RLG00000031076

Phd finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0017442
Physical Location & Seq
Forward (+)
1793771 .. 1795656
1886 bp
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UTR
Exon/CDS
Intron
RLM00000031076

Sequence Viewer

Length: 507 bp
ATGGACGAAGAAGGCGTGCCTCTTACCGCCTTCCGCGAGGTCTCGCTCGTCCAGATGCTGTCCCAGTCTCTCTACATGGTTCACCTCCTCTGCGTCGAACACGTAGACAACAAGAGGAGGAAGGTCGCCGCCGATCTGCCCGACCTGTTCACCTTCCCTCCTCCTCCGGAGTCGCCGGAAGCCTTCTGTGACAACTTGCGTGGCTTCCTCGGCCACCACGCTCGCTTCTTCCCCTCCCTGTTGACCTGGCAGATCACCATCCGGGTTGACCCCAGCGTCGTCCTTCCCTTGGATATCGTCGAGGAGGACATCACGCGCTCCAGGCAATCCGTCTACTGTGACCAGTGCCGAGTTGTGGTTTATGGTACCTCCGGAAGGCTCTGTGCCCCTAGTCTTGGCATGGTGGTCTTGGTAGTGGTCTCTAGTGCTCAGTCTGTGTGCACAGTCGTTATGTGTGTGGGATGCCGGATTGTGGCGAAGCAAGATCATGGTGGGATGAGATGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PHD

Protein Analysis

169

Amino Acids

18.73

Weight (kDa)

5.92

Isoelectric Point (pI)

60.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 275
Acc65I GGTACC 1 cut(s) 365
AccB1I GGYRCC 1 cut(s) 365
AccI GTMKAC 2 cut(s) 105, 333
AccII CGCG 2 cut(s) 36, 316
AccIII TCCGGA 2 cut(s) 166, 371
AciI CCGC 3 cut(s) 27, 34, 129
AcoI YGGCCR 1 cut(s) 211
AfaI GTAC 1 cut(s) 367
AfiI CCNNNNNNNGG 5 cut(s) 289, 355, 375, 395, 472
AflIII ACRYGT 1 cut(s) 100
AjnI CCWGG 2 cut(s) 245, 320
Alw21I GWGCWC 2 cut(s) 430, 443
Alw26I GTCTC 3 cut(s) 46, 72, 424
Alw44I GTGCAC 1 cut(s) 439
AlwNI CAGNNNCTG 1 cut(s) 58
Aor13HI TCCGGA 2 cut(s) 166, 371
AoxI GGCC 1 cut(s) 211
ApaLI GTGCAC 1 cut(s) 439
Asp718I GGTACC 1 cut(s) 365
AspLEI GCGC 1 cut(s) 318
AsuC2I CCSGG 1 cut(s) 263
AsuHPI GGTGA 3 cut(s) 74, 142, 247
BaeGI GKGCMC 2 cut(s) 388, 443
BanI GGYRCC 1 cut(s) 365
Bbv12I GWGCWC 2 cut(s) 430, 443
BccI CCATC 2 cut(s) 266, 495
BciT130I CCWGG 2 cut(s) 247, 322
BcnI CCSGG 1 cut(s) 263
BcoDI GTCTC 3 cut(s) 46, 72, 424
BfaI CTAG 2 cut(s) 390, 423
BisI GCNGC 1 cut(s) 129
BlsI GCNGC 1 cut(s) 130
Bme1390I CCNGG 3 cut(s) 247, 263, 322
BmiI GGNNCC 1 cut(s) 367
BmrFI CCNGG 3 cut(s) 247, 263, 322
BmrI ACTGGG 1 cut(s) 58
BmsI GCATC 2 cut(s) 45, 452
BmuI ACTGGG 1 cut(s) 58
BpmI CTGGAG 1 cut(s) 304
BpuMI CCSGG 1 cut(s) 263
BsaAI YACGTR 1 cut(s) 103
BsaBI GATNNNNATC 1 cut(s) 257
BsaI GGTCTC 2 cut(s) 46, 424
BsaJI CCNNGG 2 cut(s) 208, 288
BsaWI WCCGGW 2 cut(s) 166, 371
BsaXI ACNNNNNCTCC 2 cut(s) 142, 172
Bsc4I CCNNNNNNNGG 5 cut(s) 289, 355, 375, 395, 472
Bse1I ACTGG 2 cut(s) 64, 343
Bse8I GATNNNNATC 1 cut(s) 257
BseAI TCCGGA 2 cut(s) 166, 371
BseBI CCWGG 2 cut(s) 247, 322
BseDI CCNNGG 2 cut(s) 208, 288
BseGI GGATG 3 cut(s) 258, 467, 501
BseJI GATNNNNATC 1 cut(s) 257
BseLI CCNNNNNNNGG 5 cut(s) 289, 355, 375, 395, 472
BseMII CTCAG 1 cut(s) 443
BseNI ACTGG 2 cut(s) 64, 343
BseRI GAGGAG 5 cut(s) 77, 130, 150, 153, 317
BseSI GKGCMC 2 cut(s) 388, 443
BseYI CCCAGC 1 cut(s) 272
Bsh1236I CGCG 2 cut(s) 36, 316
BshFI GGCC 1 cut(s) 213
BshNI GGYRCC 1 cut(s) 365
BsiHKAI GWGCWC 2 cut(s) 430, 443
BsiSI CCGG 5 cut(s) 167, 176, 262, 372, 466
BslFI GGGAC 1 cut(s) 46
BslI CCNNNNNNNGG 5 cut(s) 289, 355, 375, 395, 472
BsmAI GTCTC 3 cut(s) 46, 72, 424
BsmFI GGGAC 1 cut(s) 46
BsnI GGCC 1 cut(s) 213
Bso31I GGTCTC 2 cut(s) 46, 424
Bsp1286I GDGCHC 3 cut(s) 388, 430, 443
Bsp13I TCCGGA 2 cut(s) 166, 371
Bsp143I GATC 3 cut(s) 133, 252, 484
BspACI CCGC 3 cut(s) 27, 34, 129
BspANI GGCC 1 cut(s) 213
BspCNI CTCAG 1 cut(s) 442
BspEI TCCGGA 2 cut(s) 166, 371
BspFNI CGCG 2 cut(s) 36, 316
BspLI GGNNCC 1 cut(s) 367
BspT107I GGYRCC 1 cut(s) 365
BspTNI GGTCTC 2 cut(s) 46, 424
BsrI ACTGG 2 cut(s) 64, 343
BssECI CCNNGG 2 cut(s) 208, 288
BssMI GATC 3 cut(s) 133, 252, 484
BssT1I CCWWGG 1 cut(s) 288
Bst2UI CCWGG 2 cut(s) 247, 322
Bst4CI ACNGT 2 cut(s) 338, 445
BstBAI YACGTR 1 cut(s) 103
BstC8I GCNNGC 2 cut(s) 17, 223
BstDEI CTNAG 1 cut(s) 429
BstENI CCTNNNNNAGG 1 cut(s) 373
BstF5I GGATG 3 cut(s) 258, 467, 501
BstFNI CGCG 2 cut(s) 36, 316
BstHHI GCGC 1 cut(s) 318
BstKTI GATC 3 cut(s) 136, 255, 487
BstMAI GTCTC 3 cut(s) 46, 72, 424
BstMBI GATC 3 cut(s) 133, 252, 484
BstMWI GCNNNNNNNGC 2 cut(s) 210, 322
BstNI CCWGG 2 cut(s) 247, 322
BstSCI CCNGG 3 cut(s) 245, 261, 320
BstSLI GKGCMC 2 cut(s) 388, 443
BstUI CGCG 2 cut(s) 36, 316
BsuRI GGCC 1 cut(s) 213
BtsCI GGATG 3 cut(s) 258, 467, 501
BtsIMutI CAGTG 1 cut(s) 350
Cac8I GCNNGC 2 cut(s) 17, 223
CaiI CAGNNNCTG 1 cut(s) 58
CfoI GCGC 1 cut(s) 318
CseI GACGC 2 cut(s) 82, 265
Csp6I GTAC 1 cut(s) 366
CspCI CAANNNNNGTGG 2 cut(s) 181, 216
CviAII CATG 3 cut(s) 76, 400, 488
CviJI RGCY 4 cut(s) 182, 204, 213, 379
CviKI_1 RGCY 4 cut(s) 182, 204, 213, 379
CviQI GTAC 1 cut(s) 366
DdeI CTNAG 1 cut(s) 429
DpnI GATC 3 cut(s) 135, 254, 486
DpnII GATC 3 cut(s) 133, 252, 484
DrdI GACNNNNNNGTC 1 cut(s) 275
DseDI GACNNNNNNGTC 1 cut(s) 275
EaeI YGGCCR 1 cut(s) 211
Eco130I CCWWGG 1 cut(s) 288
Eco31I GGTCTC 2 cut(s) 46, 424
Eco32I GATATC 1 cut(s) 295
EcoNI CCTNNNNNAGG 1 cut(s) 373
EcoRII CCWGG 2 cut(s) 245, 320
EcoRV GATATC 1 cut(s) 295
EcoT14I CCWWGG 1 cut(s) 288
ErhI CCWWGG 1 cut(s) 288
FaeI CATG 3 cut(s) 79, 403, 491
FaiI YATR 5 cut(s) 77, 363, 401, 452, 489
FaqI GGGAC 1 cut(s) 46
FatI CATG 3 cut(s) 75, 399, 487
FblI GTMKAC 2 cut(s) 105, 333
Fnu4HI GCNGC 1 cut(s) 129
FokI GGATG 2 cut(s) 245, 474
Fsp4HI GCNGC 1 cut(s) 129
FspBI CTAG 2 cut(s) 390, 423
GlaI GCGC 1 cut(s) 317
GluI GCNGC 1 cut(s) 129
GsaI CCCAGC 1 cut(s) 276
GsuI CTGGAG 1 cut(s) 304
HaeIII GGCC 1 cut(s) 213
HapII CCGG 5 cut(s) 167, 176, 262, 372, 466
HgaI GACGC 2 cut(s) 82, 265
HhaI GCGC 1 cut(s) 318
Hin1II CATG 3 cut(s) 79, 403, 491
Hin6I GCGC 1 cut(s) 316
HinP1I GCGC 1 cut(s) 316
HincII GTYRAC 2 cut(s) 243, 268
HindII GTYRAC 2 cut(s) 243, 268
HinfI GANTC 1 cut(s) 170
HpaII CCGG 5 cut(s) 167, 176, 262, 372, 466
HphI GGTGA 3 cut(s) 74, 142, 247
Hpy166II GTNNAC 7 cut(s) 82, 106, 150, 243, 268, 334, 441
Hpy188III TCNNGA 3 cut(s) 52, 167, 372
Hpy8I GTNNAC 7 cut(s) 82, 106, 150, 243, 268, 334, 441
Hpy99I CGWCG 3 cut(s) 98, 281, 302
HpyAV CCTTC 7 cut(s) 5, 40, 115, 163, 193, 293, 369
HpyCH4III ACNGT 2 cut(s) 338, 445
HpyCH4IV ACGT 1 cut(s) 102
HpyCH4V TGCA 1 cut(s) 441
HpyF10VI GCNNNNNNNGC 2 cut(s) 210, 322
HpyF3I CTNAG 1 cut(s) 429
HpySE526I ACGT 1 cut(s) 102
Hsp92II CATG 3 cut(s) 79, 403, 491
HspAI GCGC 1 cut(s) 316
Kpn2I TCCGGA 2 cut(s) 166, 371
KpnI GGTACC 1 cut(s) 369
Kzo9I GATC 3 cut(s) 133, 252, 484
LmnI GCTCC 1 cut(s) 323
LweI GCATC 2 cut(s) 45, 452
MaeI CTAG 2 cut(s) 390, 423
MaeII ACGT 1 cut(s) 102
MaeIII GTNAC 2 cut(s) 188, 338
MalI GATC 3 cut(s) 135, 254, 486
MboI GATC 3 cut(s) 133, 252, 484
MboII GAAGA 2 cut(s) 20, 220
MhlI GDGCHC 3 cut(s) 388, 430, 443
MlyI GAGTC 1 cut(s) 179
MroI TCCGGA 2 cut(s) 166, 371
MspI CCGG 5 cut(s) 167, 176, 262, 372, 466
MspR9I CCNGG 3 cut(s) 247, 263, 322
MvaI CCWGG 2 cut(s) 247, 322
MvnI CGCG 2 cut(s) 36, 316
MwoI GCNNNNNNNGC 2 cut(s) 210, 322
NciI CCSGG 1 cut(s) 263
NdeII GATC 3 cut(s) 133, 252, 484
NlaIII CATG 3 cut(s) 79, 403, 491
NlaIV GGNNCC 1 cut(s) 367
NmeAIII GCCGAG 2 cut(s) 189, 374
NmuCI GTSAC 2 cut(s) 188, 338
PcsI WCGNNNNNNNCGW 1 cut(s) 12
PkrI GCNGC 1 cut(s) 130
PleI GAGTC 1 cut(s) 178
PpsI GAGTC 1 cut(s) 178
Ppu21I YACGTR 1 cut(s) 103
Psp6I CCWGG 2 cut(s) 245, 320
PspFI CCCAGC 1 cut(s) 272
PspGI CCWGG 2 cut(s) 245, 320
PspN4I GGNNCC 1 cut(s) 367
PstNI CAGNNNCTG 1 cut(s) 58
RsaI GTAC 1 cut(s) 367
RsaNI GTAC 1 cut(s) 366
SatI GCNGC 1 cut(s) 129
Sau3AI GATC 3 cut(s) 133, 252, 484
SchI GAGTC 1 cut(s) 179
ScrFI CCNGG 3 cut(s) 247, 263, 322
SduI GDGCHC 3 cut(s) 388, 430, 443
SetI ASST 8 cut(s) 42, 87, 105, 126, 147, 155, 248, 371
SfaNI GCATC 2 cut(s) 45, 452
SsiI CCGC 3 cut(s) 27, 34, 129
SspMI CTAG 2 cut(s) 390, 423
StyD4I CCNGG 3 cut(s) 245, 261, 320
StyI CCWWGG 1 cut(s) 288
TaaI ACNGT 2 cut(s) 338, 445
TaiI ACGT 1 cut(s) 105
TaqI TCGA 2 cut(s) 96, 300
TauI GCSGC 1 cut(s) 131
TscAI CASTG 1 cut(s) 350
TseFI GTSAC 2 cut(s) 188, 338
Tsp45I GTSAC 2 cut(s) 188, 338
TspGWI ACGGA 1 cut(s) 319
TspRI CASTG 1 cut(s) 350
VneI GTGCAC 1 cut(s) 439
XagI CCTNNNNNAGG 1 cut(s) 373
XmiI GTMKAC 2 cut(s) 105, 333
XspI CTAG 2 cut(s) 390, 423
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.