Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0010743

Physical Location & Seq

Genomic Coordinates Reverse (-)

67037455 .. 67037865

Gene Structure 411 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000035447

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGAGTGTCTTGAGTGGGAGTTATTGCGGCCATATTTTCATATGGAAGAAGAATGGAGGTGAACTTATTCGTGTTATGATAGGCGATTCTGTAGGTGTACATGACATTCAGCCGCATCCACATGATCCGGTCATTGCCACCAGCGGATCGGGAAACAATCTAAAGTTCTGGCTCCTATGGCAAATGATCATGCATCTCCACTGCCTGACAACATTACACAGGTGTTTTCTCAGTCTCTCGCTGTCTAGCAGAATTATGGAGTCTAATAGTCGAGCTAGAAGTGACGATTATTTTCAGATGCTCACGTGGAGTTCCTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005739 GO:0005829 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0019538 GO:0031461 GO:0031974 GO:0031981 GO:0032991 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043687 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:0080008 GO:1901564 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

107

Amino Acids

12.02

Weight (kDa)

7.83

Isoelectric Point (pI)

44.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010743)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45620 AT3G45620
fragaria_vesca	FvH4_3g33730 FvH4_3g34190
rosa_chinensis	RchiOBHm_Chr5g0061271
rosa_laevigata	RLG00000031642 RLG00000035447 RLG00000035448
rosa_multiflora	Rmu_sc0007612.1_g000043
rosa_roxburghii	Rroxscaffold_1G00019440
rosa_rugosa	Rorug04G0441700 Rorug05G0339200
rosa_samantha	Rh5AG071700 Rh5AG400400 Rh5BG068100 Rh5BG413500 Rh5CG438000 Rh5DG068300 Rh5DG427600
rosa_wichuraiana	Rw5G037730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	27, 113, 144
AclWI	GGATC	2 cut(s)	119, 154
AcoI	YGGCCR	1 cut(s)	28
AcvI	CACGTG	1 cut(s)	306
AfaI	GTAC	1 cut(s)	99
AluBI	AGCT	1 cut(s)	275
AluI	AGCT	1 cut(s)	275
Alw26I	GTCTC	1 cut(s)	239
AlwI	GGATC	2 cut(s)	119, 154
AoxI	GGCC	1 cut(s)	28
Asp700I	GAANNNNTTC	1 cut(s)	66
AsuHPI	GGTGA	1 cut(s)	71
BbrPI	CACGTG	1 cut(s)	306
BclI	TGATCA	1 cut(s)	186
BcoDI	GTCTC	1 cut(s)	239
BfaI	CTAG	2 cut(s)	246, 276
BfmI	CTRYAG	1 cut(s)	90
BisI	GCNGC	2 cut(s)	28, 113
BlsI	GCNGC	2 cut(s)	29, 114
BmiI	GGNNCC	1 cut(s)	173
BmsI	GCATC	3 cut(s)	124, 202, 288
BpuEI	CTTGAG	1 cut(s)	31
BsaAI	YACGTR	1 cut(s)	306
BsaWI	WCCGGW	1 cut(s)	127
Bse3DI	GCAATG	1 cut(s)	132
BseGI	GGATG	1 cut(s)	115
BseMI	GCAATG	1 cut(s)	132
BseMII	CTCAG	1 cut(s)	244
BshFI	GGCC	1 cut(s)	30
BsiSI	CCGG	1 cut(s)	128
BsmAI	GTCTC	1 cut(s)	239
BsnI	GGCC	1 cut(s)	30
Bsp1407I	TGTACA	1 cut(s)	97
Bsp143I	GATC	3 cut(s)	124, 146, 186
BspACI	CCGC	3 cut(s)	27, 113, 144
BspANI	GGCC	1 cut(s)	30
BspCNI	CTCAG	1 cut(s)	243
BspLI	GGNNCC	1 cut(s)	173
BspPI	GGATC	2 cut(s)	119, 154
BsrDI	GCAATG	1 cut(s)	132
BsrGI	TGTACA	1 cut(s)	97
BssMI	GATC	3 cut(s)	124, 146, 186
BstAUI	TGTACA	1 cut(s)	97
BstBAI	YACGTR	1 cut(s)	306
BstDEI	CTNAG	1 cut(s)	230
BstF5I	GGATG	1 cut(s)	115
BstKTI	GATC	3 cut(s)	127, 149, 189
BstMAI	GTCTC	1 cut(s)	239
BstMBI	GATC	3 cut(s)	124, 146, 186
BstMWI	GCNNNNNNNGC	1 cut(s)	178
BstSFI	CTRYAG	1 cut(s)	90
BsuRI	GGCC	1 cut(s)	30
BtsCI	GGATG	1 cut(s)	115
BtsI	GCAGTG	1 cut(s)	199
BtsIMutI	CAGTG	1 cut(s)	199
Csp6I	GTAC	1 cut(s)	98
CviAII	CATG	3 cut(s)	101, 122, 190
CviJI	RGCY	4 cut(s)	30, 112, 172, 275
CviKI_1	RGCY	4 cut(s)	30, 112, 172, 275
CviQI	GTAC	1 cut(s)	98
DdeI	CTNAG	1 cut(s)	230
DpnI	GATC	3 cut(s)	126, 148, 188
DpnII	GATC	3 cut(s)	124, 146, 186
EaeI	YGGCCR	1 cut(s)	28
Eco72I	CACGTG	1 cut(s)	306
EcoT22I	ATGCAT	1 cut(s)	195
FaeI	CATG	3 cut(s)	104, 125, 193
FaiI	YATR	9 cut(s)	33, 41, 43, 77, 102, 123, 178, 191, 257
FatI	CATG	3 cut(s)	100, 121, 189
FauNDI	CATATG	1 cut(s)	41
FbaI	TGATCA	1 cut(s)	186
Fnu4HI	GCNGC	2 cut(s)	28, 113
FokI	GGATG	1 cut(s)	102
Fsp4HI	GCNGC	2 cut(s)	28, 113
FspBI	CTAG	2 cut(s)	246, 276
GluI	GCNGC	2 cut(s)	28, 113
HaeIII	GGCC	1 cut(s)	30
HapII	CCGG	1 cut(s)	128
Hin1II	CATG	3 cut(s)	104, 125, 193
HinfI	GANTC	2 cut(s)	86, 260
HpaII	CCGG	1 cut(s)	128
HphI	GGTGA	1 cut(s)	71
Hpy166II	GTNNAC	2 cut(s)	62, 98
Hpy188I	TCNGA	1 cut(s)	297
Hpy188III	TCNNGA	3 cut(s)	10, 150, 318
Hpy8I	GTNNAC	2 cut(s)	62, 98
HpyCH4IV	ACGT	1 cut(s)	305
HpyCH4V	TGCA	1 cut(s)	193
HpyF10VI	GCNNNNNNNGC	1 cut(s)	178
HpyF3I	CTNAG	1 cut(s)	230
HpySE526I	ACGT	1 cut(s)	305
Hsp92II	CATG	3 cut(s)	104, 125, 193
Ksp22I	TGATCA	1 cut(s)	186
Kzo9I	GATC	3 cut(s)	124, 146, 186
LmnI	GCTCC	1 cut(s)	177
LpnPI	CCDG	5 cut(s)	141, 154, 154, 205, 218
LweI	GCATC	3 cut(s)	124, 202, 288
MaeI	CTAG	2 cut(s)	246, 276
MaeII	ACGT	1 cut(s)	305
MaeIII	GTNAC	1 cut(s)	281
MalI	GATC	3 cut(s)	126, 148, 188
MboI	GATC	3 cut(s)	124, 146, 186
MboII	GAAGA	2 cut(s)	58, 61
MluCI	AATT	1 cut(s)	252
MlyI	GAGTC	1 cut(s)	269
MnlI	CCTC	1 cut(s)	50
Mph1103I	ATGCAT	1 cut(s)	195
MroXI	GAANNNNTTC	1 cut(s)	66
MslI	CAYNNNNRTG	1 cut(s)	120
MspA1I	CMGCKG	1 cut(s)	144
MspI	CCGG	1 cut(s)	128
MwoI	GCNNNNNNNGC	1 cut(s)	178
NdeI	CATATG	1 cut(s)	41
NdeII	GATC	3 cut(s)	124, 146, 186
NlaIII	CATG	3 cut(s)	104, 125, 193
NlaIV	GGNNCC	1 cut(s)	173
NmuCI	GTSAC	1 cut(s)	281
NsiI	ATGCAT	1 cut(s)	195
PdmI	GAANNNNTTC	1 cut(s)	66
PfeI	GAWTC	1 cut(s)	86
PkrI	GCNGC	2 cut(s)	29, 114
PleI	GAGTC	1 cut(s)	268
PmaCI	CACGTG	1 cut(s)	306
PmlI	CACGTG	1 cut(s)	306
PpsI	GAGTC	1 cut(s)	268
Ppu21I	YACGTR	1 cut(s)	306
PspCI	CACGTG	1 cut(s)	306
PspN4I	GGNNCC	1 cut(s)	173
RsaI	GTAC	1 cut(s)	99
RsaNI	GTAC	1 cut(s)	98
RseI	CAYNNNNRTG	1 cut(s)	120
SatI	GCNGC	2 cut(s)	28, 113
Sau3AI	GATC	3 cut(s)	124, 146, 186
SchI	GAGTC	1 cut(s)	269
SetI	ASST	5 cut(s)	61, 97, 224, 277, 308
SfaNI	GCATC	3 cut(s)	124, 202, 288
SfcI	CTRYAG	1 cut(s)	90
SmiMI	CAYNNNNRTG	1 cut(s)	120
SmlI	CTYRAG	1 cut(s)	10
SmoI	CTYRAG	1 cut(s)	10
Sse9I	AATT	1 cut(s)	252
SsiI	CCGC	3 cut(s)	27, 113, 144
SspMI	CTAG	2 cut(s)	246, 276
TaiI	ACGT	1 cut(s)	308
TaqI	TCGA	1 cut(s)	271
TasI	AATT	1 cut(s)	252
TatI	WGTACW	1 cut(s)	97
TauI	GCSGC	2 cut(s)	30, 115
TfiI	GAWTC	1 cut(s)	86
TscAI	CASTG	1 cut(s)	206
TseFI	GTSAC	1 cut(s)	281
Tsp45I	GTSAC	1 cut(s)	281
TspDTI	ATGAA	1 cut(s)	28
TspRI	CASTG	1 cut(s)	206
XmnI	GAANNNNTTC	1 cut(s)	66
XspI	CTAG	2 cut(s)	246, 276
Zsp2I	ATGCAT	1 cut(s)	195

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.