Rh5DG207100

Phd finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0017442
Physical Location & Seq
Reverse (-)
22899737 .. 22900072
336 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG207100.1

Sequence Viewer

Length: 336 bp
ATGAAGTCACCGGTGATTGCTCTGGCCCAAAACCACAGAGCCGCTTCACCGGACGAAGACACCAGTGCCGAGATCCGTGATCATTATGAACCTCGACAACCGACCTTCGCTTCACGATCTGCAGAAGCTAGGCTCTTAGATCTACCATGGTTTTTTTCGACAAAGCTCAGATCTACCATGGTTGTGAACGAGGCTACCAAGAGAGCCAGGAGGAAGGTCGCCGCCGATATGCCTGACTTGTTCACCTTCCCTCCTCCGCCGGAGTCGCCGGAAGCCTTCCTCGGTTTCCTCACTCTTCCCCTCCCTGCTAACCTGGCAGATCGCCCCCTGGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PHD

Protein Analysis

111

Amino Acids

12.37

Weight (kDa)

6.73

Isoelectric Point (pI)

74.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 42, 222, 257
AclWI GGATC 1 cut(s) 67
AgeI ACCGGT 1 cut(s) 10
AjnI CCWGG 3 cut(s) 206, 312, 327
AluBI AGCT 2 cut(s) 128, 166
AluI AGCT 2 cut(s) 128, 166
AlwI GGATC 1 cut(s) 67
AoxI GGCC 1 cut(s) 24
AsiGI ACCGGT 1 cut(s) 10
AspS9I GGNCC 1 cut(s) 25
AsuHPI GGTGA 3 cut(s) 25, 39, 235
BbsI GAAGAC 1 cut(s) 63
BciT130I CCWGG 3 cut(s) 208, 314, 329
BclI TGATCA 1 cut(s) 79
BfaI CTAG 1 cut(s) 129
BfmI CTRYAG 1 cut(s) 120
BglII AGATCT 2 cut(s) 139, 170
BisI GCNGC 2 cut(s) 42, 222
BlsI GCNGC 2 cut(s) 43, 223
Bme1390I CCNGG 3 cut(s) 208, 314, 329
BmgT120I GGNCC 1 cut(s) 25
BmrFI CCNGG 3 cut(s) 208, 314, 329
BpiI GAAGAC 1 cut(s) 63
BsaJI CCNNGG 5 cut(s) 146, 177, 280, 327, 328
BsaWI WCCGGW 2 cut(s) 10, 49
BsaXI ACNNNNNCTCC 2 cut(s) 235, 265
Bse118I RCCGGY 1 cut(s) 10
Bse1I ACTGG 1 cut(s) 63
BseBI CCWGG 3 cut(s) 208, 314, 329
BseDI CCNNGG 5 cut(s) 146, 177, 280, 327, 328
BseMII CTCAG 1 cut(s) 181
BseNI ACTGG 1 cut(s) 63
BseRI GAGGAG 1 cut(s) 243
BshFI GGCC 1 cut(s) 26
BshTI ACCGGT 1 cut(s) 10
BsiSI CCGG 4 cut(s) 11, 50, 260, 269
BsnI GGCC 1 cut(s) 26
Bsp143I GATC 6 cut(s) 72, 79, 116, 139, 170, 319
Bsp19I CCATGG 2 cut(s) 146, 177
BspACI CCGC 3 cut(s) 42, 222, 257
BspANI GGCC 1 cut(s) 26
BspCNI CTCAG 1 cut(s) 180
BspMAI CTGCAG 1 cut(s) 124
BspPI GGATC 1 cut(s) 67
BsrFI RCCGGY 1 cut(s) 10
BsrI ACTGG 1 cut(s) 63
BssAI RCCGGY 1 cut(s) 10
BssECI CCNNGG 5 cut(s) 146, 177, 280, 327, 328
BssMI GATC 6 cut(s) 72, 79, 116, 139, 170, 319
BssT1I CCWWGG 2 cut(s) 146, 177
Bst2UI CCWGG 3 cut(s) 208, 314, 329
Bst6I CTCTTC 1 cut(s) 300
BstDEI CTNAG 2 cut(s) 136, 167
BstDSI CCRYGG 2 cut(s) 146, 177
BstKTI GATC 6 cut(s) 75, 82, 119, 142, 173, 322
BstMBI GATC 6 cut(s) 72, 79, 116, 139, 170, 319
BstMWI GCNNNNNNNGC 2 cut(s) 265, 314
BstNI CCWGG 3 cut(s) 208, 314, 329
BstSCI CCNGG 3 cut(s) 206, 312, 327
BstSFI CTRYAG 1 cut(s) 120
BstV2I GAAGAC 1 cut(s) 63
BstX2I RGATCY 3 cut(s) 72, 139, 170
BstYI RGATCY 3 cut(s) 72, 139, 170
BsuRI GGCC 1 cut(s) 26
BtgI CCRYGG 2 cut(s) 146, 177
BtsIMutI CAGTG 1 cut(s) 70
Cfr10I RCCGGY 1 cut(s) 10
Cfr13I GGNCC 1 cut(s) 25
CspAI ACCGGT 1 cut(s) 10
CviAII CATG 2 cut(s) 147, 178
CviJI RGCY 8 cut(s) 26, 41, 128, 133, 166, 194, 206, 275
CviKI_1 RGCY 8 cut(s) 26, 41, 128, 133, 166, 194, 206, 275
DdeI CTNAG 2 cut(s) 136, 167
DpnI GATC 6 cut(s) 74, 81, 118, 141, 172, 321
DpnII GATC 6 cut(s) 72, 79, 116, 139, 170, 319
Eam1104I CTCTTC 1 cut(s) 300
EarI CTCTTC 1 cut(s) 300
EciI GGCGGA 1 cut(s) 246
Eco130I CCWWGG 2 cut(s) 146, 177
EcoRII CCWGG 3 cut(s) 206, 312, 327
EcoT14I CCWWGG 2 cut(s) 146, 177
ErhI CCWWGG 2 cut(s) 146, 177
FaeI CATG 2 cut(s) 150, 181
FaiI YATR 4 cut(s) 87, 148, 179, 230
FatI CATG 2 cut(s) 146, 177
FbaI TGATCA 1 cut(s) 79
Fnu4HI GCNGC 2 cut(s) 42, 222
Fsp4HI GCNGC 2 cut(s) 42, 222
FspBI CTAG 1 cut(s) 129
GluI GCNGC 2 cut(s) 42, 222
HaeIII GGCC 1 cut(s) 26
HapII CCGG 4 cut(s) 11, 50, 260, 269
Hin1II CATG 2 cut(s) 150, 181
HinfI GANTC 1 cut(s) 263
HpaII CCGG 4 cut(s) 11, 50, 260, 269
HphI GGTGA 3 cut(s) 25, 39, 235
Hpy166II GTNNAC 2 cut(s) 187, 243
Hpy188I TCNGA 1 cut(s) 170
Hpy188III TCNNGA 1 cut(s) 114
Hpy8I GTNNAC 2 cut(s) 187, 243
HpyAV CCTTC 4 cut(s) 115, 208, 256, 286
HpyCH4V TGCA 1 cut(s) 122
HpyF10VI GCNNNNNNNGC 2 cut(s) 265, 314
HpyF3I CTNAG 2 cut(s) 136, 167
Hsp92II CATG 2 cut(s) 150, 181
Ksp22I TGATCA 1 cut(s) 79
Kzo9I GATC 6 cut(s) 72, 79, 116, 139, 170, 319
MaeI CTAG 1 cut(s) 129
MaeIII GTNAC 1 cut(s) 6
MalI GATC 6 cut(s) 74, 81, 118, 141, 172, 321
MboI GATC 6 cut(s) 72, 79, 116, 139, 170, 319
MboII GAAGA 2 cut(s) 68, 287
MflI RGATCY 3 cut(s) 72, 139, 170
MlyI GAGTC 1 cut(s) 272
MnlI CCTC 8 cut(s) 102, 184, 204, 261, 264, 290, 299, 311
MslI CAYNNNNRTG 1 cut(s) 182
MspI CCGG 4 cut(s) 11, 50, 260, 269
MspR9I CCNGG 3 cut(s) 208, 314, 329
MvaI CCWGG 3 cut(s) 208, 314, 329
MwoI GCNNNNNNNGC 2 cut(s) 265, 314
NcoI CCATGG 2 cut(s) 146, 177
NdeII GATC 6 cut(s) 72, 79, 116, 139, 170, 319
NlaIII CATG 2 cut(s) 150, 181
NmeAIII GCCGAG 1 cut(s) 94
NmuCI GTSAC 1 cut(s) 6
PasI CCCWGGG 1 cut(s) 328
PinAI ACCGGT 1 cut(s) 10
PkrI GCNGC 2 cut(s) 43, 223
PleI GAGTC 1 cut(s) 271
PpsI GAGTC 1 cut(s) 271
Psp6I CCWGG 3 cut(s) 206, 312, 327
PspGI CCWGG 3 cut(s) 206, 312, 327
PspPI GGNCC 1 cut(s) 25
PstI CTGCAG 1 cut(s) 124
PsuI RGATCY 3 cut(s) 72, 139, 170
RseI CAYNNNNRTG 1 cut(s) 182
SatI GCNGC 2 cut(s) 42, 222
Sau3AI GATC 6 cut(s) 72, 79, 116, 139, 170, 319
Sau96I GGNCC 1 cut(s) 25
SchI GAGTC 1 cut(s) 272
ScrFI CCNGG 3 cut(s) 208, 314, 329
SetI ASST 7 cut(s) 94, 107, 130, 168, 219, 248, 315
SfcI CTRYAG 1 cut(s) 120
SgrAI CRCCGGYG 1 cut(s) 10
SmiMI CAYNNNNRTG 1 cut(s) 182
SsiI CCGC 3 cut(s) 42, 222, 257
SspMI CTAG 1 cut(s) 129
StyD4I CCNGG 3 cut(s) 206, 312, 327
StyI CCWWGG 2 cut(s) 146, 177
TaqI TCGA 2 cut(s) 94, 158
TauI GCSGC 2 cut(s) 44, 224
TscAI CASTG 1 cut(s) 70
TseFI GTSAC 1 cut(s) 6
Tsp45I GTSAC 1 cut(s) 6
TspDTI ATGAA 2 cut(s) 17, 102
TspGWI ACGGA 1 cut(s) 65
TspRI CASTG 1 cut(s) 70
XspI CTAG 1 cut(s) 129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.