Rmu_sc0018451.1_g000002

PHD-finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0018451.1
OG0017442
Physical Location & Seq
Forward (+)
6402 .. 10670
4269 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0018451.1_g000002.1.cds

Sequence Viewer

Length: 750 bp
atgaagtcaccggcgattgctctggcccaaaaccacagagccgcttcaccggacgaagacaccagtgccgagatccgtgatcatcatgaacctcgacaaccgaccttcgcttcacgatctgcagaagctaggctcttagatctaccatggttttttttcgacaaagctcagatctaccatggttgtgaacgacgctaccaagagagccaggaggaaggtcgccgccgatctgccggacctatcgccccccgggttgaccccgccgtcgtccttcccttggatatcgtcgaggaggacgtcaggcgctccaggcgatccatctactgtgaccagtgccgactggtttccgagttggatttgaatcttgagtattggtggagtaacttgaagaatgcaccggaggtgtttgtgaaaatgcctcagaaaaaaatcccggaagattccggcggtgaggatgggattgtttgtgttgaatgcaagagtacagatggagacccgtcggatccgattgtgttctgtgatgggtgtgatctgattgttcatgccacccgctatggtaatccccttgtaaatgctattccagagggggattggttctgctatcaatgctgtggttcttctgaggtttcacagtccaatgagtccttctcttgctgtctccgtcctggcaaaggtggagcaatgaagcactggatatggccggtgggtacatatcatgtgtgcgctttaggaaggctgagaggggattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009966 GO:0010646 GO:0023051 GO:0030111 GO:0048583 GO:0050789 GO:0050794 GO:0060828 GO:0065007
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PHD PHD_2 zf-HC5HC2H_2

Protein Analysis

249

Amino Acids

28.02

Weight (kDa)

5.33

Isoelectric Point (pI)

64.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 263
AatII GACGTC 1 cut(s) 300
AciI CCGC 5 cut(s) 42, 223, 261, 447, 550
AclWI GGATC 4 cut(s) 67, 309, 497, 510
AcoI YGGCCR 1 cut(s) 698
AcyI GRCGYC 1 cut(s) 297
AfaI GTAC 2 cut(s) 484, 709
AfiI CCNNNNNNNGG 2 cut(s) 277, 671
AgsI TTSAA 3 cut(s) 361, 388, 473
AjnI CCWGG 3 cut(s) 207, 308, 664
AjuI GAANNNNNNNTTGG 2 cut(s) 629, 661
AluBI AGCT 2 cut(s) 128, 167
AluI AGCT 2 cut(s) 128, 167
Alw26I GTCTC 2 cut(s) 486, 662
AlwI GGATC 4 cut(s) 67, 309, 497, 510
Ama87I CYCGRG 1 cut(s) 249
AoxI GGCC 2 cut(s) 24, 698
AspLEI GCGC 2 cut(s) 306, 725
AspS9I GGNCC 2 cut(s) 25, 236
AsuC2I CCSGG 3 cut(s) 250, 251, 434
AsuHPI GGTGA 2 cut(s) 39, 461
AvaI CYCGRG 1 cut(s) 249
AvaII GGWCC 1 cut(s) 236
BamHI GGATCC 1 cut(s) 502
BbsI GAAGAC 1 cut(s) 63
BccI CCATC 4 cut(s) 326, 449, 482, 515
BceAI ACGGC 1 cut(s) 248
BciT130I CCWGG 3 cut(s) 209, 310, 666
BclI TGATCA 1 cut(s) 79
BcnI CCSGG 3 cut(s) 250, 251, 434
BcoDI GTCTC 2 cut(s) 486, 662
BfaI CTAG 1 cut(s) 129
BfmI CTRYAG 1 cut(s) 120
BfoI RGCGCY 1 cut(s) 307
BglII AGATCT 2 cut(s) 139, 171
BisI GCNGC 2 cut(s) 42, 223
BlsI GCNGC 2 cut(s) 43, 224
Bme1390I CCNGG 6 cut(s) 209, 250, 251, 310, 434, 666
Bme18I GGWCC 1 cut(s) 236
BmeT110I CYCGRG 1 cut(s) 249
BmgT120I GGNCC 2 cut(s) 25, 236
BmiI GGNNCC 1 cut(s) 504
BmrFI CCNGG 6 cut(s) 209, 250, 251, 310, 434, 666
BpiI GAAGAC 1 cut(s) 63
BplI GAGNNNNNCTC 2 cut(s) 632, 664
BpmI CTGGAG 1 cut(s) 292
BpuEI CTTGAG 1 cut(s) 386
BpuMI CCSGG 3 cut(s) 250, 251, 434
BsaBI GATNNNNATC 1 cut(s) 360
BsaHI GRCGYC 1 cut(s) 297
BsaI GGTCTC 1 cut(s) 486
BsaJI CCNNGG 5 cut(s) 146, 178, 248, 249, 276
BsaWI WCCGGW 2 cut(s) 49, 397
Bsc4I CCNNNNNNNGG 2 cut(s) 277, 671
Bse118I RCCGGY 2 cut(s) 10, 700
Bse1I ACTGG 4 cut(s) 63, 331, 345, 695
Bse3DI GCAATG 1 cut(s) 687
Bse8I GATNNNNATC 1 cut(s) 360
BseBI CCWGG 3 cut(s) 209, 310, 666
BseDI CCNNGG 5 cut(s) 146, 178, 248, 249, 276
BseGI GGATG 1 cut(s) 460
BseJI GATNNNNATC 1 cut(s) 360
BseLI CCNNNNNNNGG 2 cut(s) 277, 671
BseMI GCAATG 1 cut(s) 687
BseMII CTCAG 4 cut(s) 182, 434, 612, 728
BseNI ACTGG 4 cut(s) 63, 331, 345, 695
BseRI GAGGAG 1 cut(s) 305
BshFI GGCC 2 cut(s) 26, 700
BsiHKCI CYCGRG 1 cut(s) 249
BsiSI CCGG 8 cut(s) 11, 50, 234, 250, 398, 434, 444, 701
BslI CCNNNNNNNGG 2 cut(s) 277, 671
BsmAI GTCTC 2 cut(s) 486, 662
BsmI GAATGC 2 cut(s) 397, 479
BsnI GGCC 2 cut(s) 26, 700
Bso31I GGTCTC 1 cut(s) 486
BsoBI CYCGRG 1 cut(s) 249
Bsp143I GATC 9 cut(s) 72, 79, 116, 139, 171, 227, 314, 502, 529
Bsp19I CCATGG 2 cut(s) 146, 178
BspACI CCGC 5 cut(s) 42, 223, 261, 447, 550
BspANI GGCC 2 cut(s) 26, 700
BspCNI CTCAG 4 cut(s) 181, 433, 613, 729
BspHI TCATGA 1 cut(s) 85
BspLI GGNNCC 1 cut(s) 504
BspMAI CTGCAG 1 cut(s) 124
BspPI GGATC 4 cut(s) 67, 309, 497, 510
BspTNI GGTCTC 1 cut(s) 486
BsrDI GCAATG 1 cut(s) 687
BsrFI RCCGGY 2 cut(s) 10, 700
BsrI ACTGG 4 cut(s) 63, 331, 345, 695
BssAI RCCGGY 2 cut(s) 10, 700
BssECI CCNNGG 5 cut(s) 146, 178, 248, 249, 276
BssMI GATC 9 cut(s) 72, 79, 116, 139, 171, 227, 314, 502, 529
BssNI GRCGYC 1 cut(s) 297
BssT1I CCWWGG 3 cut(s) 146, 178, 276
Bst2UI CCWGG 3 cut(s) 209, 310, 666
Bst4CI ACNGT 2 cut(s) 326, 633
BstACI GRCGYC 1 cut(s) 297
BstDEI CTNAG 5 cut(s) 136, 168, 420, 621, 737
BstDSI CCRYGG 2 cut(s) 146, 178
BstENI CCTNNNNNAGG 1 cut(s) 669
BstF5I GGATG 1 cut(s) 460
BstH2I RGCGCY 1 cut(s) 307
BstHHI GCGC 2 cut(s) 306, 725
BstKTI GATC 9 cut(s) 75, 82, 119, 142, 174, 230, 317, 505, 532
BstMAI GTCTC 2 cut(s) 486, 662
BstMBI GATC 9 cut(s) 72, 79, 116, 139, 171, 227, 314, 502, 529
BstMWI GCNNNNNNNGC 2 cut(s) 310, 606
BstNI CCWGG 3 cut(s) 209, 310, 666
BstSCI CCNGG 6 cut(s) 207, 248, 249, 308, 432, 664
BstSFI CTRYAG 1 cut(s) 120
BstV2I GAAGAC 1 cut(s) 63
BstX2I RGATCY 4 cut(s) 72, 139, 171, 502
BstYI RGATCY 4 cut(s) 72, 139, 171, 502
BsuRI GGCC 2 cut(s) 26, 700
BtgI CCRYGG 2 cut(s) 146, 178
BtsCI GGATG 1 cut(s) 460
BtsIMutI CAGTG 3 cut(s) 70, 338, 688
CciI TCATGA 1 cut(s) 85
CfoI GCGC 2 cut(s) 306, 725
Cfr10I RCCGGY 2 cut(s) 10, 700
Cfr13I GGNCC 2 cut(s) 25, 236
Cfr9I CCCGGG 1 cut(s) 249
CseI GACGC 1 cut(s) 201
Csp6I GTAC 2 cut(s) 483, 708
CviAII CATG 5 cut(s) 86, 147, 179, 542, 716
CviJI RGCY 8 cut(s) 26, 41, 128, 133, 167, 207, 700, 736
CviKI_1 RGCY 8 cut(s) 26, 41, 128, 133, 167, 207, 700, 736
CviQI GTAC 2 cut(s) 483, 708
DdeI CTNAG 5 cut(s) 136, 168, 420, 621, 737
DpnI GATC 9 cut(s) 74, 81, 118, 141, 173, 229, 316, 504, 531
DpnII GATC 9 cut(s) 72, 79, 116, 139, 171, 227, 314, 502, 529
DrdI GACNNNNNNGTC 1 cut(s) 263
DseDI GACNNNNNNGTC 1 cut(s) 263
EaeI YGGCCR 1 cut(s) 698
Eco130I CCWWGG 3 cut(s) 146, 178, 276
Eco31I GGTCTC 1 cut(s) 486
Eco32I GATATC 1 cut(s) 283
Eco47I GGWCC 1 cut(s) 236
Eco88I CYCGRG 1 cut(s) 249
EcoNI CCTNNNNNAGG 1 cut(s) 669
EcoRII CCWGG 3 cut(s) 207, 308, 664
EcoRV GATATC 1 cut(s) 283
EcoT14I CCWWGG 3 cut(s) 146, 178, 276
ErhI CCWWGG 3 cut(s) 146, 178, 276
FaeI CATG 5 cut(s) 89, 150, 182, 545, 719
FaiI YATR 8 cut(s) 87, 148, 180, 543, 555, 697, 712, 717
FatI CATG 5 cut(s) 85, 146, 178, 541, 715
FauI CCCGC 2 cut(s) 268, 557
FbaI TGATCA 1 cut(s) 79
Fnu4HI GCNGC 2 cut(s) 42, 223
FokI GGATG 1 cut(s) 467
Fsp4HI GCNGC 2 cut(s) 42, 223
FspBI CTAG 1 cut(s) 129
GlaI GCGC 2 cut(s) 305, 724
GluI GCNGC 2 cut(s) 42, 223
GsuI CTGGAG 1 cut(s) 292
HaeII RGCGCY 1 cut(s) 307
HaeIII GGCC 2 cut(s) 26, 700
HapII CCGG 8 cut(s) 11, 50, 234, 250, 398, 434, 444, 701
HgaI GACGC 1 cut(s) 201
HhaI GCGC 2 cut(s) 306, 725
Hin1I GRCGYC 1 cut(s) 297
Hin1II CATG 5 cut(s) 89, 150, 182, 545, 719
Hin6I GCGC 2 cut(s) 304, 723
HinP1I GCGC 2 cut(s) 304, 723
HincII GTYRAC 1 cut(s) 256
HindII GTYRAC 1 cut(s) 256
HinfI GANTC 3 cut(s) 361, 440, 641
HpaII CCGG 8 cut(s) 11, 50, 234, 250, 398, 434, 444, 701
HphI GGTGA 2 cut(s) 39, 461
Hpy166II GTNNAC 2 cut(s) 188, 256
Hpy188I TCNGA 7 cut(s) 171, 349, 423, 502, 507, 534, 622
Hpy188III TCNNGA 4 cut(s) 86, 114, 365, 581
Hpy8I GTNNAC 2 cut(s) 188, 256
Hpy99I CGWCG 4 cut(s) 195, 269, 290, 502
HpyAV CCTTC 5 cut(s) 115, 209, 281, 655, 726
HpyCH4III ACNGT 2 cut(s) 326, 633
HpyCH4IV ACGT 1 cut(s) 297
HpyCH4V TGCA 3 cut(s) 122, 395, 477
HpyF10VI GCNNNNNNNGC 2 cut(s) 310, 606
HpyF3I CTNAG 5 cut(s) 136, 168, 420, 621, 737
HpySE526I ACGT 1 cut(s) 297
Hsp92I GRCGYC 1 cut(s) 297
Hsp92II CATG 5 cut(s) 89, 150, 182, 545, 719
HspAI GCGC 2 cut(s) 304, 723
Ksp22I TGATCA 1 cut(s) 79
Kzo9I GATC 9 cut(s) 72, 79, 116, 139, 171, 227, 314, 502, 529
LmnI GCTCC 2 cut(s) 311, 677
MaeI CTAG 1 cut(s) 129
MaeII ACGT 1 cut(s) 297
MaeIII GTNAC 3 cut(s) 6, 326, 380
MalI GATC 9 cut(s) 74, 81, 118, 141, 173, 229, 316, 504, 531
MboI GATC 9 cut(s) 72, 79, 116, 139, 171, 227, 314, 502, 529
MboII GAAGA 4 cut(s) 68, 400, 449, 609
MflI RGATCY 4 cut(s) 72, 139, 171, 502
MlyI GAGTC 1 cut(s) 650
MmeI TCCRAC 2 cut(s) 333, 480
MslI CAYNNNNRTG 1 cut(s) 183
MspI CCGG 8 cut(s) 11, 50, 234, 250, 398, 434, 444, 701
MspR9I CCNGG 6 cut(s) 209, 250, 251, 310, 434, 666
Mva1269I GAATGC 2 cut(s) 397, 479
MvaI CCWGG 3 cut(s) 209, 310, 666
MwoI GCNNNNNNNGC 2 cut(s) 310, 606
NciI CCSGG 3 cut(s) 250, 251, 434
NcoI CCATGG 2 cut(s) 146, 178
NdeII GATC 9 cut(s) 72, 79, 116, 139, 171, 227, 314, 502, 529
NlaIII CATG 5 cut(s) 89, 150, 182, 545, 719
NlaIV GGNNCC 1 cut(s) 504
NmeAIII GCCGAG 1 cut(s) 94
NmuCI GTSAC 2 cut(s) 6, 326
PagI TCATGA 1 cut(s) 85
PcsI WCGNNNNNNNCGW 1 cut(s) 294
PctI GAATGC 2 cut(s) 397, 479
PfeI GAWTC 2 cut(s) 361, 440
PfoI TCCNGGA 1 cut(s) 432
PkrI GCNGC 2 cut(s) 43, 224
PleI GAGTC 1 cut(s) 649
PpsI GAGTC 1 cut(s) 649
Psp6I CCWGG 3 cut(s) 207, 308, 664
PspGI CCWGG 3 cut(s) 207, 308, 664
PspN4I GGNNCC 1 cut(s) 504
PspPI GGNCC 2 cut(s) 25, 236
PstI CTGCAG 1 cut(s) 124
PsuI RGATCY 4 cut(s) 72, 139, 171, 502
RsaI GTAC 2 cut(s) 484, 709
RsaNI GTAC 2 cut(s) 483, 708
RseI CAYNNNNRTG 1 cut(s) 183
SatI GCNGC 2 cut(s) 42, 223
Sau3AI GATC 9 cut(s) 72, 79, 116, 139, 171, 227, 314, 502, 529
Sau96I GGNCC 2 cut(s) 25, 236
SchI GAGTC 1 cut(s) 650
ScrFI CCNGG 6 cut(s) 209, 250, 251, 310, 434, 666
SfcI CTRYAG 1 cut(s) 120
SgrAI CRCCGGYG 1 cut(s) 10
SinI GGWCC 1 cut(s) 236
SmaI CCCGGG 1 cut(s) 251
SmiMI CAYNNNNRTG 1 cut(s) 183
SmlI CTYRAG 1 cut(s) 365
SmoI CTYRAG 1 cut(s) 365
SsiI CCGC 5 cut(s) 42, 223, 261, 447, 550
SspMI CTAG 1 cut(s) 129
StyD4I CCNGG 6 cut(s) 207, 248, 249, 308, 432, 664
StyI CCWWGG 3 cut(s) 146, 178, 276
TaaI ACNGT 2 cut(s) 326, 633
TaiI ACGT 1 cut(s) 300
TaqI TCGA 3 cut(s) 94, 159, 288
TatI WGTACW 1 cut(s) 482
TauI GCSGC 2 cut(s) 44, 225
TfiI GAWTC 2 cut(s) 361, 440
TscAI CASTG 3 cut(s) 70, 338, 695
TseFI GTSAC 2 cut(s) 6, 326
Tsp45I GTSAC 2 cut(s) 6, 326
TspDTI ATGAA 4 cut(s) 17, 102, 530, 698
TspGWI ACGGA 2 cut(s) 65, 650
TspMI CCCGGG 1 cut(s) 249
TspRI CASTG 3 cut(s) 70, 338, 695
VpaK11BI GGWCC 1 cut(s) 236
XagI CCTNNNNNAGG 1 cut(s) 669
XcmI CCANNNNNNNNNTGG 1 cut(s) 588
XmaI CCCGGG 1 cut(s) 249
XspI CTAG 1 cut(s) 129
ZraI GACGTC 1 cut(s) 298
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.