Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0017442

Physical Location & Seq

Genomic Coordinates Reverse (-)

13597819 .. 13598204

Gene Structure 386 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG087400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGAAGTCACCGGCGATTGCTTTGGCCCAAAACCACAAAGCCGCTTCACCGGACGAAGACACCAGCGCCGAGATCCGTGATCATCATGAACCTCGACAACCGACCTTCGCTTCACGATCTGCAGAAGCTAAGAGGAAGGTAGCCGCCGATGTCCGGCGATGGGATCAGGGGTCACCGACGAGGCTGAGATCTGGGCGTGAGGTTGACATGCCCAGGATTGTACGGATTTCAGTCACTGACGACGACGCCACCGATTCCTCCAGCGACGACGAGCCGGAGTCGTTCTTCGGCCGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048316 GO:0048364 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048825 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

98

Amino Acids

10.92

Weight (kDa)

5.56

Isoelectric Point (pI)

73.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017442)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0029141
rosa_laevigata	RLG00000017780 RLG00000022989 RLG00000031076
rosa_multiflora	Rmu_sc0018451.1_g000002
rosa_samantha	Rh2BG228100 Rh5AG119100 Rh5CG128300 Rh5DG207100 Rh6BG087400 Rh7AG497800 Rh7BG244600 Rh7CG498000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	42, 144, 292
AclWI	GGATC	2 cut(s)	67, 171
AcoI	YGGCCR	1 cut(s)	289
AcyI	GRCGYC	1 cut(s)	246
AfaI	GTAC	1 cut(s)	222
AfiI	CCNNNNNNNGG	2 cut(s)	153, 160
AjnI	CCWGG	1 cut(s)	212
AluBI	AGCT	1 cut(s)	128
AluI	AGCT	1 cut(s)	128
AlwI	GGATC	2 cut(s)	67, 171
AlwNI	CAGNNNCTG	1 cut(s)	236
AoxI	GGCC	2 cut(s)	24, 289
AspLEI	GCGC	1 cut(s)	68
AspS9I	GGNCC	1 cut(s)	25
AsuHPI	GGTGA	2 cut(s)	39, 165
BbsI	GAAGAC	1 cut(s)	63
BccI	CCATC	1 cut(s)	153
BciT130I	CCWGG	1 cut(s)	214
BclI	TGATCA	1 cut(s)	79
BfaI	CTAG	1 cut(s)	295
BfmI	CTRYAG	1 cut(s)	120
BfoI	RGCGCY	1 cut(s)	69
BglII	AGATCT	1 cut(s)	188
BisI	GCNGC	3 cut(s)	42, 144, 292
BlsI	GCNGC	3 cut(s)	43, 145, 293
Bme1390I	CCNGG	1 cut(s)	214
BmgT120I	GGNCC	1 cut(s)	25
BmrFI	CCNGG	1 cut(s)	214
BpiI	GAAGAC	1 cut(s)	63
BpmI	CTGGAG	1 cut(s)	244
BsaHI	GRCGYC	1 cut(s)	246
BsaJI	CCNNGG	1 cut(s)	212
BsaWI	WCCGGW	1 cut(s)	49
Bsc4I	CCNNNNNNNGG	2 cut(s)	153, 160
Bse118I	RCCGGY	1 cut(s)	10
BseBI	CCWGG	1 cut(s)	214
BseDI	CCNNGG	1 cut(s)	212
BseLI	CCNNNNNNNGG	2 cut(s)	153, 160
BseMII	CTCAG	1 cut(s)	176
BseX3I	CGGCCG	1 cut(s)	289
Bsh1285I	CGRYCG	1 cut(s)	292
BshFI	GGCC	2 cut(s)	26, 291
BsiEI	CGRYCG	1 cut(s)	292
BsiSI	CCGG	4 cut(s)	11, 50, 154, 275
BslI	CCNNNNNNNGG	2 cut(s)	153, 160
BsnI	GGCC	2 cut(s)	26, 291
Bsp143I	GATC	5 cut(s)	72, 79, 116, 163, 188
BspACI	CCGC	3 cut(s)	42, 144, 292
BspANI	GGCC	2 cut(s)	26, 291
BspCNI	CTCAG	1 cut(s)	177
BspHI	TCATGA	1 cut(s)	85
BspMAI	CTGCAG	1 cut(s)	124
BspPI	GGATC	2 cut(s)	67, 171
BsrFI	RCCGGY	1 cut(s)	10
BssAI	RCCGGY	1 cut(s)	10
BssECI	CCNNGG	1 cut(s)	212
BssMI	GATC	5 cut(s)	72, 79, 116, 163, 188
BssNI	GRCGYC	1 cut(s)	246
Bst2UI	CCWGG	1 cut(s)	214
BstACI	GRCGYC	1 cut(s)	246
BstDEI	CTNAG	2 cut(s)	129, 185
BstEII	GGTNACC	1 cut(s)	171
BstH2I	RGCGCY	1 cut(s)	69
BstHHI	GCGC	1 cut(s)	68
BstKTI	GATC	5 cut(s)	75, 82, 119, 166, 191
BstMBI	GATC	5 cut(s)	72, 79, 116, 163, 188
BstMCI	CGRYCG	1 cut(s)	292
BstNI	CCWGG	1 cut(s)	214
BstNSI	RCATGY	1 cut(s)	211
BstPI	GGTNACC	1 cut(s)	171
BstSCI	CCNGG	1 cut(s)	212
BstSFI	CTRYAG	1 cut(s)	120
BstV2I	GAAGAC	1 cut(s)	63
BstX2I	RGATCY	2 cut(s)	72, 188
BstYI	RGATCY	2 cut(s)	72, 188
BstZI	CGGCCG	1 cut(s)	289
BsuRI	GGCC	2 cut(s)	26, 291
BtgZI	GCGATG	1 cut(s)	172
BtsIMutI	CAGTG	1 cut(s)	234
CaiI	CAGNNNCTG	1 cut(s)	236
CciI	TCATGA	1 cut(s)	85
CfoI	GCGC	1 cut(s)	68
Cfr10I	RCCGGY	1 cut(s)	10
Cfr13I	GGNCC	1 cut(s)	25
CseI	GACGC	1 cut(s)	254
Csp6I	GTAC	1 cut(s)	221
CviAII	CATG	2 cut(s)	86, 208
CviJI	RGCY	7 cut(s)	26, 41, 128, 143, 184, 274, 291
CviKI_1	RGCY	7 cut(s)	26, 41, 128, 143, 184, 274, 291
CviQI	GTAC	1 cut(s)	221
DdeI	CTNAG	2 cut(s)	129, 185
DpnI	GATC	5 cut(s)	74, 81, 118, 165, 190
DpnII	GATC	5 cut(s)	72, 79, 116, 163, 188
EaeI	YGGCCR	1 cut(s)	289
EagI	CGGCCG	1 cut(s)	289
EclXI	CGGCCG	1 cut(s)	289
Eco52I	CGGCCG	1 cut(s)	289
Eco91I	GGTNACC	1 cut(s)	171
EcoO65I	GGTNACC	1 cut(s)	171
EcoRII	CCWGG	1 cut(s)	212
FaeI	CATG	2 cut(s)	89, 211
FaiI	YATR	2 cut(s)	87, 209
FatI	CATG	2 cut(s)	85, 207
FbaI	TGATCA	1 cut(s)	79
Fnu4HI	GCNGC	3 cut(s)	42, 144, 292
Fsp4HI	GCNGC	3 cut(s)	42, 144, 292
FspBI	CTAG	1 cut(s)	295
GlaI	GCGC	1 cut(s)	67
GluI	GCNGC	3 cut(s)	42, 144, 292
GsuI	CTGGAG	1 cut(s)	244
HaeII	RGCGCY	1 cut(s)	69
HaeIII	GGCC	2 cut(s)	26, 291
HapII	CCGG	4 cut(s)	11, 50, 154, 275
HgaI	GACGC	1 cut(s)	254
HhaI	GCGC	1 cut(s)	68
Hin1I	GRCGYC	1 cut(s)	246
Hin1II	CATG	2 cut(s)	89, 211
Hin6I	GCGC	1 cut(s)	66
HinP1I	GCGC	1 cut(s)	66
HincII	GTYRAC	1 cut(s)	205
HindII	GTYRAC	1 cut(s)	205
HinfI	GANTC	2 cut(s)	254, 278
HpaII	CCGG	4 cut(s)	11, 50, 154, 275
HphI	GGTGA	2 cut(s)	39, 165
Hpy166II	GTNNAC	1 cut(s)	205
Hpy188III	TCNNGA	2 cut(s)	86, 114
Hpy8I	GTNNAC	1 cut(s)	205
Hpy99I	CGWCG	5 cut(s)	181, 245, 248, 269, 272
HpyAV	CCTTC	2 cut(s)	115, 130
HpyCH4V	TGCA	1 cut(s)	122
HpyF3I	CTNAG	2 cut(s)	129, 185
Hsp92I	GRCGYC	1 cut(s)	246
Hsp92II	CATG	2 cut(s)	89, 211
HspAI	GCGC	1 cut(s)	66
Ksp22I	TGATCA	1 cut(s)	79
Kzo9I	GATC	5 cut(s)	72, 79, 116, 163, 188
MaeI	CTAG	1 cut(s)	295
MaeIII	GTNAC	3 cut(s)	6, 171, 232
MalI	GATC	5 cut(s)	74, 81, 118, 165, 190
MboI	GATC	5 cut(s)	72, 79, 116, 163, 188
MboII	GAAGA	2 cut(s)	68, 277
MflI	RGATCY	2 cut(s)	72, 188
MlyI	GAGTC	1 cut(s)	287
MnlI	CCTC	5 cut(s)	102, 126, 174, 193, 268
MspI	CCGG	4 cut(s)	11, 50, 154, 275
MspR9I	CCNGG	1 cut(s)	214
MvaI	CCWGG	1 cut(s)	214
NdeII	GATC	5 cut(s)	72, 79, 116, 163, 188
NlaIII	CATG	2 cut(s)	89, 211
NmeAIII	GCCGAG	1 cut(s)	94
NmuCI	GTSAC	3 cut(s)	6, 171, 232
NspI	RCATGY	1 cut(s)	211
PagI	TCATGA	1 cut(s)	85
PcsI	WCGNNNNNNNCGW	1 cut(s)	249
PfeI	GAWTC	1 cut(s)	254
PkrI	GCNGC	3 cut(s)	43, 145, 293
PleI	GAGTC	1 cut(s)	286
PpsI	GAGTC	1 cut(s)	286
Psp6I	CCWGG	1 cut(s)	212
PspEI	GGTNACC	1 cut(s)	171
PspGI	CCWGG	1 cut(s)	212
PspPI	GGNCC	1 cut(s)	25
PstI	CTGCAG	1 cut(s)	124
PstNI	CAGNNNCTG	1 cut(s)	236
PsuI	RGATCY	2 cut(s)	72, 188
RsaI	GTAC	1 cut(s)	222
RsaNI	GTAC	1 cut(s)	221
SatI	GCNGC	3 cut(s)	42, 144, 292
Sau3AI	GATC	5 cut(s)	72, 79, 116, 163, 188
Sau96I	GGNCC	1 cut(s)	25
SchI	GAGTC	1 cut(s)	287
ScrFI	CCNGG	1 cut(s)	214
SetI	ASST	5 cut(s)	94, 107, 130, 141, 204
SfcI	CTRYAG	1 cut(s)	120
SgrAI	CRCCGGYG	1 cut(s)	10
SsiI	CCGC	3 cut(s)	42, 144, 292
SspMI	CTAG	1 cut(s)	295
StyD4I	CCNGG	1 cut(s)	212
TaqI	TCGA	1 cut(s)	94
TauI	GCSGC	3 cut(s)	44, 146, 294
TfiI	GAWTC	1 cut(s)	254
TscAI	CASTG	1 cut(s)	241
TseFI	GTSAC	3 cut(s)	6, 171, 232
Tsp45I	GTSAC	3 cut(s)	6, 171, 232
TspDTI	ATGAA	2 cut(s)	17, 102
TspGWI	ACGGA	2 cut(s)	65, 238
TspRI	CASTG	1 cut(s)	241
XceI	RCATGY	1 cut(s)	211
XspI	CTAG	1 cut(s)	295

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.