Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0010743

Physical Location & Seq

Genomic Coordinates Reverse (-)

66994154 .. 66996724

Gene Structure 2571 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG413500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1182 bp

ATGTTAGATTGTGTGTATCCTTCTCCATGTAAGACTCTTAACTCTGTGTCCTTCCCAACAACCAGCATCGTAAAGCAATTAGATATGTATGGGGAATTAAAGGGGCATAACGATTATGTAAGCTCCATAGAATTCAACTCCATTGGTGACCTCCTTGTGTCAGGGTCTTATGATAAACAAGTCATATTTTGGAACTGGGAAACTAAAACTAGAAGACTCTCTTATGATTCTGGACACTTGAAGATGGTATATCAGACAAAGATAATGCCTGTCACGAATGATCGGAGAATAGTAACCGCTTGTGCAGTTGGTCAGGTGAGGCTAGGTGAGGTCTTAGAGGATGGCCAAGTACATACAAAAAGGTTAGGGAGTCACAGAGGCGCTGTTCACAAGCTGGCTGTAGAGCCTGGAAACCCCAACATACTTTACAGCTGTGGTGACGATTCTTTTATTCAACACTTTGATCTGCGAAGCAATACTGCTACGAAGCTATTCAGTTGCTCCAAATTGATAAGAGGAGAGCAGCATCCTTTCACGTTAGATTTGTATGACATGGTGATTGACCCATGGAATCCAAACTACTTTTGTCTAGGAGGCAATGATGCATATGCACGCGTCTATGACATGAGAAAATGCTGGCAGGATGCTTCAGGTGGTTTAGTTAAACCTGTGAACACATTTCGCCCTGCTCACCTGATTCAGACAACCCATTTTATGATCACGGGGTTGGCGTACTCCAACTCCGGTGAGCTACTTGTGAGTTATAGTGATGAGCACATTTATCTGTTCCAGAAGAATATGGGGTTGGGTCATTCCCCATCGTTCCTACCTAAAGACATGGCGGAGCTTGACAAGCCAGAACAATTCATTGGTCATAGAAATATAAACACATGTAGAGTGAGTTTCTTTGGGCCAAATGATGAGTATGTCTTGAGTGGGAGTTATTGCGGCCATATTTTCATATGGAAGAATGGAGGTGAACTCATTCGTGTTATGATGGGCGATTCTCTCGGTGTACATGACATTCAGCCGCATCCACATAATCCGGTCATTGCCACCGGCGGATCGGGAAACAATCTAAAGCTCTGGACTCCTATGGCAGATGATCATGCATCTCCACTGCCTGACAACATTGCACAGGTGCTTTCTCAATCTCTCGCTGTCTCGCAGAGTAAAAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005739 GO:0005829 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0019538 GO:0031461 GO:0031974 GO:0031981 GO:0032991 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043687 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:0080008 GO:1901564 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

393

Amino Acids

43.98

Weight (kDa)

6.48

Isoelectric Point (pI)

43.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_WDR5	PF25175	28 - 106	2e-09	WDR5 beta-propeller domain
WD40	PF00400	31 - 65	5.2e-07	WD domain, G-beta repeat
Beta-prop_WDR3_1st	PF25173	32 - 102	3.1e-08	WDR3 first beta-propeller domain
WD40_CDC20-Fz	PF24807	32 - 165	3e-08	CDC20/Fizzy WD40 domain
WDR55	PF24796	32 - 160	3.6e-07	WDR55
Beta-prop_THOC3	PF25174	36 - 108	3.1e-07	THOC3 beta-propeller domain
WD40_Prp19	PF24814	41 - 211	2.4e-08	Prp19 WD40 domain
Beta-prop_THOC3	PF25174	94 - 167	2.9e-06	THOC3 beta-propeller domain
Beta-prop_WDR5	PF25175	288 - 363	6.9e-06	WDR5 beta-propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010743)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45620 AT3G45620
fragaria_vesca	FvH4_3g33730 FvH4_3g34190
rosa_chinensis	RchiOBHm_Chr5g0061271
rosa_laevigata	RLG00000031642 RLG00000035447 RLG00000035448
rosa_multiflora	Rmu_sc0007612.1_g000043
rosa_roxburghii	Rroxscaffold_1G00019440
rosa_rugosa	Rorug04G0441700 Rorug05G0339200
rosa_samantha	Rh5AG071700 Rh5AG400400 Rh5BG068100 Rh5BG413500 Rh5CG438000 Rh5DG068300 Rh5DG427600
rosa_wichuraiana	Rw5G037730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	615
AciI	CCGC	5 cut(s)	297, 842, 948, 1031, 1062
AclWI	GGATC	1 cut(s)	1072
AcoI	YGGCCR	2 cut(s)	343, 949
AcsI	RAATTY	1 cut(s)	131
AcuI	CTGAAG	1 cut(s)	633
AfaI	GTAC	3 cut(s)	351, 734, 1017
AflIII	ACRYGT	2 cut(s)	613, 890
AgsI	TTSAA	3 cut(s)	136, 241, 455
AjnI	CCWGG	1 cut(s)	406
AjuI	GAANNNNNNNTTGG	4 cut(s)	788, 820, 852, 884
AluBI	AGCT	7 cut(s)	123, 394, 432, 490, 751, 847, 1084
AluI	AGCT	7 cut(s)	123, 394, 432, 490, 751, 847, 1084
Alw21I	GWGCWC	1 cut(s)	777
Alw26I	GTCTC	1 cut(s)	1168
AlwI	GGATC	1 cut(s)	1072
AoxI	GGCC	3 cut(s)	343, 911, 949
ApeKI	GCWGC	1 cut(s)	523
ApoI	RAATTY	1 cut(s)	131
Asp700I	GAANNNNTTC	2 cut(s)	491, 984
AspLEI	GCGC	1 cut(s)	383
AspS9I	GGNCC	1 cut(s)	911
AsuHPI	GGTGA	8 cut(s)	158, 328, 338, 449, 568, 683, 758, 989
BalI	TGGCCA	1 cut(s)	345
BbsI	GAAGAC	1 cut(s)	220
Bbv12I	GWGCWC	1 cut(s)	777
BbvI	GCAGC	1 cut(s)	535
BccI	CCATC	4 cut(s)	238, 335, 826, 991
BciT130I	CCWGG	1 cut(s)	408
BciVI	GTATCC	1 cut(s)	27
BclI	TGATCA	2 cut(s)	717, 1105
BcoDI	GTCTC	1 cut(s)	1168
BfaI	CTAG	3 cut(s)	210, 323, 590
BfmI	CTRYAG	1 cut(s)	399
BfoI	RGCGCY	1 cut(s)	384
BfuI	GTATCC	1 cut(s)	27
BisI	GCNGC	3 cut(s)	524, 949, 1031
BlsI	GCNGC	3 cut(s)	525, 950, 1032
Bme1390I	CCNGG	1 cut(s)	408
BmgT120I	GGNCC	1 cut(s)	911
BmrFI	CCNGG	1 cut(s)	408
BmrI	ACTGGG	1 cut(s)	205
BmsI	GCATC	6 cut(s)	75, 535, 592, 634, 1042, 1121
BmuI	ACTGGG	1 cut(s)	205
BpiI	GAAGAC	1 cut(s)	220
BplI	GAGNNNNNCTC	2 cut(s)	966, 998
BpuEI	CTTGAG	1 cut(s)	952
BsaJI	CCNNGG	1 cut(s)	566
BsaWI	WCCGGW	2 cut(s)	743, 1045
BsaXI	ACNNNNNCTCC	2 cut(s)	725, 755
Bse118I	RCCGGY	1 cut(s)	1058
Bse1I	ACTGG	1 cut(s)	200
Bse3DI	GCAATG	3 cut(s)	604, 1050, 1131
BseBI	CCWGG	1 cut(s)	408
BseDI	CCNNGG	1 cut(s)	566
BseGI	GGATG	4 cut(s)	346, 526, 649, 1033
BseMI	GCAATG	3 cut(s)	604, 1050, 1131
BseNI	ACTGG	1 cut(s)	200
BseRI	GAGGAG	1 cut(s)	531
BseXI	GCAGC	1 cut(s)	535
BsgI	GTGCAG	1 cut(s)	324
Bsh1236I	CGCG	1 cut(s)	615
BshFI	GGCC	3 cut(s)	345, 913, 951
BsiHKAI	GWGCWC	1 cut(s)	777
BsiSI	CCGG	3 cut(s)	744, 1046, 1059
BsmAI	GTCTC	1 cut(s)	1168
BsnI	GGCC	3 cut(s)	345, 913, 951
Bsp1286I	GDGCHC	1 cut(s)	777
Bsp1407I	TGTACA	1 cut(s)	1015
Bsp143I	GATC	5 cut(s)	280, 463, 717, 1064, 1105
Bsp19I	CCATGG	1 cut(s)	566
BspACI	CCGC	5 cut(s)	297, 842, 948, 1031, 1062
BspANI	GGCC	3 cut(s)	345, 913, 951
BspFNI	CGCG	1 cut(s)	615
BspPI	GGATC	1 cut(s)	1072
BsrDI	GCAATG	3 cut(s)	604, 1050, 1131
BsrFI	RCCGGY	1 cut(s)	1058
BsrGI	TGTACA	1 cut(s)	1015
BsrI	ACTGG	1 cut(s)	200
BssAI	RCCGGY	1 cut(s)	1058
BssECI	CCNNGG	1 cut(s)	566
BssMI	GATC	5 cut(s)	280, 463, 717, 1064, 1105
BssT1I	CCWWGG	1 cut(s)	566
Bst2UI	CCWGG	1 cut(s)	408
BstAUI	TGTACA	1 cut(s)	1015
BstC8I	GCNNGC	3 cut(s)	396, 613, 638
BstDEI	CTNAG	1 cut(s)	334
BstDSI	CCRYGG	1 cut(s)	566
BstEII	GGTNACC	1 cut(s)	146
BstF5I	GGATG	4 cut(s)	346, 526, 649, 1033
BstFNI	CGCG	1 cut(s)	615
BstH2I	RGCGCY	1 cut(s)	384
BstHHI	GCGC	1 cut(s)	383
BstKTI	GATC	5 cut(s)	283, 466, 720, 1067, 1108
BstMAI	GTCTC	1 cut(s)	1168
BstMBI	GATC	5 cut(s)	280, 463, 717, 1064, 1105
BstMWI	GCNNNNNNNGC	1 cut(s)	853
BstNI	CCWGG	1 cut(s)	408
BstNSI	RCATGY	1 cut(s)	894
BstPI	GGTNACC	1 cut(s)	146
BstSCI	CCNGG	1 cut(s)	406
BstSFI	CTRYAG	1 cut(s)	399
BstUI	CGCG	1 cut(s)	615
BstV1I	GCAGC	1 cut(s)	535
BstV2I	GAAGAC	1 cut(s)	220
BsuI	GTATCC	1 cut(s)	27
BsuRI	GGCC	3 cut(s)	345, 913, 951
BtgI	CCRYGG	1 cut(s)	566
BtsCI	GGATG	4 cut(s)	346, 526, 649, 1033
BtsI	GCAGTG	1 cut(s)	1118
BtsIMutI	CAGTG	1 cut(s)	1118
Cac8I	GCNNGC	3 cut(s)	396, 613, 638
CfoI	GCGC	1 cut(s)	383
Cfr10I	RCCGGY	1 cut(s)	1058
Cfr13I	GGNCC	1 cut(s)	911
CseI	GACGC	1 cut(s)	604
Csp6I	GTAC	3 cut(s)	350, 733, 1016
CviAII	CATG	8 cut(s)	27, 553, 567, 625, 838, 891, 1019, 1109
CviQI	GTAC	3 cut(s)	350, 733, 1016
DdeI	CTNAG	1 cut(s)	334
DpnI	GATC	5 cut(s)	282, 465, 719, 1066, 1107
DpnII	GATC	5 cut(s)	280, 463, 717, 1064, 1105
EaeI	YGGCCR	2 cut(s)	343, 949
EciI	GGCGGA	2 cut(s)	857, 1077
Eco130I	CCWWGG	1 cut(s)	566
Eco57I	CTGAAG	1 cut(s)	633
Eco91I	GGTNACC	1 cut(s)	146
EcoO65I	GGTNACC	1 cut(s)	146
EcoRI	GAATTC	1 cut(s)	131
EcoRII	CCWGG	1 cut(s)	406
EcoT14I	CCWWGG	1 cut(s)	566
EcoT22I	ATGCAT	2 cut(s)	607, 1114
ErhI	CCWWGG	1 cut(s)	566
FaeI	CATG	8 cut(s)	30, 556, 570, 628, 841, 894, 1022, 1112
FalI	AAGNNNNNCTT	2 cut(s)	205, 237
FatI	CATG	8 cut(s)	26, 552, 566, 624, 837, 890, 1018, 1108
FauNDI	CATATG	2 cut(s)	607, 962
FbaI	TGATCA	2 cut(s)	717, 1105
Fnu4HI	GCNGC	3 cut(s)	524, 949, 1031
FokI	GGATG	4 cut(s)	353, 513, 656, 1020
Fsp4HI	GCNGC	3 cut(s)	524, 949, 1031
FspBI	CTAG	3 cut(s)	210, 323, 590
GlaI	GCGC	1 cut(s)	382
GluI	GCNGC	3 cut(s)	524, 949, 1031
HaeII	RGCGCY	1 cut(s)	384
HaeIII	GGCC	3 cut(s)	345, 913, 951
HapII	CCGG	3 cut(s)	744, 1046, 1059
HgaI	GACGC	1 cut(s)	604
HhaI	GCGC	1 cut(s)	383
Hin1II	CATG	8 cut(s)	30, 556, 570, 628, 841, 894, 1022, 1112
Hin6I	GCGC	1 cut(s)	381
HinP1I	GCGC	1 cut(s)	381
HinfI	GANTC	9 cut(s)	34, 216, 227, 370, 443, 571, 697, 1004, 1090
HpaII	CCGG	3 cut(s)	744, 1046, 1059
HphI	GGTGA	8 cut(s)	158, 328, 338, 449, 568, 683, 758, 989
Hpy166II	GTNNAC	4 cut(s)	388, 673, 980, 1016
Hpy188I	TCNGA	3 cut(s)	255, 285, 702
Hpy188III	TCNNGA	6 cut(s)	231, 274, 790, 931, 1068, 1087
Hpy8I	GTNNAC	4 cut(s)	388, 673, 980, 1016
HpyAV	CCTTC	2 cut(s)	30, 61
HpyCH4IV	ACGT	1 cut(s)	536
HpyCH4V	TGCA	5 cut(s)	305, 605, 611, 1112, 1136
HpyF10VI	GCNNNNNNNGC	1 cut(s)	853
HpyF3I	CTNAG	1 cut(s)	334
HpySE526I	ACGT	1 cut(s)	536
Hsp92II	CATG	8 cut(s)	30, 556, 570, 628, 841, 894, 1022, 1112
HspAI	GCGC	1 cut(s)	381
Ksp22I	TGATCA	2 cut(s)	717, 1105
Kzo9I	GATC	5 cut(s)	280, 463, 717, 1064, 1105
LmnI	GCTCC	3 cut(s)	128, 506, 844
Lsp1109I	GCAGC	1 cut(s)	535
LweI	GCATC	6 cut(s)	75, 535, 592, 634, 1042, 1121
MaeI	CTAG	3 cut(s)	210, 323, 590
MaeII	ACGT	1 cut(s)	536
MaeIII	GTNAC	5 cut(s)	146, 271, 292, 371, 437
MalI	GATC	5 cut(s)	282, 465, 719, 1066, 1107
MboI	GATC	5 cut(s)	280, 463, 717, 1064, 1105
MboII	GAAGA	4 cut(s)	225, 253, 805, 979
MhlI	GDGCHC	1 cut(s)	777
MlsI	TGGCCA	1 cut(s)	345
MluCI	AATT	5 cut(s)	77, 95, 131, 506, 863
MluI	ACGCGT	1 cut(s)	613
MluNI	TGGCCA	1 cut(s)	345
MlyI	GAGTC	4 cut(s)	28, 210, 379, 1084
MmeI	TCCRAC	1 cut(s)	762
MnlI	CCTC	8 cut(s)	161, 312, 322, 331, 371, 509, 587, 968
Mox20I	TGGCCA	1 cut(s)	345
Mph1103I	ATGCAT	2 cut(s)	607, 1114
MroXI	GAANNNNTTC	2 cut(s)	491, 984
MscI	TGGCCA	1 cut(s)	345
MseI	TTAA	3 cut(s)	39, 98, 663
Msp20I	TGGCCA	1 cut(s)	345
MspA1I	CMGCKG	1 cut(s)	432
MspI	CCGG	3 cut(s)	744, 1046, 1059
MspR9I	CCNGG	1 cut(s)	408
MvaI	CCWGG	1 cut(s)	408
MvnI	CGCG	1 cut(s)	615
MwoI	GCNNNNNNNGC	1 cut(s)	853
NcoI	CCATGG	1 cut(s)	566
NdeI	CATATG	2 cut(s)	607, 962
NdeII	GATC	5 cut(s)	280, 463, 717, 1064, 1105
NlaIII	CATG	8 cut(s)	30, 556, 570, 628, 841, 894, 1022, 1112
NmuCI	GTSAC	4 cut(s)	146, 271, 371, 437
NsiI	ATGCAT	2 cut(s)	607, 1114
NspI	RCATGY	1 cut(s)	894
PciI	ACATGT	1 cut(s)	890
PcsI	WCGNNNNNNNCGW	1 cut(s)	728
PdmI	GAANNNNTTC	2 cut(s)	491, 984
PfeI	GAWTC	5 cut(s)	227, 443, 571, 697, 1004
PkrI	GCNGC	3 cut(s)	525, 950, 1032
PleI	GAGTC	4 cut(s)	28, 210, 378, 1084
PpsI	GAGTC	4 cut(s)	28, 210, 378, 1084
PscI	ACATGT	1 cut(s)	890
Psp6I	CCWGG	1 cut(s)	406
PspEI	GGTNACC	1 cut(s)	146
PspGI	CCWGG	1 cut(s)	406
PspPI	GGNCC	1 cut(s)	911
PvuII	CAGCTG	1 cut(s)	432
RsaI	GTAC	3 cut(s)	351, 734, 1017
RsaNI	GTAC	3 cut(s)	350, 733, 1016
SaqAI	TTAA	3 cut(s)	39, 98, 663
SatI	GCNGC	3 cut(s)	524, 949, 1031
Sau3AI	GATC	5 cut(s)	280, 463, 717, 1064, 1105
Sau96I	GGNCC	1 cut(s)	911
SchI	GAGTC	4 cut(s)	28, 210, 379, 1084
ScrFI	CCNGG	1 cut(s)	408
SduI	GDGCHC	1 cut(s)	777
SfaNI	GCATC	6 cut(s)	75, 535, 592, 634, 1042, 1121
SfcI	CTRYAG	1 cut(s)	399
SgrAI	CRCCGGYG	1 cut(s)	1058
SmlI	CTYRAG	1 cut(s)	931
SmoI	CTYRAG	1 cut(s)	931
Sse9I	AATT	5 cut(s)	77, 95, 131, 506, 863
SsiI	CCGC	5 cut(s)	297, 842, 948, 1031, 1062
SspMI	CTAG	3 cut(s)	210, 323, 590
StyD4I	CCNGG	1 cut(s)	406
StyI	CCWWGG	1 cut(s)	566
TaiI	ACGT	1 cut(s)	539
TasI	AATT	5 cut(s)	77, 95, 131, 506, 863
TatI	WGTACW	2 cut(s)	349, 1015
TauI	GCSGC	2 cut(s)	951, 1033
TfiI	GAWTC	5 cut(s)	227, 443, 571, 697, 1004
Tru1I	TTAA	3 cut(s)	39, 98, 663
Tru9I	TTAA	3 cut(s)	39, 98, 663
TscAI	CASTG	1 cut(s)	1125
TseFI	GTSAC	4 cut(s)	146, 271, 371, 437
TseI	GCWGC	1 cut(s)	523
Tsp45I	GTSAC	4 cut(s)	146, 271, 371, 437
TspDTI	ATGAA	2 cut(s)	856, 949
TspRI	CASTG	1 cut(s)	1125
XapI	RAATTY	1 cut(s)	131
XceI	RCATGY	1 cut(s)	894
XmnI	GAANNNNTTC	2 cut(s)	491, 984
XspI	CTAG	3 cut(s)	210, 323, 590
Zsp2I	ATGCAT	2 cut(s)	607, 1114

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.