Rh2BG228100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0017442
Physical Location & Seq
Forward (+)
22313185 .. 22313457
273 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG228100.1

Sequence Viewer

Length: 273 bp
ATGAAGTCACCAGCGATTGCTCTGGCCCAAAACCACAGAGCCGCTTCACCGGACGAAGACACCAGCGCCGAGATCCGTGATCATCATAAACCTCGACAACCCTCTCAACGTTGCCGTCTGCGCGGAGCACGCCTACCCTGCCACCGTCACCATATTCTCCCCCAACGGCGAGTGGATCGCGTCCGCCGACGTCTCCGGCACCGTCAGGATCTAGGGGATCCACAACGATTTGGTCCTCAAGAACGAGTTCAAGGTCGTCTCGGGTCGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

90

Amino Acids

10.54

Weight (kDa)

11.67

Isoelectric Point (pI)

83.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 193
AccB1I GGYRCC 1 cut(s) 198
AccII CGCG 2 cut(s) 123, 180
AciI CCGC 3 cut(s) 42, 123, 184
AclI AACGTT 1 cut(s) 109
AclWI GGATC 5 cut(s) 67, 183, 212, 216, 225
AcyI GRCGYC 1 cut(s) 190
AgsI TTSAA 1 cut(s) 251
Alw21I GWGCWC 1 cut(s) 130
Alw26I GTCTC 2 cut(s) 197, 263
AlwI GGATC 5 cut(s) 67, 183, 212, 216, 225
Ama87I CYCGRG 1 cut(s) 260
AoxI GGCC 1 cut(s) 24
Asp700I GAANNNNTTC 1 cut(s) 246
AspLEI GCGC 2 cut(s) 68, 123
AspS9I GGNCC 2 cut(s) 25, 233
AsuHPI GGTGA 2 cut(s) 39, 140
AvaI CYCGRG 1 cut(s) 260
AvaII GGWCC 1 cut(s) 233
BamHI GGATCC 1 cut(s) 217
BanI GGYRCC 1 cut(s) 198
BbsI GAAGAC 1 cut(s) 63
Bbv12I GWGCWC 1 cut(s) 130
BceAI ACGGC 2 cut(s) 99, 182
BclI TGATCA 1 cut(s) 79
BcoDI GTCTC 2 cut(s) 197, 263
BfaI CTAG 1 cut(s) 212
BfoI RGCGCY 1 cut(s) 69
BisI GCNGC 1 cut(s) 42
BlsI GCNGC 1 cut(s) 43
Bme18I GGWCC 1 cut(s) 233
BmeT110I CYCGRG 1 cut(s) 260
BmgT120I GGNCC 2 cut(s) 25, 233
BmiI GGNNCC 2 cut(s) 200, 219
BpiI GAAGAC 1 cut(s) 63
BpuEI CTTGAG 1 cut(s) 222
BsaHI GRCGYC 1 cut(s) 190
BsaWI WCCGGW 1 cut(s) 49
Bsh1236I CGCG 2 cut(s) 123, 180
BshFI GGCC 1 cut(s) 26
BshNI GGYRCC 1 cut(s) 198
BsiHKAI GWGCWC 1 cut(s) 130
BsiHKCI CYCGRG 1 cut(s) 260
BsiSI CCGG 2 cut(s) 50, 196
BsmAI GTCTC 2 cut(s) 197, 263
BsmBI CGTCTC 2 cut(s) 197, 263
BsnI GGCC 1 cut(s) 26
BsoBI CYCGRG 1 cut(s) 260
Bsp1286I GDGCHC 1 cut(s) 130
Bsp143I GATC 5 cut(s) 72, 79, 175, 208, 217
BspACI CCGC 3 cut(s) 42, 123, 184
BspANI GGCC 1 cut(s) 26
BspFNI CGCG 2 cut(s) 123, 180
BspLI GGNNCC 2 cut(s) 200, 219
BspPI GGATC 5 cut(s) 67, 183, 212, 216, 225
BspT107I GGYRCC 1 cut(s) 198
BssMI GATC 5 cut(s) 72, 79, 175, 208, 217
BssNI GRCGYC 1 cut(s) 190
Bst4CI ACNGT 2 cut(s) 146, 203
BstACI GRCGYC 1 cut(s) 190
BstC8I GCNNGC 1 cut(s) 130
BstFNI CGCG 2 cut(s) 123, 180
BstH2I RGCGCY 1 cut(s) 69
BstHHI GCGC 2 cut(s) 68, 123
BstKTI GATC 5 cut(s) 75, 82, 178, 211, 220
BstMAI GTCTC 2 cut(s) 197, 263
BstMBI GATC 5 cut(s) 72, 79, 175, 208, 217
BstMWI GCNNNNNNNGC 3 cut(s) 120, 129, 138
BstUI CGCG 2 cut(s) 123, 180
BstV2I GAAGAC 1 cut(s) 63
BstX2I RGATCY 3 cut(s) 72, 208, 217
BstYI RGATCY 3 cut(s) 72, 208, 217
BsuRI GGCC 1 cut(s) 26
Cac8I GCNNGC 1 cut(s) 130
CfoI GCGC 2 cut(s) 68, 123
Cfr13I GGNCC 2 cut(s) 25, 233
CseI GACGC 1 cut(s) 169
CviJI RGCY 2 cut(s) 26, 41
CviKI_1 RGCY 2 cut(s) 26, 41
DpnI GATC 5 cut(s) 74, 81, 177, 210, 219
DpnII GATC 5 cut(s) 72, 79, 175, 208, 217
EciI GGCGGA 1 cut(s) 173
Eco47I GGWCC 1 cut(s) 233
Eco88I CYCGRG 1 cut(s) 260
Esp3I CGTCTC 2 cut(s) 197, 263
FaiI YATR 2 cut(s) 87, 153
FbaI TGATCA 1 cut(s) 79
Fnu4HI GCNGC 1 cut(s) 42
Fsp4HI GCNGC 1 cut(s) 42
FspBI CTAG 1 cut(s) 212
GlaI GCGC 2 cut(s) 67, 122
GluI GCNGC 1 cut(s) 42
HaeII RGCGCY 1 cut(s) 69
HaeIII GGCC 1 cut(s) 26
HapII CCGG 2 cut(s) 50, 196
HgaI GACGC 1 cut(s) 169
HhaI GCGC 2 cut(s) 68, 123
Hin1I GRCGYC 1 cut(s) 190
Hin6I GCGC 2 cut(s) 66, 121
HinP1I GCGC 2 cut(s) 66, 121
HpaII CCGG 2 cut(s) 50, 196
HphI GGTGA 2 cut(s) 39, 140
Hpy188I TCNGA 1 cut(s) 268
Hpy188III TCNNGA 2 cut(s) 206, 239
Hpy99I CGWCG 1 cut(s) 192
HpyCH4III ACNGT 2 cut(s) 146, 203
HpyCH4IV ACGT 2 cut(s) 109, 190
HpyF10VI GCNNNNNNNGC 3 cut(s) 120, 129, 138
HpySE526I ACGT 2 cut(s) 109, 190
Hsp92I GRCGYC 1 cut(s) 190
HspAI GCGC 2 cut(s) 66, 121
Ksp22I TGATCA 1 cut(s) 79
Kzo9I GATC 5 cut(s) 72, 79, 175, 208, 217
LmnI GCTCC 1 cut(s) 125
LpnPI CCDG 7 cut(s) 8, 24, 63, 76, 151, 191, 209
MaeI CTAG 1 cut(s) 212
MaeII ACGT 2 cut(s) 109, 190
MaeIII GTNAC 2 cut(s) 6, 146
MalI GATC 5 cut(s) 74, 81, 177, 210, 219
MboI GATC 5 cut(s) 72, 79, 175, 208, 217
MboII GAAGA 1 cut(s) 68
MflI RGATCY 3 cut(s) 72, 208, 217
MhlI GDGCHC 1 cut(s) 130
MmeI TCCRAC 1 cut(s) 246
MnlI CCTC 3 cut(s) 102, 112, 246
MroXI GAANNNNTTC 1 cut(s) 246
MspI CCGG 2 cut(s) 50, 196
MvnI CGCG 2 cut(s) 123, 180
MwoI GCNNNNNNNGC 3 cut(s) 120, 129, 138
NdeII GATC 5 cut(s) 72, 79, 175, 208, 217
NlaIV GGNNCC 2 cut(s) 200, 219
NmeAIII GCCGAG 1 cut(s) 94
NmuCI GTSAC 2 cut(s) 6, 146
PcsI WCGNNNNNNNCGW 1 cut(s) 184
PdmI GAANNNNTTC 1 cut(s) 246
PkrI GCNGC 1 cut(s) 43
Psp1406I AACGTT 1 cut(s) 109
PspN4I GGNNCC 2 cut(s) 200, 219
PspPI GGNCC 2 cut(s) 25, 233
PsuI RGATCY 3 cut(s) 72, 208, 217
SatI GCNGC 1 cut(s) 42
Sau3AI GATC 5 cut(s) 72, 79, 175, 208, 217
Sau96I GGNCC 2 cut(s) 25, 233
SduI GDGCHC 1 cut(s) 130
SetI ASST 4 cut(s) 94, 112, 193, 256
SinI GGWCC 1 cut(s) 233
SmlI CTYRAG 1 cut(s) 237
SmoI CTYRAG 1 cut(s) 237
SsiI CCGC 3 cut(s) 42, 123, 184
SspMI CTAG 1 cut(s) 212
TaaI ACNGT 2 cut(s) 146, 203
TaiI ACGT 2 cut(s) 112, 193
TaqI TCGA 1 cut(s) 94
TauI GCSGC 1 cut(s) 44
TseFI GTSAC 2 cut(s) 6, 146
Tsp45I GTSAC 2 cut(s) 6, 146
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 65
VpaK11BI GGWCC 1 cut(s) 233
XmnI GAANNNNTTC 1 cut(s) 246
XspI CTAG 1 cut(s) 212
ZraI GACGTC 1 cut(s) 191
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.