RLG00000017780

Phd finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0017442
Physical Location & Seq
Reverse (-)
21130939 .. 21132910
1972 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000017780

Sequence Viewer

Length: 477 bp
ATGAAGTCACCGGCGATTGCTCTGGCCCAAAACCACAGAGCCGCTTCACCGGACGAAGACACCAGCGCCGAGATCCGTGATCATCATGAAACTCGACAATCGACCTTCGCTTCACGATCTGCAGAAGCTAAGCTCTCAGATCTACCATGGTTTTTTTCGACAAAGCTCAGATCTACCATGGTTGTGAACGAGGCTACCCAGAGAGCTAGGAGGAAGTCGCCGCCGATCTGCCCGACCTGTTCACCTTCCCTCCTCCGCCAGAGTCTCCGAAAGCCTTCCTCGGCTTCCTCGCTCTTCCCTTCCCTGCTAACCTGGCAGATCGCCCTCCGGGTCGACCCCGCTGTCGTCCTTCCCTTGGATATCATCGAGGAGGACGTCAGGCGCTCCAGGCGATCCATCTACTGTGACCAATGCCGAGTCGTGGTTTTTGCATCTTCCTTTGGGATGTATGCCGGACTGCTGTCAATTAAGCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PHD

Protein Analysis

159

Amino Acids

17.66

Weight (kDa)

9.69

Isoelectric Point (pI)

82.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 341
AatII GACGTC 1 cut(s) 378
AccI GTMKAC 1 cut(s) 333
AciI CCGC 4 cut(s) 42, 221, 256, 339
AclWI GGATC 2 cut(s) 67, 387
AcyI GRCGYC 1 cut(s) 375
AfiI CCNNNNNNNGG 2 cut(s) 355, 421
AjnI CCWGG 2 cut(s) 311, 386
AluBI AGCT 4 cut(s) 128, 133, 166, 206
AluI AGCT 4 cut(s) 128, 133, 166, 206
Alw26I GTCTC 1 cut(s) 269
AlwI GGATC 2 cut(s) 67, 387
AoxI GGCC 1 cut(s) 24
Asp700I GAANNNNTTC 1 cut(s) 274
AspLEI GCGC 2 cut(s) 68, 384
AspS9I GGNCC 1 cut(s) 25
AsuC2I CCSGG 1 cut(s) 329
AsuHPI GGTGA 2 cut(s) 39, 234
BbsI GAAGAC 1 cut(s) 63
BccI CCATC 1 cut(s) 404
BciT130I CCWGG 2 cut(s) 313, 388
BclI TGATCA 1 cut(s) 79
BcnI CCSGG 1 cut(s) 329
BcoDI GTCTC 1 cut(s) 269
BfaI CTAG 1 cut(s) 207
BfmI CTRYAG 1 cut(s) 120
BfoI RGCGCY 2 cut(s) 69, 385
BglII AGATCT 2 cut(s) 139, 170
BisI GCNGC 2 cut(s) 42, 221
BlpI GCTNAGC 1 cut(s) 129
BlsI GCNGC 2 cut(s) 43, 222
Bme1390I CCNGG 3 cut(s) 313, 329, 388
BmgT120I GGNCC 1 cut(s) 25
BmrFI CCNGG 3 cut(s) 313, 329, 388
BmsI GCATC 1 cut(s) 440
BoxI GACNNNNGTC 1 cut(s) 460
BpiI GAAGAC 1 cut(s) 63
BpmI CTGGAG 1 cut(s) 370
Bpu1102I GCTNAGC 1 cut(s) 129
BpuMI CCSGG 1 cut(s) 329
BsaHI GRCGYC 1 cut(s) 375
BsaJI CCNNGG 4 cut(s) 146, 177, 279, 354
BsaWI WCCGGW 1 cut(s) 49
BsaXI ACNNNNNCTCC 2 cut(s) 234, 264
Bsc4I CCNNNNNNNGG 2 cut(s) 355, 421
Bse118I RCCGGY 1 cut(s) 10
BseBI CCWGG 2 cut(s) 313, 388
BseDI CCNNGG 4 cut(s) 146, 177, 279, 354
BseGI GGATG 1 cut(s) 450
BseLI CCNNNNNNNGG 2 cut(s) 355, 421
BseMII CTCAG 2 cut(s) 150, 181
BseRI GAGGAG 2 cut(s) 242, 383
BshFI GGCC 1 cut(s) 26
BsiSI CCGG 4 cut(s) 11, 50, 328, 453
BslI CCNNNNNNNGG 2 cut(s) 355, 421
BsmAI GTCTC 1 cut(s) 269
BsnI GGCC 1 cut(s) 26
Bsp143I GATC 8 cut(s) 72, 79, 116, 139, 170, 225, 318, 392
Bsp1720I GCTNAGC 1 cut(s) 129
Bsp19I CCATGG 2 cut(s) 146, 177
BspACI CCGC 4 cut(s) 42, 221, 256, 339
BspANI GGCC 1 cut(s) 26
BspCNI CTCAG 2 cut(s) 149, 180
BspHI TCATGA 1 cut(s) 85
BspMAI CTGCAG 1 cut(s) 124
BspPI GGATC 2 cut(s) 67, 387
BspQI GCTCTTC 1 cut(s) 299
BsrFI RCCGGY 1 cut(s) 10
BssAI RCCGGY 1 cut(s) 10
BssECI CCNNGG 4 cut(s) 146, 177, 279, 354
BssMI GATC 8 cut(s) 72, 79, 116, 139, 170, 225, 318, 392
BssNI GRCGYC 1 cut(s) 375
BssT1I CCWWGG 3 cut(s) 146, 177, 354
Bst2UI CCWGG 2 cut(s) 313, 388
Bst4CI ACNGT 1 cut(s) 404
Bst6I CTCTTC 1 cut(s) 299
BstACI GRCGYC 1 cut(s) 375
BstDEI CTNAG 3 cut(s) 129, 136, 167
BstDSI CCRYGG 2 cut(s) 146, 177
BstF5I GGATG 1 cut(s) 450
BstH2I RGCGCY 2 cut(s) 69, 385
BstHHI GCGC 2 cut(s) 68, 384
BstKTI GATC 8 cut(s) 75, 82, 119, 142, 173, 228, 321, 395
BstMAI GTCTC 1 cut(s) 269
BstMBI GATC 8 cut(s) 72, 79, 116, 139, 170, 225, 318, 392
BstMWI GCNNNNNNNGC 2 cut(s) 313, 388
BstNI CCWGG 2 cut(s) 313, 388
BstPAI GACNNNNGTC 1 cut(s) 460
BstSCI CCNGG 3 cut(s) 311, 327, 386
BstSFI CTRYAG 1 cut(s) 120
BstV2I GAAGAC 1 cut(s) 63
BstX2I RGATCY 3 cut(s) 72, 139, 170
BstYI RGATCY 3 cut(s) 72, 139, 170
BsuRI GGCC 1 cut(s) 26
BtgI CCRYGG 2 cut(s) 146, 177
BtsCI GGATG 1 cut(s) 450
CciI TCATGA 1 cut(s) 85
CfoI GCGC 2 cut(s) 68, 384
Cfr10I RCCGGY 1 cut(s) 10
Cfr13I GGNCC 1 cut(s) 25
CviAII CATG 3 cut(s) 86, 147, 178
CviJI RGCY 9 cut(s) 26, 41, 128, 133, 166, 194, 206, 274, 284
CviKI_1 RGCY 9 cut(s) 26, 41, 128, 133, 166, 194, 206, 274, 284
DdeI CTNAG 3 cut(s) 129, 136, 167
DpnI GATC 8 cut(s) 74, 81, 118, 141, 172, 227, 320, 394
DpnII GATC 8 cut(s) 72, 79, 116, 139, 170, 225, 318, 392
DrdI GACNNNNNNGTC 1 cut(s) 341
DseDI GACNNNNNNGTC 1 cut(s) 341
Eam1104I CTCTTC 1 cut(s) 299
EarI CTCTTC 1 cut(s) 299
EciI GGCGGA 1 cut(s) 245
Eco130I CCWWGG 3 cut(s) 146, 177, 354
Eco32I GATATC 1 cut(s) 361
EcoRII CCWGG 2 cut(s) 311, 386
EcoRV GATATC 1 cut(s) 361
EcoT14I CCWWGG 3 cut(s) 146, 177, 354
ErhI CCWWGG 3 cut(s) 146, 177, 354
FaeI CATG 3 cut(s) 89, 150, 181
FaiI YATR 4 cut(s) 87, 148, 179, 450
FatI CATG 3 cut(s) 85, 146, 177
FauI CCCGC 1 cut(s) 346
FbaI TGATCA 1 cut(s) 79
FblI GTMKAC 1 cut(s) 333
Fnu4HI GCNGC 2 cut(s) 42, 221
FokI GGATG 1 cut(s) 457
Fsp4HI GCNGC 2 cut(s) 42, 221
FspBI CTAG 1 cut(s) 207
GlaI GCGC 2 cut(s) 67, 383
GluI GCNGC 2 cut(s) 42, 221
GsuI CTGGAG 1 cut(s) 370
HaeII RGCGCY 2 cut(s) 69, 385
HaeIII GGCC 1 cut(s) 26
HapII CCGG 4 cut(s) 11, 50, 328, 453
HhaI GCGC 2 cut(s) 68, 384
Hin1I GRCGYC 1 cut(s) 375
Hin1II CATG 3 cut(s) 89, 150, 181
Hin6I GCGC 2 cut(s) 66, 382
HinP1I GCGC 2 cut(s) 66, 382
HincII GTYRAC 1 cut(s) 334
HindII GTYRAC 1 cut(s) 334
HinfI GANTC 2 cut(s) 262, 417
HpaII CCGG 4 cut(s) 11, 50, 328, 453
HphI GGTGA 2 cut(s) 39, 234
Hpy166II GTNNAC 3 cut(s) 187, 242, 334
Hpy188I TCNGA 3 cut(s) 139, 170, 269
Hpy188III TCNNGA 2 cut(s) 86, 114
Hpy8I GTNNAC 3 cut(s) 187, 242, 334
HpyAV CCTTC 5 cut(s) 115, 255, 285, 309, 359
HpyCH4III ACNGT 1 cut(s) 404
HpyCH4IV ACGT 1 cut(s) 375
HpyCH4V TGCA 2 cut(s) 122, 431
HpyF10VI GCNNNNNNNGC 2 cut(s) 313, 388
HpyF3I CTNAG 3 cut(s) 129, 136, 167
HpySE526I ACGT 1 cut(s) 375
Hsp92I GRCGYC 1 cut(s) 375
Hsp92II CATG 3 cut(s) 89, 150, 181
HspAI GCGC 2 cut(s) 66, 382
Ksp22I TGATCA 1 cut(s) 79
Kzo9I GATC 8 cut(s) 72, 79, 116, 139, 170, 225, 318, 392
LguI GCTCTTC 1 cut(s) 299
LmnI GCTCC 1 cut(s) 389
LweI GCATC 1 cut(s) 440
MaeI CTAG 1 cut(s) 207
MaeII ACGT 1 cut(s) 375
MaeIII GTNAC 2 cut(s) 6, 404
MalI GATC 8 cut(s) 74, 81, 118, 141, 172, 227, 320, 394
MboI GATC 8 cut(s) 72, 79, 116, 139, 170, 225, 318, 392
MboII GAAGA 3 cut(s) 68, 286, 426
MflI RGATCY 3 cut(s) 72, 139, 170
MluCI AATT 1 cut(s) 465
MlyI GAGTC 2 cut(s) 271, 426
MnlI CCTC 9 cut(s) 184, 204, 260, 263, 289, 298, 335, 361, 364
MroXI GAANNNNTTC 1 cut(s) 274
MseI TTAA 1 cut(s) 468
MslI CAYNNNNRTG 1 cut(s) 182
MspA1I CMGCKG 1 cut(s) 341
MspI CCGG 4 cut(s) 11, 50, 328, 453
MspR9I CCNGG 3 cut(s) 313, 329, 388
MvaI CCWGG 2 cut(s) 313, 388
MwoI GCNNNNNNNGC 2 cut(s) 313, 388
NciI CCSGG 1 cut(s) 329
NcoI CCATGG 2 cut(s) 146, 177
NdeII GATC 8 cut(s) 72, 79, 116, 139, 170, 225, 318, 392
NlaIII CATG 3 cut(s) 89, 150, 181
NmeAIII GCCGAG 3 cut(s) 94, 260, 440
NmuCI GTSAC 2 cut(s) 6, 404
PagI TCATGA 1 cut(s) 85
PciSI GCTCTTC 1 cut(s) 299
PcsI WCGNNNNNNNCGW 1 cut(s) 372
PdmI GAANNNNTTC 1 cut(s) 274
PkrI GCNGC 2 cut(s) 43, 222
PleI GAGTC 2 cut(s) 270, 425
PpsI GAGTC 2 cut(s) 270, 425
PshAI GACNNNNGTC 1 cut(s) 460
Psp6I CCWGG 2 cut(s) 311, 386
PspGI CCWGG 2 cut(s) 311, 386
PspPI GGNCC 1 cut(s) 25
PstI CTGCAG 1 cut(s) 124
PsuI RGATCY 3 cut(s) 72, 139, 170
RseI CAYNNNNRTG 1 cut(s) 182
SalI GTCGAC 1 cut(s) 332
SapI GCTCTTC 1 cut(s) 299
SaqAI TTAA 1 cut(s) 468
SatI GCNGC 2 cut(s) 42, 221
Sau3AI GATC 8 cut(s) 72, 79, 116, 139, 170, 225, 318, 392
Sau96I GGNCC 1 cut(s) 25
SchI GAGTC 2 cut(s) 271, 426
ScrFI CCNGG 3 cut(s) 313, 329, 388
SetI ASST 9 cut(s) 107, 130, 135, 168, 208, 239, 247, 314, 378
SfaNI GCATC 1 cut(s) 440
SfcI CTRYAG 1 cut(s) 120
SgrAI CRCCGGYG 1 cut(s) 10
SmiMI CAYNNNNRTG 1 cut(s) 182
Sse9I AATT 1 cut(s) 465
SsiI CCGC 4 cut(s) 42, 221, 256, 339
SspMI CTAG 1 cut(s) 207
StyD4I CCNGG 3 cut(s) 311, 327, 386
StyI CCWWGG 3 cut(s) 146, 177, 354
TaaI ACNGT 1 cut(s) 404
TaiI ACGT 1 cut(s) 378
TaqI TCGA 5 cut(s) 94, 101, 158, 333, 366
TasI AATT 1 cut(s) 465
TauI GCSGC 2 cut(s) 44, 223
Tru1I TTAA 1 cut(s) 468
Tru9I TTAA 1 cut(s) 468
TseFI GTSAC 2 cut(s) 6, 404
Tsp45I GTSAC 2 cut(s) 6, 404
TspDTI ATGAA 2 cut(s) 17, 102
TspGWI ACGGA 1 cut(s) 65
XmiI GTMKAC 1 cut(s) 333
XmnI GAANNNNTTC 1 cut(s) 274
XspI CTAG 1 cut(s) 207
ZraI GACGTC 1 cut(s) 376
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.