Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0010743

Physical Location & Seq

Genomic Coordinates Reverse (-)

66648038 .. 66649036

Gene Structure 999 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ33766

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGCAATTTCTCTCATCGTATGCTTTCACTTATATCCTTTCCTTACAGGTGAGGCTACGTGAGGTCTTAGAGGATGGCCAAGTTCATACAAAAAGGTTAGGGAGTCACAGAGGCGCTGTTCACAAGCTGGCCGTAGAGCCTGGAAACCCCAACATACTTTACAGCTGTGGTGACGATTCTTTTATTCAACACTTTGATCTGCGAAGCAATACTGCTACGAAGCTATTCAGTTGCTCCAAATTGATAAGAGGAGAGCAGCATCCTTTCATGTTAGATTTGTATGACATGGTGATTGACCCATGGAATCCAAACTACTTTTGTCTAGGAGGCAATGATGCGTATGCACGCGTCTATGACATGAGAAAATGCTGGCAGGATGCTTCAGGTGGTTTAGTTAAACCTGTGAACACATTTCGCCCTGCTCACCTGATTCAGACAACCCATTTTATGATCACGGGGTTGGCGTACTCCAACTCCGGTGAGCTACTTGTGAGTTATAGTGATGAGCACATTTATCTGTTCCAGAAGAATATGGGGTTGGGTCATTCCCCATCGTTCCTACCTAAAGACATGGCGGAGCTTGACATGCCAGAACAATTCGTTGGTCATAGAAATATAAACACATGTAGAGTGAGTTTCTTTGGGCCAAATGATGAGTATGTCTTGAGTGGGAGTTATTGCGGCCATATTTTCATATGGAAGAAGAATGGAGGTGAACTTATTCGTGTTATGATGGGCGATTCTCTCGGTGTACATGACATTCAGCCGCATCCACATAATCCGGTCATTACCACCGGCGGATCGGGAAACAATCTAAAGCTCTGGACTCCTATGGCAAATGATCATGCATCTCCACTGCCTGACAACATTACACAGGTGCTTTCTCAATCTCTCGCTGTCTCGCAGAGTAAAAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005739 GO:0005829 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0019538 GO:0031461 GO:0031974 GO:0031981 GO:0032991 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043687 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:0080008 GO:1901564 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

305

Amino Acids

34.27

Weight (kDa)

6.55

Isoelectric Point (pI)

45.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_WDR5	PF25175	196 - 275	1.4e-07	WDR5 beta-propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010743)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45620 AT3G45620
fragaria_vesca	FvH4_3g33730 FvH4_3g34190
rosa_chinensis	RchiOBHm_Chr5g0061271
rosa_laevigata	RLG00000031642 RLG00000035447 RLG00000035448
rosa_multiflora	Rmu_sc0007612.1_g000043
rosa_roxburghii	Rroxscaffold_1G00019440
rosa_rugosa	Rorug04G0441700 Rorug05G0339200
rosa_samantha	Rh5AG071700 Rh5AG400400 Rh5BG068100 Rh5BG413500 Rh5CG438000 Rh5DG068300 Rh5DG427600
rosa_wichuraiana	Rw5G037730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	348
AciI	CCGC	4 cut(s)	575, 681, 767, 798
AclWI	GGATC	1 cut(s)	808
AcoI	YGGCCR	3 cut(s)	76, 129, 682
AcuI	CTGAAG	1 cut(s)	366
AfaI	GTAC	2 cut(s)	467, 753
AflIII	ACRYGT	2 cut(s)	346, 623
AgsI	TTSAA	1 cut(s)	188
AjnI	CCWGG	1 cut(s)	139
AjuI	GAANNNNNNNTTGG	4 cut(s)	521, 553, 585, 617
AluBI	AGCT	6 cut(s)	127, 165, 223, 484, 580, 820
AluI	AGCT	6 cut(s)	127, 165, 223, 484, 580, 820
Alw21I	GWGCWC	1 cut(s)	510
Alw26I	GTCTC	1 cut(s)	904
AlwI	GGATC	1 cut(s)	808
AoxI	GGCC	4 cut(s)	76, 129, 644, 682
ApeKI	GCWGC	1 cut(s)	256
Asp700I	GAANNNNTTC	2 cut(s)	224, 720
AspLEI	GCGC	1 cut(s)	116
AspS9I	GGNCC	1 cut(s)	644
AsuHPI	GGTGA	6 cut(s)	61, 182, 301, 416, 491, 725
BalI	TGGCCA	1 cut(s)	78
Bbv12I	GWGCWC	1 cut(s)	510
BbvI	GCAGC	1 cut(s)	268
BccI	CCATC	3 cut(s)	68, 559, 727
BceAI	ACGGC	1 cut(s)	116
BciT130I	CCWGG	1 cut(s)	141
BclI	TGATCA	2 cut(s)	450, 841
BcoDI	GTCTC	1 cut(s)	904
BfaI	CTAG	1 cut(s)	323
BfoI	RGCGCY	1 cut(s)	117
BisI	GCNGC	3 cut(s)	257, 682, 767
BlsI	GCNGC	3 cut(s)	258, 683, 768
Bme1390I	CCNGG	1 cut(s)	141
BmgT120I	GGNCC	1 cut(s)	644
BmrFI	CCNGG	1 cut(s)	141
BmsI	GCATC	5 cut(s)	268, 325, 367, 778, 857
BpuEI	CTTGAG	1 cut(s)	685
BsaAI	YACGTR	1 cut(s)	59
BsaJI	CCNNGG	1 cut(s)	299
BsaWI	WCCGGW	2 cut(s)	476, 781
BsaXI	ACNNNNNCTCC	2 cut(s)	458, 488
Bse118I	RCCGGY	1 cut(s)	794
Bse3DI	GCAATG	1 cut(s)	337
BseBI	CCWGG	1 cut(s)	141
BseDI	CCNNGG	1 cut(s)	299
BseGI	GGATG	4 cut(s)	79, 259, 382, 769
BseMI	GCAATG	1 cut(s)	337
BseRI	GAGGAG	1 cut(s)	264
BseXI	GCAGC	1 cut(s)	268
Bsh1236I	CGCG	1 cut(s)	348
BshFI	GGCC	4 cut(s)	78, 131, 646, 684
BsiHKAI	GWGCWC	1 cut(s)	510
BsiSI	CCGG	3 cut(s)	477, 782, 795
BsmAI	GTCTC	1 cut(s)	904
BsnI	GGCC	4 cut(s)	78, 131, 646, 684
Bsp1286I	GDGCHC	1 cut(s)	510
Bsp1407I	TGTACA	1 cut(s)	751
Bsp143I	GATC	4 cut(s)	196, 450, 800, 841
Bsp19I	CCATGG	1 cut(s)	299
BspACI	CCGC	4 cut(s)	575, 681, 767, 798
BspANI	GGCC	4 cut(s)	78, 131, 646, 684
BspFNI	CGCG	1 cut(s)	348
BspPI	GGATC	1 cut(s)	808
BsrDI	GCAATG	1 cut(s)	337
BsrFI	RCCGGY	1 cut(s)	794
BsrGI	TGTACA	1 cut(s)	751
BssAI	RCCGGY	1 cut(s)	794
BssECI	CCNNGG	1 cut(s)	299
BssMI	GATC	4 cut(s)	196, 450, 800, 841
BssT1I	CCWWGG	1 cut(s)	299
Bst2UI	CCWGG	1 cut(s)	141
BstAUI	TGTACA	1 cut(s)	751
BstBAI	YACGTR	1 cut(s)	59
BstC8I	GCNNGC	3 cut(s)	129, 346, 371
BstDEI	CTNAG	1 cut(s)	67
BstDSI	CCRYGG	1 cut(s)	299
BstF5I	GGATG	4 cut(s)	79, 259, 382, 769
BstFNI	CGCG	1 cut(s)	348
BstH2I	RGCGCY	1 cut(s)	117
BstHHI	GCGC	1 cut(s)	116
BstKTI	GATC	4 cut(s)	199, 453, 803, 844
BstMAI	GTCTC	1 cut(s)	904
BstMBI	GATC	4 cut(s)	196, 450, 800, 841
BstMWI	GCNNNNNNNGC	1 cut(s)	586
BstNI	CCWGG	1 cut(s)	141
BstNSI	RCATGY	2 cut(s)	589, 627
BstSCI	CCNGG	1 cut(s)	139
BstUI	CGCG	1 cut(s)	348
BstV1I	GCAGC	1 cut(s)	268
BsuRI	GGCC	4 cut(s)	78, 131, 646, 684
BtgI	CCRYGG	1 cut(s)	299
BtsCI	GGATG	4 cut(s)	79, 259, 382, 769
BtsI	GCAGTG	1 cut(s)	854
BtsIMutI	CAGTG	1 cut(s)	854
Cac8I	GCNNGC	3 cut(s)	129, 346, 371
CfoI	GCGC	1 cut(s)	116
Cfr10I	RCCGGY	1 cut(s)	794
Cfr13I	GGNCC	1 cut(s)	644
CseI	GACGC	1 cut(s)	337
Csp6I	GTAC	2 cut(s)	466, 752
CviAII	CATG	9 cut(s)	268, 286, 300, 358, 571, 586, 624, 755, 845
CviQI	GTAC	2 cut(s)	466, 752
DdeI	CTNAG	1 cut(s)	67
DpnI	GATC	4 cut(s)	198, 452, 802, 843
DpnII	GATC	4 cut(s)	196, 450, 800, 841
EaeI	YGGCCR	3 cut(s)	76, 129, 682
EciI	GGCGGA	2 cut(s)	590, 813
Eco130I	CCWWGG	1 cut(s)	299
Eco57I	CTGAAG	1 cut(s)	366
EcoRII	CCWGG	1 cut(s)	139
EcoT14I	CCWWGG	1 cut(s)	299
EcoT22I	ATGCAT	1 cut(s)	850
ErhI	CCWWGG	1 cut(s)	299
FaeI	CATG	9 cut(s)	271, 289, 303, 361, 574, 589, 627, 758, 848
FatI	CATG	9 cut(s)	267, 285, 299, 357, 570, 585, 623, 754, 844
FauNDI	CATATG	1 cut(s)	695
FbaI	TGATCA	2 cut(s)	450, 841
Fnu4HI	GCNGC	3 cut(s)	257, 682, 767
FokI	GGATG	4 cut(s)	86, 246, 389, 756
Fsp4HI	GCNGC	3 cut(s)	257, 682, 767
FspBI	CTAG	1 cut(s)	323
GlaI	GCGC	1 cut(s)	115
GluI	GCNGC	3 cut(s)	257, 682, 767
HaeII	RGCGCY	1 cut(s)	117
HaeIII	GGCC	4 cut(s)	78, 131, 646, 684
HapII	CCGG	3 cut(s)	477, 782, 795
HgaI	GACGC	1 cut(s)	337
HhaI	GCGC	1 cut(s)	116
Hin1II	CATG	9 cut(s)	271, 289, 303, 361, 574, 589, 627, 758, 848
Hin6I	GCGC	1 cut(s)	114
HinP1I	GCGC	1 cut(s)	114
HinfI	GANTC	6 cut(s)	103, 176, 304, 430, 740, 826
HpaII	CCGG	3 cut(s)	477, 782, 795
HphI	GGTGA	6 cut(s)	61, 182, 301, 416, 491, 725
Hpy166II	GTNNAC	4 cut(s)	121, 406, 716, 752
Hpy188I	TCNGA	1 cut(s)	435
Hpy188III	TCNNGA	4 cut(s)	523, 664, 804, 823
Hpy8I	GTNNAC	4 cut(s)	121, 406, 716, 752
HpyCH4IV	ACGT	1 cut(s)	58
HpyCH4V	TGCA	3 cut(s)	4, 344, 848
HpyF10VI	GCNNNNNNNGC	1 cut(s)	586
HpyF3I	CTNAG	1 cut(s)	67
HpySE526I	ACGT	1 cut(s)	58
Hsp92II	CATG	9 cut(s)	271, 289, 303, 361, 574, 589, 627, 758, 848
HspAI	GCGC	1 cut(s)	114
Ksp22I	TGATCA	2 cut(s)	450, 841
Kzo9I	GATC	4 cut(s)	196, 450, 800, 841
LmnI	GCTCC	2 cut(s)	239, 577
Lsp1109I	GCAGC	1 cut(s)	268
LweI	GCATC	5 cut(s)	268, 325, 367, 778, 857
MaeI	CTAG	1 cut(s)	323
MaeII	ACGT	1 cut(s)	58
MaeIII	GTNAC	2 cut(s)	104, 170
MalI	GATC	4 cut(s)	198, 452, 802, 843
MboI	GATC	4 cut(s)	196, 450, 800, 841
MboII	GAAGA	3 cut(s)	538, 712, 715
MhlI	GDGCHC	1 cut(s)	510
MlsI	TGGCCA	1 cut(s)	78
MluCI	AATT	3 cut(s)	5, 239, 596
MluI	ACGCGT	1 cut(s)	346
MluNI	TGGCCA	1 cut(s)	78
MlyI	GAGTC	2 cut(s)	112, 820
MmeI	TCCRAC	1 cut(s)	495
MnlI	CCTC	7 cut(s)	45, 55, 64, 104, 242, 320, 704
Mox20I	TGGCCA	1 cut(s)	78
Mph1103I	ATGCAT	1 cut(s)	850
MroXI	GAANNNNTTC	2 cut(s)	224, 720
MscI	TGGCCA	1 cut(s)	78
MseI	TTAA	1 cut(s)	396
Msp20I	TGGCCA	1 cut(s)	78
MspA1I	CMGCKG	1 cut(s)	165
MspI	CCGG	3 cut(s)	477, 782, 795
MspR9I	CCNGG	1 cut(s)	141
MvaI	CCWGG	1 cut(s)	141
MvnI	CGCG	1 cut(s)	348
MwoI	GCNNNNNNNGC	1 cut(s)	586
NcoI	CCATGG	1 cut(s)	299
NdeI	CATATG	1 cut(s)	695
NdeII	GATC	4 cut(s)	196, 450, 800, 841
NlaIII	CATG	9 cut(s)	271, 289, 303, 361, 574, 589, 627, 758, 848
NmuCI	GTSAC	2 cut(s)	104, 170
NsiI	ATGCAT	1 cut(s)	850
NspI	RCATGY	2 cut(s)	589, 627
PciI	ACATGT	1 cut(s)	623
PcsI	WCGNNNNNNNCGW	1 cut(s)	461
PdmI	GAANNNNTTC	2 cut(s)	224, 720
PfeI	GAWTC	4 cut(s)	176, 304, 430, 740
PkrI	GCNGC	3 cut(s)	258, 683, 768
PleI	GAGTC	2 cut(s)	111, 820
PpsI	GAGTC	2 cut(s)	111, 820
Ppu21I	YACGTR	1 cut(s)	59
PscI	ACATGT	1 cut(s)	623
Psp6I	CCWGG	1 cut(s)	139
PspGI	CCWGG	1 cut(s)	139
PspPI	GGNCC	1 cut(s)	644
PvuII	CAGCTG	1 cut(s)	165
RsaI	GTAC	2 cut(s)	467, 753
RsaNI	GTAC	2 cut(s)	466, 752
SaqAI	TTAA	1 cut(s)	396
SatI	GCNGC	3 cut(s)	257, 682, 767
Sau3AI	GATC	4 cut(s)	196, 450, 800, 841
Sau96I	GGNCC	1 cut(s)	644
SchI	GAGTC	2 cut(s)	112, 820
ScrFI	CCNGG	1 cut(s)	141
SduI	GDGCHC	1 cut(s)	510
SfaNI	GCATC	5 cut(s)	268, 325, 367, 778, 857
SgrAI	CRCCGGYG	1 cut(s)	794
SmlI	CTYRAG	1 cut(s)	664
SmoI	CTYRAG	1 cut(s)	664
Sse9I	AATT	3 cut(s)	5, 239, 596
SsiI	CCGC	4 cut(s)	575, 681, 767, 798
SspMI	CTAG	1 cut(s)	323
StyD4I	CCNGG	1 cut(s)	139
StyI	CCWWGG	1 cut(s)	299
TaiI	ACGT	1 cut(s)	61
TasI	AATT	3 cut(s)	5, 239, 596
TatI	WGTACW	1 cut(s)	751
TauI	GCSGC	2 cut(s)	684, 769
TfiI	GAWTC	4 cut(s)	176, 304, 430, 740
Tru1I	TTAA	1 cut(s)	396
Tru9I	TTAA	1 cut(s)	396
TscAI	CASTG	1 cut(s)	861
TseFI	GTSAC	2 cut(s)	104, 170
TseI	GCWGC	1 cut(s)	256
Tsp45I	GTSAC	2 cut(s)	104, 170
TspDTI	ATGAA	3 cut(s)	74, 256, 682
TspRI	CASTG	1 cut(s)	861
XceI	RCATGY	2 cut(s)	589, 627
XmnI	GAANNNNTTC	2 cut(s)	224, 720
XspI	CTAG	1 cut(s)	323
Zsp2I	ATGCAT	1 cut(s)	850

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.