Rh5DG068300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0010743
Physical Location & Seq
Reverse (-)
5933571 .. 5935361
1791 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG068300.1

Sequence Viewer

Length: 219 bp
ATGGATACCTGGATAATGCCTAATACCAACGACAAGAGACCGGTAACTGCTTGTTGTAATGGTCAGGCAGACCATGCAAATGATGAAACGAATCCGAATCCAAATAGCGGTTCAGCGAAAACTCTTTTGATTGGAGTATCATTAAGCACTACGTGGGCTCCATTGAAACTCCAAGGCCCTCCTCTCGATCTTGACGCGATTGATATCTCTACTCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

72

Amino Acids

7.66

Weight (kDa)

4.35

Isoelectric Point (pI)

19.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 197
AciI CCGC 1 cut(s) 108
AdeI CACNNNGTG 1 cut(s) 153
AfiI CCNNNNNNNGG 1 cut(s) 107
AgeI ACCGGT 1 cut(s) 40
AgsI TTSAA 1 cut(s) 166
AjnI CCWGG 1 cut(s) 8
AjuI GAANNNNNNNTTGG 2 cut(s) 94, 126
Alw26I GTCTC 1 cut(s) 31
AoxI GGCC 1 cut(s) 175
AsiGI ACCGGT 1 cut(s) 40
AspS9I GGNCC 1 cut(s) 176
BanII GRGCYC 1 cut(s) 160
BciT130I CCWGG 1 cut(s) 10
BcoDI GTCTC 1 cut(s) 31
BfaI CTAG 1 cut(s) 217
Bme1390I CCNGG 1 cut(s) 10
BmgT120I GGNCC 1 cut(s) 176
BmiI GGNNCC 1 cut(s) 159
BmrFI CCNGG 1 cut(s) 10
BsaAI YACGTR 1 cut(s) 153
BsaBI GATNNNNATC 1 cut(s) 203
BsaI GGTCTC 1 cut(s) 31
BsaJI CCNNGG 1 cut(s) 172
BsaWI WCCGGW 1 cut(s) 40
BsaXI ACNNNNNCTCC 2 cut(s) 142, 172
Bsc4I CCNNNNNNNGG 1 cut(s) 107
Bse118I RCCGGY 1 cut(s) 40
Bse8I GATNNNNATC 1 cut(s) 203
BseBI CCWGG 1 cut(s) 10
BseDI CCNNGG 1 cut(s) 172
BseJI GATNNNNATC 1 cut(s) 203
BseLI CCNNNNNNNGG 1 cut(s) 107
BseRI GAGGAG 1 cut(s) 171
Bsh1236I CGCG 1 cut(s) 197
BshFI GGCC 1 cut(s) 177
BshTI ACCGGT 1 cut(s) 40
BsiSI CCGG 1 cut(s) 41
BslI CCNNNNNNNGG 1 cut(s) 107
BsmAI GTCTC 1 cut(s) 31
BsnI GGCC 1 cut(s) 177
Bso31I GGTCTC 1 cut(s) 31
Bsp1286I GDGCHC 1 cut(s) 160
Bsp143I GATC 1 cut(s) 187
BspACI CCGC 1 cut(s) 108
BspANI GGCC 1 cut(s) 177
BspFNI CGCG 1 cut(s) 197
BspLI GGNNCC 1 cut(s) 159
BspTNI GGTCTC 1 cut(s) 31
BsrFI RCCGGY 1 cut(s) 40
BssAI RCCGGY 1 cut(s) 40
BssECI CCNNGG 1 cut(s) 172
BssMI GATC 1 cut(s) 187
BssT1I CCWWGG 1 cut(s) 172
Bst2UI CCWGG 1 cut(s) 10
BstAPI GCANNNNNTGC 1 cut(s) 74
BstBAI YACGTR 1 cut(s) 153
BstFNI CGCG 1 cut(s) 197
BstKTI GATC 1 cut(s) 190
BstMAI GTCTC 1 cut(s) 31
BstMBI GATC 1 cut(s) 187
BstMWI GCNNNNNNNGC 1 cut(s) 74
BstNI CCWGG 1 cut(s) 10
BstSCI CCNGG 1 cut(s) 8
BstUI CGCG 1 cut(s) 197
BsuRI GGCC 1 cut(s) 177
Cfr10I RCCGGY 1 cut(s) 40
Cfr13I GGNCC 1 cut(s) 176
CseI GACGC 1 cut(s) 203
CspAI ACCGGT 1 cut(s) 40
CviAII CATG 1 cut(s) 74
CviJI RGCY 2 cut(s) 158, 177
CviKI_1 RGCY 2 cut(s) 158, 177
DpnI GATC 1 cut(s) 189
DpnII GATC 1 cut(s) 187
DraIII CACNNNGTG 1 cut(s) 153
Eco130I CCWWGG 1 cut(s) 172
Eco24I GRGCYC 1 cut(s) 160
Eco31I GGTCTC 1 cut(s) 31
Eco32I GATATC 1 cut(s) 205
EcoO109I RGGNCCY 1 cut(s) 176
EcoRII CCWGG 1 cut(s) 8
EcoRV GATATC 1 cut(s) 205
EcoT14I CCWWGG 1 cut(s) 172
EcoT38I GRGCYC 1 cut(s) 160
ErhI CCWWGG 1 cut(s) 172
FaeI CATG 1 cut(s) 77
FaiI YATR 1 cut(s) 75
FatI CATG 1 cut(s) 73
FriOI GRGCYC 1 cut(s) 160
FspBI CTAG 1 cut(s) 217
HaeIII GGCC 1 cut(s) 177
HapII CCGG 1 cut(s) 41
HgaI GACGC 1 cut(s) 203
Hin1II CATG 1 cut(s) 77
HinfI GANTC 2 cut(s) 91, 97
HpaII CCGG 1 cut(s) 41
Hpy188I TCNGA 1 cut(s) 96
Hpy188III TCNNGA 2 cut(s) 185, 191
HpyCH4IV ACGT 1 cut(s) 152
HpyCH4V TGCA 1 cut(s) 77
HpyF10VI GCNNNNNNNGC 1 cut(s) 74
HpySE526I ACGT 1 cut(s) 152
Hsp92II CATG 1 cut(s) 77
Kzo9I GATC 1 cut(s) 187
LmnI GCTCC 1 cut(s) 163
LpnPI CCDG 3 cut(s) 22, 50, 54
MaeI CTAG 1 cut(s) 217
MaeII ACGT 1 cut(s) 152
MaeIII GTNAC 1 cut(s) 43
MalI GATC 1 cut(s) 189
MboI GATC 1 cut(s) 187
MhlI GDGCHC 1 cut(s) 160
MnlI CCTC 2 cut(s) 189, 192
MseI TTAA 1 cut(s) 143
MslI CAYNNNNRTG 1 cut(s) 78
MspI CCGG 1 cut(s) 41
MspR9I CCNGG 1 cut(s) 10
MvaI CCWGG 1 cut(s) 10
MvnI CGCG 1 cut(s) 197
MwoI GCNNNNNNNGC 1 cut(s) 74
NdeII GATC 1 cut(s) 187
NlaIII CATG 1 cut(s) 77
NlaIV GGNNCC 1 cut(s) 159
PfeI GAWTC 2 cut(s) 91, 97
PinAI ACCGGT 1 cut(s) 40
Ppu21I YACGTR 1 cut(s) 153
Psp6I CCWGG 1 cut(s) 8
PspGI CCWGG 1 cut(s) 8
PspN4I GGNNCC 1 cut(s) 159
PspPI GGNCC 1 cut(s) 176
RseI CAYNNNNRTG 1 cut(s) 78
SaqAI TTAA 1 cut(s) 143
Sau3AI GATC 1 cut(s) 187
Sau96I GGNCC 1 cut(s) 176
ScrFI CCNGG 1 cut(s) 10
SduI GDGCHC 1 cut(s) 160
SetI ASST 2 cut(s) 11, 155
SmiMI CAYNNNNRTG 1 cut(s) 78
SsiI CCGC 1 cut(s) 108
SspMI CTAG 1 cut(s) 217
StyD4I CCNGG 1 cut(s) 8
StyI CCWWGG 1 cut(s) 172
TaiI ACGT 1 cut(s) 155
TaqI TCGA 1 cut(s) 186
TfiI GAWTC 2 cut(s) 91, 97
Tru1I TTAA 1 cut(s) 143
Tru9I TTAA 1 cut(s) 143
TspDTI ATGAA 1 cut(s) 99
XspI CTAG 1 cut(s) 217
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.