Rh7CG498000

Phd finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0017442
Physical Location & Seq
Forward (+)
67139175 .. 67139527
353 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG498000.1

Sequence Viewer

Length: 231 bp
ATGGTTTTTTCGACAAAGCTCAGATCTACCATGGTTGTGAACGAGGCTACCAAGAGAGCCAGGAGGAAGGTCGCCGCCGATCTGCCCGACCTGTTCACATTCCCTCCTCCTCCGGAGTCACCGGAAGCCTTCCTCGGCTTCCTCGCTCTTCCCCTCCCTGCTGACTTGGCAGATCGCCCTCTGGGTCGACCCCGCCGTCGTCCTTCGCTCCAGGCGATCCATCTACTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PHD

Protein Analysis

76

Amino Acids

8.48

Weight (kDa)

11.18

Isoelectric Point (pI)

87.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 195
AccI GTMKAC 1 cut(s) 187
AccIII TCCGGA 1 cut(s) 112
AciI CCGC 2 cut(s) 75, 193
AclWI GGATC 1 cut(s) 211
AjnI CCWGG 2 cut(s) 59, 210
AluBI AGCT 1 cut(s) 19
AluI AGCT 1 cut(s) 19
AlwI GGATC 1 cut(s) 211
Aor13HI TCCGGA 1 cut(s) 112
AsuHPI GGTGA 1 cut(s) 111
BccI CCATC 1 cut(s) 228
BceAI ACGGC 1 cut(s) 180
BciT130I CCWGG 2 cut(s) 61, 212
BglII AGATCT 1 cut(s) 23
BisI GCNGC 1 cut(s) 75
BlsI GCNGC 1 cut(s) 76
Bme1390I CCNGG 2 cut(s) 61, 212
BmrFI CCNGG 2 cut(s) 61, 212
BpmI CTGGAG 1 cut(s) 194
BsaJI CCNNGG 2 cut(s) 30, 133
BsaWI WCCGGW 2 cut(s) 112, 121
BsaXI ACNNNNNCTCC 2 cut(s) 88, 118
BseAI TCCGGA 1 cut(s) 112
BseBI CCWGG 2 cut(s) 61, 212
BseDI CCNNGG 2 cut(s) 30, 133
BseMII CTCAG 1 cut(s) 34
BseRI GAGGAG 2 cut(s) 96, 99
BsiSI CCGG 2 cut(s) 113, 122
Bsp13I TCCGGA 1 cut(s) 112
Bsp143I GATC 4 cut(s) 23, 79, 172, 216
Bsp19I CCATGG 1 cut(s) 30
BspACI CCGC 2 cut(s) 75, 193
BspCNI CTCAG 1 cut(s) 33
BspEI TCCGGA 1 cut(s) 112
BspPI GGATC 1 cut(s) 211
BspQI GCTCTTC 1 cut(s) 153
BssECI CCNNGG 2 cut(s) 30, 133
BssMI GATC 4 cut(s) 23, 79, 172, 216
BssT1I CCWWGG 1 cut(s) 30
Bst2UI CCWGG 2 cut(s) 61, 212
Bst4CI ACNGT 1 cut(s) 228
Bst6I CTCTTC 1 cut(s) 153
BstDEI CTNAG 1 cut(s) 20
BstDSI CCRYGG 1 cut(s) 30
BstKTI GATC 4 cut(s) 26, 82, 175, 219
BstMBI GATC 4 cut(s) 23, 79, 172, 216
BstMWI GCNNNNNNNGC 1 cut(s) 167
BstNI CCWGG 2 cut(s) 61, 212
BstSCI CCNGG 2 cut(s) 59, 210
BstX2I RGATCY 1 cut(s) 23
BstYI RGATCY 1 cut(s) 23
BtgI CCRYGG 1 cut(s) 30
CviAII CATG 1 cut(s) 31
CviJI RGCY 5 cut(s) 19, 47, 59, 128, 138
CviKI_1 RGCY 5 cut(s) 19, 47, 59, 128, 138
DdeI CTNAG 1 cut(s) 20
DpnI GATC 4 cut(s) 25, 81, 174, 218
DpnII GATC 4 cut(s) 23, 79, 172, 216
DrdI GACNNNNNNGTC 1 cut(s) 195
DseDI GACNNNNNNGTC 1 cut(s) 195
Eam1104I CTCTTC 1 cut(s) 153
EarI CTCTTC 1 cut(s) 153
Eco130I CCWWGG 1 cut(s) 30
EcoRII CCWGG 2 cut(s) 59, 210
EcoT14I CCWWGG 1 cut(s) 30
ErhI CCWWGG 1 cut(s) 30
FaeI CATG 1 cut(s) 34
FaiI YATR 1 cut(s) 32
FatI CATG 1 cut(s) 30
FauI CCCGC 1 cut(s) 200
FblI GTMKAC 1 cut(s) 187
Fnu4HI GCNGC 1 cut(s) 75
Fsp4HI GCNGC 1 cut(s) 75
GluI GCNGC 1 cut(s) 75
GsuI CTGGAG 1 cut(s) 194
HapII CCGG 2 cut(s) 113, 122
Hin1II CATG 1 cut(s) 34
HincII GTYRAC 1 cut(s) 188
HindII GTYRAC 1 cut(s) 188
HinfI GANTC 1 cut(s) 116
HpaII CCGG 2 cut(s) 113, 122
HphI GGTGA 1 cut(s) 111
Hpy166II GTNNAC 3 cut(s) 40, 96, 188
Hpy188I TCNGA 1 cut(s) 23
Hpy188III TCNNGA 1 cut(s) 113
Hpy8I GTNNAC 3 cut(s) 40, 96, 188
Hpy99I CGWCG 1 cut(s) 201
HpyAV CCTTC 3 cut(s) 61, 139, 213
HpyCH4III ACNGT 1 cut(s) 228
HpyF10VI GCNNNNNNNGC 1 cut(s) 167
HpyF3I CTNAG 1 cut(s) 20
Hsp92II CATG 1 cut(s) 34
Kpn2I TCCGGA 1 cut(s) 112
Kzo9I GATC 4 cut(s) 23, 79, 172, 216
LguI GCTCTTC 1 cut(s) 153
LmnI GCTCC 1 cut(s) 213
LpnPI CCDG 9 cut(s) 46, 73, 104, 126, 135, 167, 171, 197, 224
MaeIII GTNAC 1 cut(s) 117
MalI GATC 4 cut(s) 25, 81, 174, 218
MboI GATC 4 cut(s) 23, 79, 172, 216
MboII GAAGA 1 cut(s) 140
MflI RGATCY 1 cut(s) 23
MlyI GAGTC 1 cut(s) 125
MnlI CCTC 9 cut(s) 37, 57, 114, 117, 120, 143, 152, 164, 189
MroI TCCGGA 1 cut(s) 112
MslI CAYNNNNRTG 1 cut(s) 35
MspI CCGG 2 cut(s) 113, 122
MspR9I CCNGG 2 cut(s) 61, 212
MvaI CCWGG 2 cut(s) 61, 212
MwoI GCNNNNNNNGC 1 cut(s) 167
NcoI CCATGG 1 cut(s) 30
NdeII GATC 4 cut(s) 23, 79, 172, 216
NlaIII CATG 1 cut(s) 34
NmeAIII GCCGAG 1 cut(s) 114
NmuCI GTSAC 1 cut(s) 117
PciSI GCTCTTC 1 cut(s) 153
PcsI WCGNNNNNNNCGW 2 cut(s) 193, 212
PkrI GCNGC 1 cut(s) 76
PleI GAGTC 1 cut(s) 124
PpsI GAGTC 1 cut(s) 124
Psp6I CCWGG 2 cut(s) 59, 210
PspGI CCWGG 2 cut(s) 59, 210
PsuI RGATCY 1 cut(s) 23
RseI CAYNNNNRTG 1 cut(s) 35
SalI GTCGAC 1 cut(s) 186
SapI GCTCTTC 1 cut(s) 153
SatI GCNGC 1 cut(s) 75
Sau3AI GATC 4 cut(s) 23, 79, 172, 216
SchI GAGTC 1 cut(s) 125
ScrFI CCNGG 2 cut(s) 61, 212
SetI ASST 3 cut(s) 21, 72, 93
SmiMI CAYNNNNRTG 1 cut(s) 35
SsiI CCGC 2 cut(s) 75, 193
StyD4I CCNGG 2 cut(s) 59, 210
StyI CCWWGG 1 cut(s) 30
TaaI ACNGT 1 cut(s) 228
TaqI TCGA 2 cut(s) 11, 187
TauI GCSGC 1 cut(s) 77
TseFI GTSAC 1 cut(s) 117
Tsp45I GTSAC 1 cut(s) 117
XmiI GTMKAC 1 cut(s) 187
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.