Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006732.1

Orthogroup ID

OG0004003

Physical Location & Seq

Genomic Coordinates Forward (+)

16963 .. 19102

Gene Structure 2140 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006732.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1281 bp

atgcatcttgttaactcaactgctgatgtcctagagttgatgaatattggcttggcaaatagggcagtcggtgctaccgccctaaacgaaagaagtagcagatctcacagtgttctgactgttcatgttcgtggcgtggatttgaagactgacactgctatccgcggtagcctacacctagtggatcttgctggcagcgaacgagtggatcgctctgaagctaccggagataggcttagggaggcacaacatataaacaaatcattgtcagcccttggagatgtaatctttgctcttgcgcaaaagaatgcacatgtgccatatagaaatagcaaattaactcaagtgctccagagttctttagggggccaagcgaagacgctcatgtttgtacagcttaatcctgatactcaatcattctctgaaactttgagtacactgaagtttgcagagagggtttctggtgttgaattaggtgctgcaaaaagcaacaaggaaggaagatatgtaagagagcttatggaccaggtggcatcgtttaaagagacgattgccaagaaagatgaggagattgatcgattgctgaaggccaatagtaatggggtgtaccgtggcatgagcccactaagatctgcgtcttcctctccaagaagatactcgattgggagtcctcgacagaggaaagcctcaagcatagttgataaagtggctccatatagggatagtttgtcggaggcggcatacgataagcattctgaagttagttctcagctgtcaatggatgactttagacatcataagcagaggtcaaaacttggaggcgatgcaagtcaaaatatcaatgaaggcgatgcaaatcaaaattttaatgaagactttgagctcttgggctttggcgatgaagatactggggagagattgagcgacatatctgatggtgttctttcaatgggaacagaaaccgatggttcaatgtccagttctgctgtggagtttactctttttcctgaagttacaaaaccaacagaacgcacaactactgaaactccagaagccaagaaaactcaagctcagaatgctctaggcgagaagacaccatcccatccgactgtaaggtttgcaccaacatctaaacttccaaagccaacaccgaagttggtcgatacaaaagccactcgttcatcattggttagaagctcgtcaaaggttttgccgagtcctaggaaacctactgttggaagcagcacctcgtcggtgaagtctggcaaacgatggcaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0005886 GO:0006928 GO:0007017 GO:0007018 GO:0008150 GO:0009987 GO:0015630 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CH Kinesin Microtub_bd

Protein Analysis

426

Amino Acids

46.38

Weight (kDa)

9.31

Isoelectric Point (pI)

42.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004003)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63640 AT1G63640 AT1G63640 AT1G63640 AT1G63640 AT5G41310
fragaria_vesca	FvH4_5g02480 FvH4_5g02480 FvH4_5g02480
malus_domestica	MD06G1083300.v1.1 MD14G1105100.v1.1
prunus_persica	Prupe.5G100400_v2.0.a1 Prupe.5G100400_v2.0.a1
pyrus_communis	pycom06g08010 pycom14g10070
rosa_chinensis	RchiOBHm_Chr5g0040651 RchiOBHm_Chr7g0197631 RchiOBHm_Chr7g0197651
rosa_laevigata	RLG00000003921
rosa_multiflora	Rmu_sc0003916.1_g000019 Rmu_sc0006732.1_g000004
rosa_roxburghii	Rroxscaffold_3G00258310
rosa_rugosa	Rorug07G0042000 Rorug07G0042100
rosa_samantha	Rh5BG277300 Rh7AG166400 Rh7BG168500 Rh7BG168600 Rh7CG174900 Rh7DG168100 Rh7DG168200
rosa_wichuraiana	Rw5G025550 Rw7G014490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	300
AccII	CGCG	1 cut(s)	165
AciI	CCGC	4 cut(s)	78, 163, 165, 737
AclWI	GGATC	2 cut(s)	192, 216
AcsI	RAATTY	1 cut(s)	862
AcuI	CTGAAG	5 cut(s)	237, 461, 605, 777, 1029
AdeI	CACNNNGTG	1 cut(s)	181
AfaI	GTAC	3 cut(s)	393, 436, 608
AfiI	CCNNNNNNNGG	2 cut(s)	231, 1235
AflIII	ACRYGT	1 cut(s)	313
AgsI	TTSAA	4 cut(s)	145, 470, 948, 972
AjnI	CCWGG	1 cut(s)	525
AjuI	GAANNNNNNNTTGG	2 cut(s)	35, 67
AluBI	AGCT	7 cut(s)	221, 397, 517, 772, 883, 1070, 1197
AluI	AGCT	7 cut(s)	221, 397, 517, 772, 883, 1070, 1197
Alw21I	GWGCWC	2 cut(s)	351, 885
Alw26I	GTCTC	1 cut(s)	539
AlwI	GGATC	2 cut(s)	192, 216
AoxI	GGCC	2 cut(s)	367, 588
ApeKI	GCWGC	3 cut(s)	195, 479, 1242
ApoI	RAATTY	1 cut(s)	862
AspA2I	CCTAGG	1 cut(s)	1220
AspLEI	GCGC	1 cut(s)	301
AspS9I	GGNCC	2 cut(s)	367, 523
AsuHPI	GGTGA	1 cut(s)	1267
AvaII	GGWCC	1 cut(s)	523
AvrII	CCTAGG	1 cut(s)	1220
BanII	GRGCYC	2 cut(s)	623, 885
BbsI	GAAGAC	5 cut(s)	152, 383, 630, 879, 1097
Bbv12I	GWGCWC	2 cut(s)	351, 885
BbvI	GCAGC	3 cut(s)	207, 466, 1254
BccI	CCATC	5 cut(s)	929, 959, 1105, 1110, 1266
BciT130I	CCWGG	1 cut(s)	527
BcoDI	GTCTC	1 cut(s)	539
BfaI	CTAG	4 cut(s)	32, 179, 1082, 1221
BglII	AGATCT	2 cut(s)	101, 629
BisI	GCNGC	4 cut(s)	196, 480, 738, 1243
BlnI	CCTAGG	1 cut(s)	1220
BlsI	GCNGC	4 cut(s)	197, 481, 739, 1244
Bme1390I	CCNGG	1 cut(s)	527
Bme18I	GGWCC	1 cut(s)	523
BmgT120I	GGNCC	2 cut(s)	367, 523
BmiI	GGNNCC	2 cut(s)	368, 711
BmrFI	CCNGG	1 cut(s)	527
BmrI	ACTGGG	1 cut(s)	918
BmsI	GCATC	4 cut(s)	13, 542, 814, 841
BmuI	ACTGGG	1 cut(s)	918
BpiI	GAAGAC	5 cut(s)	152, 383, 630, 879, 1097
BpmI	CTGGAG	2 cut(s)	335, 1032
Bpu10I	CCTNAGC	1 cut(s)	236
BpuEI	CTTGAG	3 cut(s)	327, 673, 1050
Bsa29I	ATCGAT	1 cut(s)	577
BsaBI	GATNNNNATC	1 cut(s)	855
BsaJI	CCNNGG	4 cut(s)	163, 274, 610, 1220
BsaWI	WCCGGW	1 cut(s)	224
BsaXI	ACNNNNNCTCC	2 cut(s)	1030, 1060
Bsc4I	CCNNNNNNNGG	2 cut(s)	231, 1235
Bse1I	ACTGG	2 cut(s)	913, 978
Bse8I	GATNNNNATC	1 cut(s)	855
BseBI	CCWGG	1 cut(s)	527
BseCI	ATCGAT	1 cut(s)	577
BseDI	CCNNGG	4 cut(s)	163, 274, 610, 1220
BseGI	GGATG	3 cut(s)	787, 1097, 1102
BseJI	GATNNNNATC	1 cut(s)	855
BseLI	CCNNNNNNNGG	2 cut(s)	231, 1235
BseMII	CTCAG	2 cut(s)	782, 1085
BseNI	ACTGG	2 cut(s)	913, 978
BseRI	GAGGAG	1 cut(s)	581
BseXI	GCAGC	3 cut(s)	207, 466, 1254
Bsh1236I	CGCG	1 cut(s)	165
BshFI	GGCC	2 cut(s)	369, 590
BshVI	ATCGAT	1 cut(s)	577
BsiHKAI	GWGCWC	2 cut(s)	351, 885
BsiSI	CCGG	1 cut(s)	225
BslI	CCNNNNNNNGG	2 cut(s)	231, 1235
BsmAI	GTCTC	1 cut(s)	539
BsmBI	CGTCTC	1 cut(s)	539
BsmI	GAATGC	3 cut(s)	313, 751, 1081
BsnI	GGCC	2 cut(s)	369, 590
Bsp1286I	GDGCHC	3 cut(s)	351, 623, 885
Bsp1407I	TGTACA	1 cut(s)	391
Bsp143I	GATC	5 cut(s)	101, 184, 208, 574, 629
BspACI	CCGC	4 cut(s)	78, 163, 165, 737
BspANI	GGCC	2 cut(s)	369, 590
BspCNI	CTCAG	2 cut(s)	781, 1084
BspDI	ATCGAT	1 cut(s)	577
BspFNI	CGCG	1 cut(s)	165
BspLI	GGNNCC	2 cut(s)	368, 711
BspPI	GGATC	2 cut(s)	192, 216
BsrGI	TGTACA	1 cut(s)	391
BsrI	ACTGG	2 cut(s)	913, 978
BssECI	CCNNGG	4 cut(s)	163, 274, 610, 1220
BssMI	GATC	5 cut(s)	101, 184, 208, 574, 629
BssT1I	CCWWGG	2 cut(s)	274, 1220
Bst2UI	CCWGG	1 cut(s)	527
Bst4CI	ACNGT	5 cut(s)	110, 121, 611, 1111, 1234
BstAPI	GCANNNNNTGC	1 cut(s)	71
BstAUI	TGTACA	1 cut(s)	391
BstC8I	GCNNGC	1 cut(s)	193
BstDEI	CTNAG	4 cut(s)	236, 626, 768, 1071
BstDSI	CCRYGG	2 cut(s)	163, 610
BstF5I	GGATG	3 cut(s)	787, 1097, 1102
BstFNI	CGCG	1 cut(s)	165
BstHHI	GCGC	1 cut(s)	301
BstKTI	GATC	5 cut(s)	104, 187, 211, 577, 632
BstMAI	GTCTC	1 cut(s)	539
BstMBI	GATC	5 cut(s)	101, 184, 208, 574, 629
BstMWI	GCNNNNNNNGC	3 cut(s)	62, 71, 1076
BstNI	CCWGG	1 cut(s)	527
BstNSI	RCATGY	1 cut(s)	317
BstSCI	CCNGG	1 cut(s)	525
BstUI	CGCG	1 cut(s)	165
BstV1I	GCAGC	3 cut(s)	207, 466, 1254
BstV2I	GAAGAC	5 cut(s)	152, 383, 630, 879, 1097
BstX2I	RGATCY	3 cut(s)	101, 184, 629
BstYI	RGATCY	3 cut(s)	101, 184, 629
Bsu15I	ATCGAT	1 cut(s)	577
BsuRI	GGCC	2 cut(s)	369, 590
BsuTUI	ATCGAT	1 cut(s)	577
BtgI	CCRYGG	2 cut(s)	163, 610
BtgZI	GCGATG	3 cut(s)	837, 864, 912
BtsCI	GGATG	3 cut(s)	787, 1097, 1102
BtsI	GCAGTG	1 cut(s)	153
BtsIMutI	CAGTG	3 cut(s)	115, 153, 437
Cac8I	GCNNGC	1 cut(s)	193
CfoI	GCGC	1 cut(s)	301
Cfr13I	GGNCC	2 cut(s)	367, 523
Cfr42I	CCGCGG	1 cut(s)	166
ClaI	ATCGAT	1 cut(s)	577
CseI	GACGC	2 cut(s)	388, 624
CsiI	ACCWGGT	1 cut(s)	525
Csp6I	GTAC	3 cut(s)	392, 435, 607
CviAII	CATG	4 cut(s)	125, 314, 385, 616
CviQI	GTAC	3 cut(s)	392, 435, 607
DdeI	CTNAG	4 cut(s)	236, 626, 768, 1071
DpnI	GATC	5 cut(s)	103, 186, 210, 576, 631
DpnII	GATC	5 cut(s)	101, 184, 208, 574, 629
DraI	TTTAAA	1 cut(s)	541
DraIII	CACNNNGTG	1 cut(s)	181
Ecl136II	GAGCTC	1 cut(s)	883
Eco130I	CCWWGG	2 cut(s)	274, 1220
Eco24I	GRGCYC	2 cut(s)	623, 885
Eco47I	GGWCC	1 cut(s)	523
Eco53kI	GAGCTC	1 cut(s)	883
Eco57I	CTGAAG	5 cut(s)	237, 461, 605, 777, 1029
EcoICRI	GAGCTC	1 cut(s)	883
EcoRII	CCWGG	1 cut(s)	525
EcoT14I	CCWWGG	2 cut(s)	274, 1220
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	2 cut(s)	623, 885
ErhI	CCWWGG	2 cut(s)	274, 1220
Esp3I	CGTCTC	1 cut(s)	539
FaeI	CATG	4 cut(s)	128, 317, 388, 619
FatI	CATG	4 cut(s)	124, 313, 384, 615
Fnu4HI	GCNGC	4 cut(s)	196, 480, 738, 1243
FokI	GGATG	3 cut(s)	794, 1084, 1089
FriOI	GRGCYC	2 cut(s)	623, 885
Fsp4HI	GCNGC	4 cut(s)	196, 480, 738, 1243
FspBI	CTAG	4 cut(s)	32, 179, 1082, 1221
FspI	TGCGCA	1 cut(s)	300
GlaI	GCGC	1 cut(s)	300
GluI	GCNGC	4 cut(s)	196, 480, 738, 1243
GsuI	CTGGAG	2 cut(s)	335, 1032
HaeIII	GGCC	2 cut(s)	369, 590
HapII	CCGG	1 cut(s)	225
HgaI	GACGC	2 cut(s)	388, 624
HhaI	GCGC	1 cut(s)	301
Hin1II	CATG	4 cut(s)	128, 317, 388, 619
Hin6I	GCGC	1 cut(s)	299
HinP1I	GCGC	1 cut(s)	299
HincII	GTYRAC	1 cut(s)	13
HindII	GTYRAC	1 cut(s)	13
HinfI	GANTC	2 cut(s)	667, 1216
HpaI	GTTAAC	1 cut(s)	13
HpaII	CCGG	1 cut(s)	225
HphI	GGTGA	1 cut(s)	1267
Hpy166II	GTNNAC	4 cut(s)	13, 437, 607, 996
Hpy188I	TCNGA	8 cut(s)	117, 217, 424, 733, 757, 934, 1074, 1107
Hpy188III	TCNNGA	4 cut(s)	352, 404, 1007, 1049
Hpy8I	GTNNAC	4 cut(s)	13, 437, 607, 996
Hpy99I	CGWCG	1 cut(s)	1255
HpyAV	CCTTC	3 cut(s)	491, 580, 839
HpyCH4III	ACNGT	5 cut(s)	110, 121, 611, 1111, 1234
HpyCH4V	TGCA	7 cut(s)	4, 311, 449, 482, 827, 854, 1121
HpyF10VI	GCNNNNNNNGC	3 cut(s)	62, 71, 1076
HpyF3I	CTNAG	4 cut(s)	236, 626, 768, 1071
Hsp92II	CATG	4 cut(s)	128, 317, 388, 619
HspAI	GCGC	1 cut(s)	299
KspAI	GTTAAC	1 cut(s)	13
KspI	CCGCGG	1 cut(s)	166
Kzo9I	GATC	5 cut(s)	101, 184, 208, 574, 629
LmnI	GCTCC	2 cut(s)	354, 715
Lsp1109I	GCAGC	3 cut(s)	207, 466, 1254
LweI	GCATC	4 cut(s)	13, 542, 814, 841
MabI	ACCWGGT	1 cut(s)	525
MaeI	CTAG	4 cut(s)	32, 179, 1082, 1221
MaeIII	GTNAC	1 cut(s)	1012
MalI	GATC	5 cut(s)	103, 186, 210, 576, 631
MboI	GATC	5 cut(s)	101, 184, 208, 574, 629
MboII	GAAGA	8 cut(s)	157, 388, 513, 630, 663, 884, 914, 1102
MflI	RGATCY	3 cut(s)	101, 184, 629
MhlI	GDGCHC	3 cut(s)	351, 623, 885
MluCI	AATT	3 cut(s)	335, 470, 862
MlyI	GAGTC	2 cut(s)	676, 1225
MmeI	TCCRAC	3 cut(s)	711, 1130, 1216
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	5 cut(s)	12, 338, 399, 540, 867
MslI	CAYNNNNRTG	1 cut(s)	129
MspA1I	CMGCKG	2 cut(s)	165, 772
MspI	CCGG	1 cut(s)	225
MspR9I	CCNGG	1 cut(s)	527
Mva1269I	GAATGC	3 cut(s)	313, 751, 1081
MvaI	CCWGG	1 cut(s)	527
MvnI	CGCG	1 cut(s)	165
MwoI	GCNNNNNNNGC	3 cut(s)	62, 71, 1076
NdeII	GATC	5 cut(s)	101, 184, 208, 574, 629
NlaIII	CATG	4 cut(s)	128, 317, 388, 619
NlaIV	GGNNCC	2 cut(s)	368, 711
NmeAIII	GCCGAG	1 cut(s)	1239
NsbI	TGCGCA	1 cut(s)	300
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	317
PciI	ACATGT	1 cut(s)	313
PctI	GAATGC	3 cut(s)	313, 751, 1081
PkrI	GCNGC	4 cut(s)	197, 481, 739, 1244
PleI	GAGTC	2 cut(s)	675, 1224
PpsI	GAGTC	2 cut(s)	675, 1224
PscI	ACATGT	1 cut(s)	313
Psp124BI	GAGCTC	1 cut(s)	885
Psp6I	CCWGG	1 cut(s)	525
PspGI	CCWGG	1 cut(s)	525
PspN4I	GGNNCC	2 cut(s)	368, 711
PspPI	GGNCC	2 cut(s)	367, 523
PsuI	RGATCY	3 cut(s)	101, 184, 629
PvuII	CAGCTG	1 cut(s)	772
RsaI	GTAC	3 cut(s)	393, 436, 608
RsaNI	GTAC	3 cut(s)	392, 435, 607
RseI	CAYNNNNRTG	1 cut(s)	129
SacI	GAGCTC	1 cut(s)	885
SacII	CCGCGG	1 cut(s)	166
SaqAI	TTAA	5 cut(s)	12, 338, 399, 540, 867
SatI	GCNGC	4 cut(s)	196, 480, 738, 1243
Sau3AI	GATC	5 cut(s)	101, 184, 208, 574, 629
Sau96I	GGNCC	2 cut(s)	367, 523
SchI	GAGTC	2 cut(s)	676, 1225
ScrFI	CCNGG	1 cut(s)	527
SduI	GDGCHC	3 cut(s)	351, 623, 885
SexAI	ACCWGGT	1 cut(s)	525
SfaNI	GCATC	4 cut(s)	13, 542, 814, 841
Sfr303I	CCGCGG	1 cut(s)	166
SgrBI	CCGCGG	1 cut(s)	166
SinI	GGWCC	1 cut(s)	523
SmiMI	CAYNNNNRTG	1 cut(s)	129
SmlI	CTYRAG	3 cut(s)	342, 688, 1065
SmoI	CTYRAG	3 cut(s)	342, 688, 1065
Sse9I	AATT	3 cut(s)	335, 470, 862
SsiI	CCGC	4 cut(s)	78, 163, 165, 737
SspI	AATATT	1 cut(s)	46
SspMI	CTAG	4 cut(s)	32, 179, 1082, 1221
SstI	GAGCTC	1 cut(s)	885
StyD4I	CCNGG	1 cut(s)	525
StyI	CCWWGG	2 cut(s)	274, 1220
TaaI	ACNGT	5 cut(s)	110, 121, 611, 1111, 1234
TaqI	TCGA	4 cut(s)	577, 659, 673, 1161
TasI	AATT	3 cut(s)	335, 470, 862
TatI	WGTACW	2 cut(s)	391, 434
TauI	GCSGC	1 cut(s)	740
Tru1I	TTAA	5 cut(s)	12, 338, 399, 540, 867
Tru9I	TTAA	5 cut(s)	12, 338, 399, 540, 867
TscAI	CASTG	3 cut(s)	115, 160, 444
TseI	GCWGC	3 cut(s)	195, 479, 1242
TspDTI	ATGAA	6 cut(s)	56, 113, 858, 885, 915, 1170
TspRI	CASTG	3 cut(s)	115, 160, 444
VpaK11BI	GGWCC	1 cut(s)	523
XapI	RAATTY	1 cut(s)	862
XceI	RCATGY	1 cut(s)	317
XcmI	CCANNNNNNNNNTGG	1 cut(s)	985
XmaJI	CCTAGG	1 cut(s)	1220
XspI	CTAG	4 cut(s)	32, 179, 1082, 1221
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.