Rh5AG119100

Phd finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0017442
Physical Location & Seq
Forward (+)
11084378 .. 11084638
261 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG119100.1

Sequence Viewer

Length: 261 bp
ATGGTTTTTTCGACAAAGCTCAGATCTACCATGGTTGTGAACGTGGCTACCAAGAGAGCCAGGAGGAAGGTCGCCGCTGATCTGCCCGACCTGTTCACTTTCCCTCCTCCTCCGGAGTCGCCGGAAGCCTTCCTCGACTTCCTTGCTCTTCCCCTCCCTGCTGGCCTGGCAGATCGCCCTCCGGGTCGACCCCACTGTCGTCCTTCCCTAGGATATCGTCGAGGAGGACGTCATGCGCTCCAGGCGATCCATCTACTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PHD

Protein Analysis

86

Amino Acids

9.48

Weight (kDa)

11.16

Isoelectric Point (pI)

74.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 195
AatII GACGTC 1 cut(s) 232
AccI GTMKAC 1 cut(s) 187
AccIII TCCGGA 1 cut(s) 112
AciI CCGC 1 cut(s) 75
AclWI GGATC 1 cut(s) 241
AcyI GRCGYC 1 cut(s) 229
AfiI CCNNNNNNNGG 1 cut(s) 209
AjnI CCWGG 3 cut(s) 59, 165, 240
AluBI AGCT 1 cut(s) 19
AluI AGCT 1 cut(s) 19
AlwI GGATC 1 cut(s) 241
Aor13HI TCCGGA 1 cut(s) 112
AoxI GGCC 1 cut(s) 163
AspA2I CCTAGG 1 cut(s) 208
AspLEI GCGC 1 cut(s) 238
AsuC2I CCSGG 1 cut(s) 183
AvrII CCTAGG 1 cut(s) 208
BccI CCATC 1 cut(s) 258
BcgI CGANNNNNNTGC 2 cut(s) 125, 159
BciT130I CCWGG 3 cut(s) 61, 167, 242
BcnI CCSGG 1 cut(s) 183
BfaI CTAG 1 cut(s) 209
BglII AGATCT 1 cut(s) 23
BisI GCNGC 1 cut(s) 75
BlnI CCTAGG 1 cut(s) 208
BlsI GCNGC 1 cut(s) 76
Bme1390I CCNGG 4 cut(s) 61, 167, 183, 242
BmrFI CCNGG 4 cut(s) 61, 167, 183, 242
BpmI CTGGAG 1 cut(s) 224
BpuMI CCSGG 1 cut(s) 183
BsaHI GRCGYC 1 cut(s) 229
BsaJI CCNNGG 2 cut(s) 30, 208
BsaWI WCCGGW 1 cut(s) 112
BsaXI ACNNNNNCTCC 2 cut(s) 88, 118
Bsc4I CCNNNNNNNGG 1 cut(s) 209
BseAI TCCGGA 1 cut(s) 112
BseBI CCWGG 3 cut(s) 61, 167, 242
BseDI CCNNGG 2 cut(s) 30, 208
BseLI CCNNNNNNNGG 1 cut(s) 209
BseMII CTCAG 1 cut(s) 34
BseRI GAGGAG 3 cut(s) 96, 99, 237
BshFI GGCC 1 cut(s) 165
BsiSI CCGG 3 cut(s) 113, 122, 182
BslI CCNNNNNNNGG 1 cut(s) 209
BsnI GGCC 1 cut(s) 165
Bsp13I TCCGGA 1 cut(s) 112
Bsp143I GATC 4 cut(s) 23, 79, 172, 246
Bsp19I CCATGG 1 cut(s) 30
BspACI CCGC 1 cut(s) 75
BspANI GGCC 1 cut(s) 165
BspCNI CTCAG 1 cut(s) 33
BspEI TCCGGA 1 cut(s) 112
BspPI GGATC 1 cut(s) 241
BspQI GCTCTTC 1 cut(s) 153
BssECI CCNNGG 2 cut(s) 30, 208
BssMI GATC 4 cut(s) 23, 79, 172, 246
BssNI GRCGYC 1 cut(s) 229
BssT1I CCWWGG 2 cut(s) 30, 208
Bst2UI CCWGG 3 cut(s) 61, 167, 242
Bst4CI ACNGT 2 cut(s) 197, 258
Bst6I CTCTTC 1 cut(s) 153
BstACI GRCGYC 1 cut(s) 229
BstC8I GCNNGC 1 cut(s) 163
BstDEI CTNAG 1 cut(s) 20
BstDSI CCRYGG 1 cut(s) 30
BstENI CCTNNNNNAGG 1 cut(s) 207
BstHHI GCGC 1 cut(s) 238
BstKTI GATC 4 cut(s) 26, 82, 175, 249
BstMBI GATC 4 cut(s) 23, 79, 172, 246
BstMWI GCNNNNNNNGC 2 cut(s) 167, 242
BstNI CCWGG 3 cut(s) 61, 167, 242
BstSCI CCNGG 4 cut(s) 59, 165, 181, 240
BstX2I RGATCY 1 cut(s) 23
BstYI RGATCY 1 cut(s) 23
BsuRI GGCC 1 cut(s) 165
BtgI CCRYGG 1 cut(s) 30
BtsIMutI CAGTG 1 cut(s) 193
Cac8I GCNNGC 1 cut(s) 163
CfoI GCGC 1 cut(s) 238
CviAII CATG 2 cut(s) 31, 233
CviJI RGCY 5 cut(s) 19, 47, 59, 128, 165
CviKI_1 RGCY 5 cut(s) 19, 47, 59, 128, 165
DdeI CTNAG 1 cut(s) 20
DpnI GATC 4 cut(s) 25, 81, 174, 248
DpnII GATC 4 cut(s) 23, 79, 172, 246
DrdI GACNNNNNNGTC 1 cut(s) 195
DseDI GACNNNNNNGTC 1 cut(s) 195
Eam1104I CTCTTC 1 cut(s) 153
EarI CTCTTC 1 cut(s) 153
Eco130I CCWWGG 2 cut(s) 30, 208
Eco32I GATATC 1 cut(s) 215
EcoNI CCTNNNNNAGG 1 cut(s) 207
EcoRII CCWGG 3 cut(s) 59, 165, 240
EcoRV GATATC 1 cut(s) 215
EcoT14I CCWWGG 2 cut(s) 30, 208
ErhI CCWWGG 2 cut(s) 30, 208
FaeI CATG 2 cut(s) 34, 236
FaiI YATR 2 cut(s) 32, 234
FatI CATG 2 cut(s) 30, 232
FblI GTMKAC 1 cut(s) 187
Fnu4HI GCNGC 1 cut(s) 75
Fsp4HI GCNGC 1 cut(s) 75
FspBI CTAG 1 cut(s) 209
GlaI GCGC 1 cut(s) 237
GluI GCNGC 1 cut(s) 75
GsuI CTGGAG 1 cut(s) 224
HaeIII GGCC 1 cut(s) 165
HapII CCGG 3 cut(s) 113, 122, 182
HhaI GCGC 1 cut(s) 238
Hin1I GRCGYC 1 cut(s) 229
Hin1II CATG 2 cut(s) 34, 236
Hin6I GCGC 1 cut(s) 236
HinP1I GCGC 1 cut(s) 236
HincII GTYRAC 1 cut(s) 188
HindII GTYRAC 1 cut(s) 188
HinfI GANTC 1 cut(s) 116
HpaII CCGG 3 cut(s) 113, 122, 182
Hpy166II GTNNAC 3 cut(s) 40, 96, 188
Hpy188I TCNGA 1 cut(s) 23
Hpy188III TCNNGA 1 cut(s) 113
Hpy8I GTNNAC 3 cut(s) 40, 96, 188
Hpy99I CGWCG 1 cut(s) 222
HpyAV CCTTC 3 cut(s) 61, 139, 213
HpyCH4III ACNGT 2 cut(s) 197, 258
HpyCH4IV ACGT 2 cut(s) 42, 229
HpyF10VI GCNNNNNNNGC 2 cut(s) 167, 242
HpyF3I CTNAG 1 cut(s) 20
HpySE526I ACGT 2 cut(s) 42, 229
Hsp92I GRCGYC 1 cut(s) 229
Hsp92II CATG 2 cut(s) 34, 236
HspAI GCGC 1 cut(s) 236
Kpn2I TCCGGA 1 cut(s) 112
Kzo9I GATC 4 cut(s) 23, 79, 172, 246
LguI GCTCTTC 1 cut(s) 153
LmnI GCTCC 1 cut(s) 243
MaeI CTAG 1 cut(s) 209
MaeII ACGT 2 cut(s) 42, 229
MalI GATC 4 cut(s) 25, 81, 174, 248
MboI GATC 4 cut(s) 23, 79, 172, 246
MboII GAAGA 1 cut(s) 140
MflI RGATCY 1 cut(s) 23
MlyI GAGTC 1 cut(s) 125
MnlI CCTC 9 cut(s) 57, 114, 117, 120, 143, 164, 189, 215, 218
MroI TCCGGA 1 cut(s) 112
MslI CAYNNNNRTG 1 cut(s) 35
MspA1I CMGCKG 1 cut(s) 77
MspI CCGG 3 cut(s) 113, 122, 182
MspR9I CCNGG 4 cut(s) 61, 167, 183, 242
MvaI CCWGG 3 cut(s) 61, 167, 242
MwoI GCNNNNNNNGC 2 cut(s) 167, 242
NciI CCSGG 1 cut(s) 183
NcoI CCATGG 1 cut(s) 30
NdeII GATC 4 cut(s) 23, 79, 172, 246
NlaIII CATG 2 cut(s) 34, 236
PciSI GCTCTTC 1 cut(s) 153
PcsI WCGNNNNNNNCGW 1 cut(s) 226
PkrI GCNGC 1 cut(s) 76
PleI GAGTC 1 cut(s) 124
PpsI GAGTC 1 cut(s) 124
Psp6I CCWGG 3 cut(s) 59, 165, 240
PspGI CCWGG 3 cut(s) 59, 165, 240
PsuI RGATCY 1 cut(s) 23
RseI CAYNNNNRTG 1 cut(s) 35
SalI GTCGAC 1 cut(s) 186
SapI GCTCTTC 1 cut(s) 153
SatI GCNGC 1 cut(s) 75
Sau3AI GATC 4 cut(s) 23, 79, 172, 246
SchI GAGTC 1 cut(s) 125
ScrFI CCNGG 4 cut(s) 61, 167, 183, 242
SetI ASST 5 cut(s) 21, 45, 72, 93, 232
SmiMI CAYNNNNRTG 1 cut(s) 35
SsiI CCGC 1 cut(s) 75
SspMI CTAG 1 cut(s) 209
StyD4I CCNGG 4 cut(s) 59, 165, 181, 240
StyI CCWWGG 2 cut(s) 30, 208
TaaI ACNGT 2 cut(s) 197, 258
TaiI ACGT 2 cut(s) 45, 232
TaqI TCGA 4 cut(s) 11, 135, 187, 220
TauI GCSGC 1 cut(s) 77
TscAI CASTG 1 cut(s) 200
TspRI CASTG 1 cut(s) 200
XagI CCTNNNNNAGG 1 cut(s) 207
XmaJI CCTAGG 1 cut(s) 208
XmiI GTMKAC 1 cut(s) 187
XspI CTAG 1 cut(s) 209
ZraI GACGTC 1 cut(s) 230
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.