227, 243, 302
BpiI GAAGAC 1 cut(s) 63
BpmI CTGGAG 1 cut(s) 284
BpuMI CCSGG 1 cut(s) 243
BsaHI GRCGYC 1 cut(s) 289
BsaJI CCNNGG 1 cut(s) 268
BsaWI WCCGGW 2 cut(s) 49, 181
BsaXI ACNNNNNCTCC 2 cut(s) 157, 187
Bsc4I CCNNNNNNNGG 1 cut(s) 269
Bse118I RCCGGY 1 cut(s) 10
BseAI TCCGGA 1 cut(s) 181
BseBI CCWGG 2 cut(s) 227, 302
BseDI CCNNGG 1 cut(s) 268
BseLI CCNNNNNNNGG 1 cut(s) 269
BseRI GAGGAG 3 cut(s) 165, 168, 297
BshFI GGCC 1 cut(s) 26
BsiSI CCGG 5 cut(s) 11, 50, 182, 191, 242
BslI CCNNNNNNNGG 1 cut(s) 269
BsnI GGCC 1 cut(s) 26
Bsp13I TCCGGA 1 cut(s) 181
Bsp143I GATC 5 cut(s) 72, 79, 116, 232, 306
BspACI CCGC 3 cut(s) 42, 144, 253
BspANI GGCC 1 cut(s) 26
BspEI TCCGGA 1 cut(s) 181
BspHI TCATGA 1 cut(s) 85
BspMAI CTGCAG 1 cut(s) 124
BspPI GGATC 1 cut(s) 301
BspQI GCTCTTC 1 cut(s) 213
BsrFI RCCGGY 1 cut(s) 10
BssAI RCCGGY 1 cut(s) 10
BssECI CCNNGG 1 cut(s) 268
BssMI GATC 5 cut(s) 72, 79, 116, 232, 306
BssNI GRCGYC 1 cut(s) 289
BssT1I CCWWGG 1 cut(s) 268
Bst2UI CCWGG 2 cut(s) 227, 302
Bst4CI ACNGT 1 cut(s) 318
Bst6I CTCTTC 1 cut(s) 213
BstACI GRCGYC 1 cut(s) 289
BstDEI CTNAG 1 cut(s) 129
BstH2I RGCGCY 1 cut(s) 69
BstHHI GCGC 2 cut(s) 68, 298
BstKTI GATC 5 cut(s) 75, 82, 119, 235, 309
BstMBI GATC 5 cut(s) 72, 79, 116, 232, 306
BstMWI GCNNNNNNNGC 3 cut(s) 203, 227, 302
BstNI CCWGG 2 cut(s) 227, 302
BstSCI CCNGG 3 cut(s) 225, 241, 300
BstSFI CTRYAG 1 cut(s) 120
BstV2I GAAGAC 1 cut(s) 63
BstX2I RGATCY 1 cut(s) 72
BstYI RGATCY 1 cut(s) 72
BsuRI GGCC 1 cut(s) 26
CciI TCATGA 1 cut(s) 85
CfoI GCGC 2 cut(s) 68, 298
Cfr10I RCCGGY 1 cut(s) 10
Cfr13I GGNCC 1 cut(s) 25
CviAII CATG 2 cut(s) 86, 293
CviJI RGCY 4 cut(s) 26, 41, 128, 197
CviKI_1 RGCY 4 cut(s) 26, 41, 128, 197
DdeI CTNAG 1 cut(s) 129
DpnI GATC 5 cut(s) 74, 81, 118, 234, 308
DpnII GATC 5 cut(s) 72, 79, 116, 232, 306
DrdI GACNNNNNNGTC 1 cut(s) 255
DseDI GACNNNNNNGTC 1 cut(s) 255
Eam1104I CTCTTC 1 cut(s) 213
EarI CTCTTC 1 cut(s) 213
Eco130I CCWWGG 1 cut(s) 268
Eco32I GATATC 1 cut(s) 275
EcoRII CCWGG 2 cut(s) 225, 300
EcoRV GATATC 1 cut(s) 275
EcoT14I CCWWGG 1 cut(s) 268
ErhI CCWWGG 1 cut(s) 268
FaeI CATG 2 cut(s) 89, 296
FaiI YATR 2 cut(s) 87, 294
FatI CATG 2 cut(s) 85, 292
FauI CCCGC 1 cut(s) 260
FbaI TGATCA 1 cut(s) 79
FblI GTMKAC 1 cut(s) 247
Fnu4HI GCNGC 2 cut(s) 42, 144
Fsp4HI GCNGC 2 cut(s) 42, 144
GlaI GCGC 2 cut(s) 67, 297
GluI GCNGC 2 cut(s) 42, 144
GsuI CTGGAG 1 cut(s) 284
HaeII RGCGCY 1 cut(s) 69
HaeIII GGCC 1 cut(s) 26
HapII CCGG 5 cut(s) 11, 50, 182, 191, 242
HhaI GCGC 2 cut(s) 68, 298
Hin1I GRCGYC 1 cut(s) 289
Hin1II CATG 2 cut(s) 89, 296
Hin6I GCGC 2 cut(s) 66, 296
HinP1I GCGC 2 cut(s) 66, 296
HincII GTYRAC 1 cut(s) 248
HindII GTYRAC 1 cut(s) 248
HinfI GANTC 1 cut(s) 185
HpaII CCGG 5 cut(s) 11, 50, 182, 191, 242
HphI GGTGA 2 cut(s) 39, 157
Hpy166II GTNNAC 2 cut(s) 165, 248
Hpy188III TCNNGA 3 cut(s) 86, 114, 182
Hpy8I GTNNAC 2 cut(s) 165, 248
Hpy99I CGWCG 2 cut(s) 261, 282
HpyAV CCTTC 5 cut(s) 115, 130, 178, 208, 273
HpyCH4III ACNGT 1 cut(s) 318
HpyCH4IV ACGT 1 cut(s) 289
HpyCH4V TGCA 1 cut(s) 122
HpyF10VI GCNNNNNNNGC 3 cut(s) 203, 227, 302
HpyF3I CTNAG 1 cut(s) 129
HpySE526I ACGT 1 cut(s) 289
Hsp92I GRCGYC 1 cut(s) 289
Hsp92II CATG 2 cut(s) 89, 296
HspAI GCGC 2 cut(s) 66, 296
Kpn2I TCCGGA 1 cut(s) 181
Ksp22I TGATCA 1 cut(s) 79
Kzo9I GATC 5 cut(s) 72, 79, 116, 232, 306
LguI GCTCTTC 1 cut(s) 213
LmnI GCTCC 1 cut(s) 303
MaeII ACGT 1 cut(s) 289
MaeIII GTNAC 1 cut(s) 6
MalI GATC 5 cut(s) 74, 81, 118, 234, 308
MboI GATC 5 cut(s) 72, 79, 116, 232, 306
MboII GAAGA 2 cut(s) 68, 200
MflI RGATCY 1 cut(s) 72
MroI TCCGGA 1 cut(s) 181
MspI CCGG 5 cut(s) 11, 50, 182, 191, 242
MspR9I CCNGG 3 cut(s) 227, 243, 302
MvaI CCWGG 2 cut(s) 227, 302
MwoI GCNNNNNNNGC 3 cut(s) 203, 227, 302
NciI CCSGG 1 cut(s) 243
NdeII GATC 5 cut(s) 72, 79, 116, 232, 306
NlaIII CATG 2 cut(s) 89, 296
NmeAIII GCCGAG 1 cut(s) 94
NmuCI GTSAC 1 cut(s) 6
PagI TCATGA 1 cut(s) 85
PciSI GCTCTTC 1 cut(s) 213
PcsI WCGNNNNNNNCGW 2 cut(s) 253, 286
PfeI GAWTC 1 cut(s) 185
PkrI GCNGC 2 cut(s) 43, 145
Psp6I CCWGG 2 cut(s) 225, 300
PspGI CCWGG 2 cut(s) 225, 300
PspPI GGNCC 1 cut(s) 25
PstI CTGCAG 1 cut(s) 124
PsuI RGATCY 1 cut(s) 72
SalI GTCGAC 1 cut(s) 246
SapI GCTCTTC 1 cut(s) 213
SatI GCNGC 2 cut(s) 42, 144
Sau3AI GATC 5 cut(s) 72, 79, 116, 232, 306
Sau96I GGNCC 1 cut(s) 25
ScrFI CCNGG 3 cut(s) 227, 243, 302
SetI ASST 8 cut(s) 94, 107, 130, 141, 162, 170, 228, 292
SfcI CTRYAG 1 cut(s) 120
SgrAI CRCCGGYG 1 cut(s) 10
SsiI CCGC 3 cut(s) 42, 144, 253
StyD4I CCNGG 3 cut(s) 225, 241, 300
StyI CCWWGG 1 cut(s) 268
TaaI ACNGT 1 cut(s) 318
TaiI ACGT 1 cut(s) 292
TaqI TCGA 3 cut(s) 94, 247, 280
TauI GCSGC 2 cut(s) 44, 146
TfiI GAWTC 1 cut(s) 185
TseFI GTSAC 1 cut(s) 6
Tsp45I GTSAC 1 cut(s) 6
TspDTI ATGAA 2 cut(s) 17, 102
XmiI GTMKAC 1 cut(s) 247
ZraI GACGTC 1 cut(s) 290
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.