Rh5CG128300

Phd finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0017442
Physical Location & Seq
Forward (+)
10705045 .. 10705275
231 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG128300.1

Sequence Viewer

Length: 231 bp
ATGTTTGTGAACGAGGCTACCAAGAGAGCCAGGGGGAAGGTCGCCGCCGATCTGCCCGACCTGTTCACCTTCCCTCCTCCTCCGGAGTCGCCGGAAGCCTTCCTCGGCTTCCTCGCTCTTCCCCTCCCTGCTGACCTGGCAGATCACCCTCCGGGTCGACCCCACTGTCATCCTTCCCTTGGATATCGTCGAGGAGGACGTCATGCGCTCCAGGCGATCCATCTACTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PHD

Protein Analysis

76

Amino Acids

8.27

Weight (kDa)

8.03

Isoelectric Point (pI)

65.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 165
AatII GACGTC 1 cut(s) 202
AccI GTMKAC 1 cut(s) 157
AccIII TCCGGA 1 cut(s) 82
AciI CCGC 1 cut(s) 45
AclWI GGATC 1 cut(s) 211
AcyI GRCGYC 1 cut(s) 199
AfiI CCNNNNNNNGG 1 cut(s) 179
AjnI CCWGG 3 cut(s) 29, 135, 210
AlwI GGATC 1 cut(s) 211
Aor13HI TCCGGA 1 cut(s) 82
AspLEI GCGC 1 cut(s) 208
AsuC2I CCSGG 1 cut(s) 153
AsuHPI GGTGA 2 cut(s) 58, 137
BccI CCATC 1 cut(s) 228
BciT130I CCWGG 3 cut(s) 31, 137, 212
BcnI CCSGG 1 cut(s) 153
BisI GCNGC 1 cut(s) 45
BlsI GCNGC 1 cut(s) 46
Bme1390I CCNGG 4 cut(s) 31, 137, 153, 212
BmrFI CCNGG 4 cut(s) 31, 137, 153, 212
BpmI CTGGAG 1 cut(s) 194
BpuMI CCSGG 1 cut(s) 153
BsaHI GRCGYC 1 cut(s) 199
BsaJI CCNNGG 3 cut(s) 30, 103, 178
BsaWI WCCGGW 1 cut(s) 82
BsaXI ACNNNNNCTCC 2 cut(s) 58, 88
Bsc4I CCNNNNNNNGG 1 cut(s) 179
BseAI TCCGGA 1 cut(s) 82
BseBI CCWGG 3 cut(s) 31, 137, 212
BseDI CCNNGG 3 cut(s) 30, 103, 178
BseGI GGATG 1 cut(s) 169
BseLI CCNNNNNNNGG 1 cut(s) 179
BseRI GAGGAG 3 cut(s) 66, 69, 207
BsiSI CCGG 3 cut(s) 83, 92, 152
BslI CCNNNNNNNGG 1 cut(s) 179
Bsp13I TCCGGA 1 cut(s) 82
Bsp143I GATC 3 cut(s) 49, 142, 216
BspACI CCGC 1 cut(s) 45
BspEI TCCGGA 1 cut(s) 82
BspPI GGATC 1 cut(s) 211
BspQI GCTCTTC 1 cut(s) 123
BssECI CCNNGG 3 cut(s) 30, 103, 178
BssMI GATC 3 cut(s) 49, 142, 216
BssNI GRCGYC 1 cut(s) 199
BssT1I CCWWGG 1 cut(s) 178
Bst2UI CCWGG 3 cut(s) 31, 137, 212
Bst4CI ACNGT 2 cut(s) 167, 228
Bst6I CTCTTC 1 cut(s) 123
BstACI GRCGYC 1 cut(s) 199
BstF5I GGATG 1 cut(s) 169
BstHHI GCGC 1 cut(s) 208
BstKTI GATC 3 cut(s) 52, 145, 219
BstMBI GATC 3 cut(s) 49, 142, 216
BstMWI GCNNNNNNNGC 2 cut(s) 137, 212
BstNI CCWGG 3 cut(s) 31, 137, 212
BstSCI CCNGG 4 cut(s) 29, 135, 151, 210
BtsCI GGATG 1 cut(s) 169
BtsIMutI CAGTG 1 cut(s) 163
CfoI GCGC 1 cut(s) 208
CviAII CATG 1 cut(s) 203
CviJI RGCY 4 cut(s) 17, 29, 98, 108
CviKI_1 RGCY 4 cut(s) 17, 29, 98, 108
DpnI GATC 3 cut(s) 51, 144, 218
DpnII GATC 3 cut(s) 49, 142, 216
DrdI GACNNNNNNGTC 1 cut(s) 165
DseDI GACNNNNNNGTC 1 cut(s) 165
Eam1104I CTCTTC 1 cut(s) 123
EarI CTCTTC 1 cut(s) 123
Eco130I CCWWGG 1 cut(s) 178
Eco32I GATATC 1 cut(s) 185
EcoRII CCWGG 3 cut(s) 29, 135, 210
EcoRV GATATC 1 cut(s) 185
EcoT14I CCWWGG 1 cut(s) 178
ErhI CCWWGG 1 cut(s) 178
FaeI CATG 1 cut(s) 206
FaiI YATR 1 cut(s) 204
FatI CATG 1 cut(s) 202
FblI GTMKAC 1 cut(s) 157
Fnu4HI GCNGC 1 cut(s) 45
FokI GGATG 1 cut(s) 156
Fsp4HI GCNGC 1 cut(s) 45
GlaI GCGC 1 cut(s) 207
GluI GCNGC 1 cut(s) 45
GsuI CTGGAG 1 cut(s) 194
HapII CCGG 3 cut(s) 83, 92, 152
HhaI GCGC 1 cut(s) 208
Hin1I GRCGYC 1 cut(s) 199
Hin1II CATG 1 cut(s) 206
Hin6I GCGC 1 cut(s) 206
HinP1I GCGC 1 cut(s) 206
HincII GTYRAC 1 cut(s) 158
HindII GTYRAC 1 cut(s) 158
HinfI GANTC 1 cut(s) 86
HpaII CCGG 3 cut(s) 83, 92, 152
HphI GGTGA 2 cut(s) 58, 137
Hpy166II GTNNAC 3 cut(s) 10, 66, 158
Hpy188III TCNNGA 1 cut(s) 83
Hpy8I GTNNAC 3 cut(s) 10, 66, 158
Hpy99I CGWCG 1 cut(s) 192
HpyAV CCTTC 4 cut(s) 31, 79, 109, 183
HpyCH4III ACNGT 2 cut(s) 167, 228
HpyCH4IV ACGT 1 cut(s) 199
HpyF10VI GCNNNNNNNGC 2 cut(s) 137, 212
HpySE526I ACGT 1 cut(s) 199
Hsp92I GRCGYC 1 cut(s) 199
Hsp92II CATG 1 cut(s) 206
HspAI GCGC 1 cut(s) 206
Kpn2I TCCGGA 1 cut(s) 82
Kzo9I GATC 3 cut(s) 49, 142, 216
LguI GCTCTTC 1 cut(s) 123
LmnI GCTCC 1 cut(s) 213
MaeII ACGT 1 cut(s) 199
MalI GATC 3 cut(s) 51, 144, 218
MboI GATC 3 cut(s) 49, 142, 216
MboII GAAGA 1 cut(s) 110
MlyI GAGTC 1 cut(s) 95
MroI TCCGGA 1 cut(s) 82
MspI CCGG 3 cut(s) 83, 92, 152
MspR9I CCNGG 4 cut(s) 31, 137, 153, 212
MvaI CCWGG 3 cut(s) 31, 137, 212
MwoI GCNNNNNNNGC 2 cut(s) 137, 212
NciI CCSGG 1 cut(s) 153
NdeII GATC 3 cut(s) 49, 142, 216
NlaIII CATG 1 cut(s) 206
NmeAIII GCCGAG 1 cut(s) 84
PciSI GCTCTTC 1 cut(s) 123
PcsI WCGNNNNNNNCGW 1 cut(s) 196
PkrI GCNGC 1 cut(s) 46
PleI GAGTC 1 cut(s) 94
PpsI GAGTC 1 cut(s) 94
Psp6I CCWGG 3 cut(s) 29, 135, 210
PspGI CCWGG 3 cut(s) 29, 135, 210
SalI GTCGAC 1 cut(s) 156
SapI GCTCTTC 1 cut(s) 123
SatI GCNGC 1 cut(s) 45
Sau3AI GATC 3 cut(s) 49, 142, 216
SchI GAGTC 1 cut(s) 95
ScrFI CCNGG 4 cut(s) 31, 137, 153, 212
SetI ASST 5 cut(s) 42, 63, 71, 138, 202
SsiI CCGC 1 cut(s) 45
StyD4I CCNGG 4 cut(s) 29, 135, 151, 210
StyI CCWWGG 1 cut(s) 178
TaaI ACNGT 2 cut(s) 167, 228
TaiI ACGT 1 cut(s) 202
TaqI TCGA 2 cut(s) 157, 190
TauI GCSGC 1 cut(s) 47
TscAI CASTG 1 cut(s) 170
TspRI CASTG 1 cut(s) 170
XmiI GTMKAC 1 cut(s) 157
ZraI GACGTC 1 cut(s) 200
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.