RLG00000022989

Phd finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0017442
Physical Location & Seq
Reverse (-)
16301343 .. 16301848
506 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000022989

Sequence Viewer

Length: 309 bp
ATGGTTGTGAACGAGGCTACCAAGAAAGCCAGGAGGAAGGTCGCCGCCGATCTGCCCGACCTGTTCACCTTCCCTCCTCCGCCAGAGTCGCCGAAAACCTTCCTCAGCTTCCTCGCTCTTCCCCTCCCTGCTGACCTAGCAGATCGCCCTCCGGGTTGCCCCGCCGTCGTCCTTCCCTTGGATATCGTCGAGGAGGACGTCAGGCGATCCATCTACTATGACCAGTGCCGAGTCGTGGAAAAAACTCATATTAATTTTGCCCTTATCTCGTCCATGGCAAAAGAATTATCTTCTCAGATCATATCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PHD

Protein Analysis

103

Amino Acids

11.31

Weight (kDa)

5.75

Isoelectric Point (pI)

72.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 201
AciI CCGC 3 cut(s) 45, 80, 162
AclWI GGATC 1 cut(s) 201
AcyI GRCGYC 1 cut(s) 198
AfiI CCNNNNNNNGG 2 cut(s) 178, 235
AjnI CCWGG 1 cut(s) 29
AluBI AGCT 1 cut(s) 108
AluI AGCT 1 cut(s) 108
AlwI GGATC 1 cut(s) 201
AseI ATTAAT 1 cut(s) 252
Asp700I GAANNNNTTC 1 cut(s) 98
AsuC2I CCSGG 1 cut(s) 153
AsuHPI GGTGA 1 cut(s) 58
BbvCI CCTCAGC 1 cut(s) 104
BccI CCATC 1 cut(s) 218
BceAI ACGGC 1 cut(s) 149
BciT130I CCWGG 1 cut(s) 31
BcnI CCSGG 1 cut(s) 153
BfaI CTAG 1 cut(s) 137
BisI GCNGC 1 cut(s) 45
BlsI GCNGC 1 cut(s) 46
Bme1390I CCNGG 2 cut(s) 31, 153
BmrFI CCNGG 2 cut(s) 31, 153
Bpu10I CCTNAGC 1 cut(s) 104
BpuMI CCSGG 1 cut(s) 153
BsaHI GRCGYC 1 cut(s) 198
BsaJI CCNNGG 2 cut(s) 177, 273
BsaXI ACNNNNNCTCC 2 cut(s) 58, 88
Bsc4I CCNNNNNNNGG 2 cut(s) 178, 235
Bse1I ACTGG 1 cut(s) 223
BseBI CCWGG 1 cut(s) 31
BseDI CCNNGG 2 cut(s) 177, 273
BseLI CCNNNNNNNGG 2 cut(s) 178, 235
BseMII CTCAG 2 cut(s) 118, 308
BseNI ACTGG 1 cut(s) 223
BseRI GAGGAG 2 cut(s) 66, 206
BsiSI CCGG 1 cut(s) 152
BslI CCNNNNNNNGG 2 cut(s) 178, 235
Bsp143I GATC 4 cut(s) 49, 142, 206, 297
Bsp19I CCATGG 1 cut(s) 273
BspACI CCGC 3 cut(s) 45, 80, 162
BspCNI CTCAG 2 cut(s) 117, 307
BspPI GGATC 1 cut(s) 201
BspQI GCTCTTC 1 cut(s) 123
BsrI ACTGG 1 cut(s) 223
BssECI CCNNGG 2 cut(s) 177, 273
BssMI GATC 4 cut(s) 49, 142, 206, 297
BssNI GRCGYC 1 cut(s) 198
BssT1I CCWWGG 2 cut(s) 177, 273
Bst2UI CCWGG 1 cut(s) 31
Bst6I CTCTTC 1 cut(s) 123
BstACI GRCGYC 1 cut(s) 198
BstDEI CTNAG 3 cut(s) 104, 294, 306
BstDSI CCRYGG 1 cut(s) 273
BstKTI GATC 4 cut(s) 52, 145, 209, 300
BstMBI GATC 4 cut(s) 49, 142, 206, 297
BstMWI GCNNNNNNNGC 2 cut(s) 88, 137
BstNI CCWGG 1 cut(s) 31
BstSCI CCNGG 2 cut(s) 29, 151
BtgI CCRYGG 1 cut(s) 273
BtsIMutI CAGTG 1 cut(s) 230
CviAII CATG 1 cut(s) 274
CviJI RGCY 3 cut(s) 17, 29, 108
CviKI_1 RGCY 3 cut(s) 17, 29, 108
DdeI CTNAG 3 cut(s) 104, 294, 306
DpnI GATC 4 cut(s) 51, 144, 208, 299
DpnII GATC 4 cut(s) 49, 142, 206, 297
Eam1104I CTCTTC 1 cut(s) 123
EarI CTCTTC 1 cut(s) 123
EciI GGCGGA 1 cut(s) 69
Eco130I CCWWGG 2 cut(s) 177, 273
Eco32I GATATC 1 cut(s) 184
EcoRII CCWGG 1 cut(s) 29
EcoRV GATATC 1 cut(s) 184
EcoT14I CCWWGG 2 cut(s) 177, 273
ErhI CCWWGG 2 cut(s) 177, 273
FaeI CATG 1 cut(s) 277
FaiI YATR 4 cut(s) 219, 249, 275, 302
FatI CATG 1 cut(s) 273
FauI CCCGC 1 cut(s) 169
Fnu4HI GCNGC 1 cut(s) 45
Fsp4HI GCNGC 1 cut(s) 45
FspBI CTAG 1 cut(s) 137
GluI GCNGC 1 cut(s) 45
HapII CCGG 1 cut(s) 152
Hin1I GRCGYC 1 cut(s) 198
Hin1II CATG 1 cut(s) 277
HinfI GANTC 2 cut(s) 86, 231
HpaII CCGG 1 cut(s) 152
HphI GGTGA 1 cut(s) 58
Hpy166II GTNNAC 2 cut(s) 10, 66
Hpy188I TCNGA 1 cut(s) 297
Hpy8I GTNNAC 2 cut(s) 10, 66
Hpy99I CGWCG 2 cut(s) 170, 191
HpyAV CCTTC 4 cut(s) 31, 79, 109, 182
HpyCH4IV ACGT 1 cut(s) 198
HpyF10VI GCNNNNNNNGC 2 cut(s) 88, 137
HpyF3I CTNAG 3 cut(s) 104, 294, 306
HpySE526I ACGT 1 cut(s) 198
Hsp92I GRCGYC 1 cut(s) 198
Hsp92II CATG 1 cut(s) 277
Kzo9I GATC 4 cut(s) 49, 142, 206, 297
LguI GCTCTTC 1 cut(s) 123
LpnPI CCDG 8 cut(s) 16, 43, 74, 96, 141, 165, 187, 236
MaeI CTAG 1 cut(s) 137
MaeII ACGT 1 cut(s) 198
MalI GATC 4 cut(s) 51, 144, 208, 299
MboI GATC 4 cut(s) 49, 142, 206, 297
MboII GAAGA 2 cut(s) 110, 282
MluCI AATT 2 cut(s) 253, 284
MlyI GAGTC 2 cut(s) 95, 240
MroXI GAANNNNTTC 1 cut(s) 98
MseI TTAA 1 cut(s) 252
MspI CCGG 1 cut(s) 152
MspR9I CCNGG 2 cut(s) 31, 153
MvaI CCWGG 1 cut(s) 31
MwoI GCNNNNNNNGC 2 cut(s) 88, 137
NciI CCSGG 1 cut(s) 153
NcoI CCATGG 1 cut(s) 273
NdeII GATC 4 cut(s) 49, 142, 206, 297
NlaIII CATG 1 cut(s) 277
NmeAIII GCCGAG 1 cut(s) 254
PciSI GCTCTTC 1 cut(s) 123
PcsI WCGNNNNNNNCGW 1 cut(s) 195
PdmI GAANNNNTTC 1 cut(s) 98
PkrI GCNGC 1 cut(s) 46
PleI GAGTC 2 cut(s) 94, 239
PpsI GAGTC 2 cut(s) 94, 239
PshBI ATTAAT 1 cut(s) 252
Psp6I CCWGG 1 cut(s) 29
PspGI CCWGG 1 cut(s) 29
SapI GCTCTTC 1 cut(s) 123
SaqAI TTAA 1 cut(s) 252
SatI GCNGC 1 cut(s) 45
Sau3AI GATC 4 cut(s) 49, 142, 206, 297
SchI GAGTC 2 cut(s) 95, 240
ScrFI CCNGG 2 cut(s) 31, 153
SetI ASST 7 cut(s) 42, 63, 71, 101, 110, 138, 201
Sse9I AATT 2 cut(s) 253, 284
SsiI CCGC 3 cut(s) 45, 80, 162
SspMI CTAG 1 cut(s) 137
StyD4I CCNGG 2 cut(s) 29, 151
StyI CCWWGG 2 cut(s) 177, 273
TaiI ACGT 1 cut(s) 201
TaqI TCGA 1 cut(s) 189
TasI AATT 2 cut(s) 253, 284
TauI GCSGC 1 cut(s) 47
Tru1I TTAA 1 cut(s) 252
Tru9I TTAA 1 cut(s) 252
TscAI CASTG 1 cut(s) 230
TspRI CASTG 1 cut(s) 230
VspI ATTAAT 1 cut(s) 252
XmnI GAANNNNTTC 1 cut(s) 98
XspI CTAG 1 cut(s) 137
ZraI GACGTC 1 cut(s) 199
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.