Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004003

Physical Location & Seq

Genomic Coordinates Reverse (-)

35288574 .. 35289515

Gene Structure 942 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ31914

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGCTAGCATGCATCTTGTTAACTCAGCTGTCAATGGATGACTTTAGACATCATAAGCAGAGGTCAAAACTTGGAGGCGATGCAAGTCAAAATATTAATGAAGGCGATGCAAGTCAAAATTTTAATGAAGACTTTGAGCTCTTGGGCTTTGGCGATGAAGATACTGGGGAGAGATTGAGCGACATATCTGATGGTGTTCTTTCAATGGGAACAGAAACCGATGGTTCAATGTCCAGTTCTGCTGTGGAGTTTACTCTTTTTCCTGAAGTTACAAAACCAACAGAACGCACAACTACTGAAACTCCAGAAGCCAAGAAAACTCAAGCTCAGAATGCTCTAGGCGAGAAGACACCATCCCATCCGACTGTAAGGTTTGCACCAACATCTAAACTTCCAAAGCCAACACCTAAGTTGGTCGATACAAAAGCCACTCGTTCATCATTGGTTAGAAGCTCGTCAAAGGTTTTGCCGAGTCCTAGGAAAGCTACTGCTGGAAGCAGCACCTCGTCGGTGAAGTCTGGCAAACGATGGCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0005886 GO:0006928 GO:0007017 GO:0007018 GO:0008150 GO:0009987 GO:0015630 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CH Kinesin Microtub_bd

Protein Analysis

178

Amino Acids

19.23

Weight (kDa)

6.84

Isoelectric Point (pI)

50.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004003)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63640 AT1G63640 AT1G63640 AT1G63640 AT1G63640 AT5G41310
fragaria_vesca	FvH4_5g02480 FvH4_5g02480 FvH4_5g02480
malus_domestica	MD06G1083300.v1.1 MD14G1105100.v1.1
prunus_persica	Prupe.5G100400_v2.0.a1 Prupe.5G100400_v2.0.a1
pyrus_communis	pycom06g08010 pycom14g10070
rosa_chinensis	RchiOBHm_Chr5g0040651 RchiOBHm_Chr7g0197631 RchiOBHm_Chr7g0197651
rosa_laevigata	RLG00000003921
rosa_multiflora	Rmu_sc0003916.1_g000019 Rmu_sc0006732.1_g000004
rosa_roxburghii	Rroxscaffold_3G00258310
rosa_rugosa	Rorug07G0042000 Rorug07G0042100
rosa_samantha	Rh5BG277300 Rh7AG166400 Rh7BG168500 Rh7BG168600 Rh7CG174900 Rh7DG168100 Rh7DG168200
rosa_wichuraiana	Rw5G025550 Rw7G014490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	118
AcuI	CTGAAG	1 cut(s)	285
AgsI	TTSAA	2 cut(s)	204, 228
AluBI	AGCT	5 cut(s)	28, 139, 326, 453, 485
AluI	AGCT	5 cut(s)	28, 139, 326, 453, 485
Alw21I	GWGCWC	1 cut(s)	141
ApeKI	GCWGC	1 cut(s)	498
ApoI	RAATTY	1 cut(s)	118
AseI	ATTAAT	1 cut(s)	96
AspA2I	CCTAGG	1 cut(s)	476
AsuHPI	GGTGA	1 cut(s)	523
AsuNHI	GCTAGC	1 cut(s)	4
AvrII	CCTAGG	1 cut(s)	476
BanII	GRGCYC	1 cut(s)	141
BbsI	GAAGAC	2 cut(s)	135, 353
Bbv12I	GWGCWC	1 cut(s)	141
BbvI	GCAGC	1 cut(s)	510
BccI	CCATC	5 cut(s)	185, 215, 361, 366, 522
BfaI	CTAG	3 cut(s)	5, 338, 477
BisI	GCNGC	1 cut(s)	499
BlnI	CCTAGG	1 cut(s)	476
BlsI	GCNGC	1 cut(s)	500
BmrI	ACTGGG	1 cut(s)	174
BmsI	GCATC	3 cut(s)	21, 70, 97
BmtI	GCTAGC	1 cut(s)	8
BmuI	ACTGGG	1 cut(s)	174
BpiI	GAAGAC	2 cut(s)	135, 353
BpmI	CTGGAG	1 cut(s)	288
BpuEI	CTTGAG	1 cut(s)	306
BsaJI	CCNNGG	1 cut(s)	476
BsaXI	ACNNNNNCTCC	2 cut(s)	286, 316
Bse1I	ACTGG	2 cut(s)	169, 234
BseDI	CCNNGG	1 cut(s)	476
BseGI	GGATG	3 cut(s)	43, 353, 358
BseMII	CTCAG	2 cut(s)	38, 341
BseNI	ACTGG	2 cut(s)	169, 234
BseXI	GCAGC	1 cut(s)	510
BsiHKAI	GWGCWC	1 cut(s)	141
BsmI	GAATGC	1 cut(s)	337
Bsp1286I	GDGCHC	1 cut(s)	141
BspCNI	CTCAG	2 cut(s)	37, 340
BspOI	GCTAGC	1 cut(s)	8
BsrI	ACTGG	2 cut(s)	169, 234
BssECI	CCNNGG	1 cut(s)	476
BssT1I	CCWWGG	1 cut(s)	476
Bst4CI	ACNGT	1 cut(s)	367
BstC8I	GCNNGC	2 cut(s)	6, 10
BstDEI	CTNAG	3 cut(s)	24, 327, 408
BstF5I	GGATG	3 cut(s)	43, 353, 358
BstMWI	GCNNNNNNNGC	1 cut(s)	332
BstNSI	RCATGY	1 cut(s)	12
BstV1I	GCAGC	1 cut(s)	510
BstV2I	GAAGAC	2 cut(s)	135, 353
BtgZI	GCGATG	3 cut(s)	93, 120, 168
BtsCI	GGATG	3 cut(s)	43, 353, 358
Cac8I	GCNNGC	2 cut(s)	6, 10
CviAII	CATG	1 cut(s)	9
CviJI	RGCY	9 cut(s)	28, 139, 147, 311, 326, 400, 428, 453, 485
CviKI_1	RGCY	9 cut(s)	28, 139, 147, 311, 326, 400, 428, 453, 485
DdeI	CTNAG	3 cut(s)	24, 327, 408
Ecl136II	GAGCTC	1 cut(s)	139
Eco130I	CCWWGG	1 cut(s)	476
Eco24I	GRGCYC	1 cut(s)	141
Eco53kI	GAGCTC	1 cut(s)	139
Eco57I	CTGAAG	1 cut(s)	285
EcoICRI	GAGCTC	1 cut(s)	139
EcoT14I	CCWWGG	1 cut(s)	476
EcoT22I	ATGCAT	1 cut(s)	14
EcoT38I	GRGCYC	1 cut(s)	141
ErhI	CCWWGG	1 cut(s)	476
FaeI	CATG	1 cut(s)	12
FaiI	YATR	3 cut(s)	10, 54, 185
FatI	CATG	1 cut(s)	8
Fnu4HI	GCNGC	1 cut(s)	499
FokI	GGATG	3 cut(s)	50, 340, 345
FriOI	GRGCYC	1 cut(s)	141
Fsp4HI	GCNGC	1 cut(s)	499
FspBI	CTAG	3 cut(s)	5, 338, 477
GluI	GCNGC	1 cut(s)	499
GsuI	CTGGAG	1 cut(s)	288
Hin1II	CATG	1 cut(s)	12
HincII	GTYRAC	1 cut(s)	21
HindII	GTYRAC	1 cut(s)	21
HinfI	GANTC	1 cut(s)	472
HpaI	GTTAAC	1 cut(s)	21
HphI	GGTGA	1 cut(s)	523
Hpy166II	GTNNAC	2 cut(s)	21, 252
Hpy188I	TCNGA	3 cut(s)	190, 330, 363
Hpy188III	TCNNGA	2 cut(s)	263, 305
Hpy8I	GTNNAC	2 cut(s)	21, 252
Hpy99I	CGWCG	1 cut(s)	511
HpyAV	CCTTC	1 cut(s)	95
HpyCH4III	ACNGT	1 cut(s)	367
HpyCH4V	TGCA	4 cut(s)	12, 83, 110, 377
HpyF10VI	GCNNNNNNNGC	1 cut(s)	332
HpyF3I	CTNAG	3 cut(s)	24, 327, 408
Hsp92II	CATG	1 cut(s)	12
KspAI	GTTAAC	1 cut(s)	21
LpnPI	CCDG	6 cut(s)	150, 247, 276, 318, 477, 504
Lsp1109I	GCAGC	1 cut(s)	510
LweI	GCATC	3 cut(s)	21, 70, 97
MaeI	CTAG	3 cut(s)	5, 338, 477
MaeIII	GTNAC	1 cut(s)	268
MboII	GAAGA	3 cut(s)	140, 170, 358
MhlI	GDGCHC	1 cut(s)	141
MluCI	AATT	1 cut(s)	118
MlyI	GAGTC	1 cut(s)	481
MmeI	TCCRAC	1 cut(s)	386
MnlI	CCTC	3 cut(s)	54, 68, 514
Mph1103I	ATGCAT	1 cut(s)	14
MseI	TTAA	3 cut(s)	20, 96, 123
MspA1I	CMGCKG	1 cut(s)	28
Mva1269I	GAATGC	1 cut(s)	337
MwoI	GCNNNNNNNGC	1 cut(s)	332
NheI	GCTAGC	1 cut(s)	4
NlaIII	CATG	1 cut(s)	12
NmeAIII	GCCGAG	1 cut(s)	495
NsiI	ATGCAT	1 cut(s)	14
NspI	RCATGY	1 cut(s)	12
PaeI	GCATGC	1 cut(s)	12
PctI	GAATGC	1 cut(s)	337
PkrI	GCNGC	1 cut(s)	500
PleI	GAGTC	1 cut(s)	480
PpsI	GAGTC	1 cut(s)	480
PshBI	ATTAAT	1 cut(s)	96
Psp124BI	GAGCTC	1 cut(s)	141
PvuII	CAGCTG	1 cut(s)	28
SacI	GAGCTC	1 cut(s)	141
SaqAI	TTAA	3 cut(s)	20, 96, 123
SatI	GCNGC	1 cut(s)	499
SchI	GAGTC	1 cut(s)	481
SduI	GDGCHC	1 cut(s)	141
SfaNI	GCATC	3 cut(s)	21, 70, 97
SmlI	CTYRAG	1 cut(s)	321
SmoI	CTYRAG	1 cut(s)	321
SphI	GCATGC	1 cut(s)	12
Sse9I	AATT	1 cut(s)	118
SspI	AATATT	1 cut(s)	94
SspMI	CTAG	3 cut(s)	5, 338, 477
SstI	GAGCTC	1 cut(s)	141
StyI	CCWWGG	1 cut(s)	476
TaaI	ACNGT	1 cut(s)	367
TaqI	TCGA	1 cut(s)	417
TasI	AATT	1 cut(s)	118
Tru1I	TTAA	3 cut(s)	20, 96, 123
Tru9I	TTAA	3 cut(s)	20, 96, 123
TseI	GCWGC	1 cut(s)	498
TspDTI	ATGAA	4 cut(s)	114, 141, 171, 426
VspI	ATTAAT	1 cut(s)	96
XapI	RAATTY	1 cut(s)	118
XceI	RCATGY	1 cut(s)	12
XcmI	CCANNNNNNNNNTGG	1 cut(s)	241
XmaJI	CCTAGG	1 cut(s)	476
XspI	CTAG	3 cut(s)	5, 338, 477
Zsp2I	ATGCAT	1 cut(s)	14

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.