Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0010743

Physical Location & Seq

Genomic Coordinates Reverse (-)

67037952 .. 67038730

Gene Structure 779 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000035448

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGGCCATACATATCAATTCTAACTCGGAAGGACTCAAGGTGAGGCTAGGTGAGGTCTTGGGATGGCCAAGTTCATACAAAAAGGATGGGGAGTCACAGAGGCGCTGTTCACAAGCTGGCTGTAGAGCCTGGAAACCCCAACATACTTTACACCTGTGTTTGATCTGCGAAGCAATACTGCTACGAAGCTATTCGATCAGTTGCTCCAAATTGATAAGAGGAGAGCAGCATCCTTTCATGTTAGATTTGTATGACATGGTGATTGACCCATGGAATCCAAACAACTTTTGCCTAGGAGGCAATGATGCATATGCTCGCCTCTATGACATGAGAAAATGCTGGCAGGATGCTTCAGGTGGTTTAGTTAAACCTGTGAACACATTTCGCCCTGCTCACCTGATTCAGACAACCCATTTTATGGCGTACTCTAACTCCGGTGAGCTACTTGTGAGTTATAGTGATGAGCACATTTTATCTGTTCCAGAAGAATATGGGGTTGGGTCATTCCCCATCGTTCCTACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005739 GO:0005829 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0019538 GO:0031461 GO:0031974 GO:0031981 GO:0032991 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043687 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:0080008 GO:1901564 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

175

Amino Acids

19.61

Weight (kDa)

6.64

Isoelectric Point (pI)

49.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010743)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45620 AT3G45620
fragaria_vesca	FvH4_3g33730 FvH4_3g34190
rosa_chinensis	RchiOBHm_Chr5g0061271
rosa_laevigata	RLG00000031642 RLG00000035447 RLG00000035448
rosa_multiflora	Rmu_sc0007612.1_g000043
rosa_roxburghii	Rroxscaffold_1G00019440
rosa_rugosa	Rorug04G0441700 Rorug05G0339200
rosa_samantha	Rh5AG071700 Rh5AG400400 Rh5BG068100 Rh5BG413500 Rh5CG438000 Rh5DG068300 Rh5DG427600
rosa_wichuraiana	Rw5G037730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	418
AcoI	YGGCCR	2 cut(s)	3, 65
AcuI	CTGAAG	1 cut(s)	336
AfaI	GTAC	1 cut(s)	425
AfiI	CCNNNNNNNGG	1 cut(s)	418
AjnI	CCWGG	1 cut(s)	128
AjuI	GAANNNNNNNTTGG	2 cut(s)	480, 512
AluBI	AGCT	3 cut(s)	116, 189, 442
AluI	AGCT	3 cut(s)	116, 189, 442
Alw21I	GWGCWC	1 cut(s)	468
AoxI	GGCC	2 cut(s)	3, 65
ApeKI	GCWGC	1 cut(s)	226
Asp700I	GAANNNNTTC	1 cut(s)	190
AspA2I	CCTAGG	1 cut(s)	292
AspLEI	GCGC	1 cut(s)	105
AsuHPI	GGTGA	5 cut(s)	52, 62, 271, 386, 449
AvrII	CCTAGG	1 cut(s)	292
BalI	TGGCCA	2 cut(s)	5, 67
Bbv12I	GWGCWC	1 cut(s)	468
BbvI	GCAGC	1 cut(s)	238
BccI	CCATC	3 cut(s)	57, 80, 518
BciT130I	CCWGG	1 cut(s)	130
BfaI	CTAG	2 cut(s)	47, 293
BfmI	CTRYAG	1 cut(s)	121
BfoI	RGCGCY	1 cut(s)	106
BglI	GCCNNNNNGGC	1 cut(s)	297
BisI	GCNGC	1 cut(s)	227
BlnI	CCTAGG	1 cut(s)	292
BlsI	GCNGC	1 cut(s)	228
Bme1390I	CCNGG	1 cut(s)	130
BmrFI	CCNGG	1 cut(s)	130
BmsI	GCATC	3 cut(s)	238, 295, 337
BpuEI	CTTGAG	1 cut(s)	20
BsaJI	CCNNGG	2 cut(s)	269, 292
BsaWI	WCCGGW	1 cut(s)	434
BsaXI	ACNNNNNCTCC	2 cut(s)	416, 446
Bsc4I	CCNNNNNNNGG	1 cut(s)	418
Bse3DI	GCAATG	1 cut(s)	307
BseBI	CCWGG	1 cut(s)	130
BseDI	CCNNGG	2 cut(s)	269, 292
BseGI	GGATG	4 cut(s)	68, 91, 229, 352
BseLI	CCNNNNNNNGG	1 cut(s)	418
BseMI	GCAATG	1 cut(s)	307
BseRI	GAGGAG	1 cut(s)	234
BseXI	GCAGC	1 cut(s)	238
BshFI	GGCC	2 cut(s)	5, 67
BsiHKAI	GWGCWC	1 cut(s)	468
BsiSI	CCGG	1 cut(s)	435
BslI	CCNNNNNNNGG	1 cut(s)	418
BsnI	GGCC	2 cut(s)	5, 67
Bsp1286I	GDGCHC	1 cut(s)	468
Bsp143I	GATC	2 cut(s)	162, 195
Bsp19I	CCATGG	1 cut(s)	269
BspANI	GGCC	2 cut(s)	5, 67
BsrDI	GCAATG	1 cut(s)	307
BssECI	CCNNGG	2 cut(s)	269, 292
BssMI	GATC	2 cut(s)	162, 195
BssT1I	CCWWGG	2 cut(s)	269, 292
Bst2UI	CCWGG	1 cut(s)	130
BstC8I	GCNNGC	3 cut(s)	118, 316, 341
BstDSI	CCRYGG	1 cut(s)	269
BstF5I	GGATG	4 cut(s)	68, 91, 229, 352
BstH2I	RGCGCY	1 cut(s)	106
BstHHI	GCGC	1 cut(s)	105
BstKTI	GATC	2 cut(s)	165, 198
BstMBI	GATC	2 cut(s)	162, 195
BstMWI	GCNNNNNNNGC	1 cut(s)	297
BstNI	CCWGG	1 cut(s)	130
BstSCI	CCNGG	1 cut(s)	128
BstSFI	CTRYAG	1 cut(s)	121
BstV1I	GCAGC	1 cut(s)	238
BsuRI	GGCC	2 cut(s)	5, 67
BtgI	CCRYGG	1 cut(s)	269
BtsCI	GGATG	4 cut(s)	68, 91, 229, 352
Cac8I	GCNNGC	3 cut(s)	118, 316, 341
CfoI	GCGC	1 cut(s)	105
Csp6I	GTAC	1 cut(s)	424
CviAII	CATG	4 cut(s)	238, 256, 270, 328
CviJI	RGCY	8 cut(s)	5, 46, 67, 116, 120, 128, 189, 442
CviKI_1	RGCY	8 cut(s)	5, 46, 67, 116, 120, 128, 189, 442
CviQI	GTAC	1 cut(s)	424
DpnI	GATC	2 cut(s)	164, 197
DpnII	GATC	2 cut(s)	162, 195
EaeI	YGGCCR	2 cut(s)	3, 65
Eco130I	CCWWGG	2 cut(s)	269, 292
Eco57I	CTGAAG	1 cut(s)	336
EcoRII	CCWGG	1 cut(s)	128
EcoT14I	CCWWGG	2 cut(s)	269, 292
EcoT22I	ATGCAT	1 cut(s)	310
ErhI	CCWWGG	2 cut(s)	269, 292
FaeI	CATG	4 cut(s)	241, 259, 273, 331
FatI	CATG	4 cut(s)	237, 255, 269, 327
FauNDI	CATATG	1 cut(s)	310
Fnu4HI	GCNGC	1 cut(s)	227
FokI	GGATG	4 cut(s)	75, 98, 216, 359
Fsp4HI	GCNGC	1 cut(s)	227
FspBI	CTAG	2 cut(s)	47, 293
GlaI	GCGC	1 cut(s)	104
GluI	GCNGC	1 cut(s)	227
HaeII	RGCGCY	1 cut(s)	106
HaeIII	GGCC	2 cut(s)	5, 67
HapII	CCGG	1 cut(s)	435
HhaI	GCGC	1 cut(s)	105
Hin1II	CATG	4 cut(s)	241, 259, 273, 331
Hin6I	GCGC	1 cut(s)	103
HinP1I	GCGC	1 cut(s)	103
HinfI	GANTC	4 cut(s)	33, 92, 274, 400
HpaII	CCGG	1 cut(s)	435
HphI	GGTGA	5 cut(s)	52, 62, 271, 386, 449
Hpy166II	GTNNAC	2 cut(s)	110, 376
Hpy188I	TCNGA	2 cut(s)	28, 405
Hpy188III	TCNNGA	1 cut(s)	482
Hpy8I	GTNNAC	2 cut(s)	110, 376
HpyAV	CCTTC	1 cut(s)	23
HpyCH4V	TGCA	1 cut(s)	308
HpyF10VI	GCNNNNNNNGC	1 cut(s)	297
Hsp92II	CATG	4 cut(s)	241, 259, 273, 331
HspAI	GCGC	1 cut(s)	103
Kzo9I	GATC	2 cut(s)	162, 195
LmnI	GCTCC	1 cut(s)	209
Lsp1109I	GCAGC	1 cut(s)	238
LweI	GCATC	3 cut(s)	238, 295, 337
MaeI	CTAG	2 cut(s)	47, 293
MaeIII	GTNAC	1 cut(s)	93
MalI	GATC	2 cut(s)	164, 197
MboI	GATC	2 cut(s)	162, 195
MboII	GAAGA	1 cut(s)	497
MhlI	GDGCHC	1 cut(s)	468
MlsI	TGGCCA	2 cut(s)	5, 67
MluCI	AATT	2 cut(s)	16, 209
MluNI	TGGCCA	2 cut(s)	5, 67
MlyI	GAGTC	2 cut(s)	27, 101
MnlI	CCTC	6 cut(s)	36, 46, 93, 212, 290, 329
Mox20I	TGGCCA	2 cut(s)	5, 67
Mph1103I	ATGCAT	1 cut(s)	310
MroXI	GAANNNNTTC	1 cut(s)	190
MscI	TGGCCA	2 cut(s)	5, 67
MseI	TTAA	1 cut(s)	366
Msp20I	TGGCCA	2 cut(s)	5, 67
MspI	CCGG	1 cut(s)	435
MspR9I	CCNGG	1 cut(s)	130
MvaI	CCWGG	1 cut(s)	130
MwoI	GCNNNNNNNGC	1 cut(s)	297
NcoI	CCATGG	1 cut(s)	269
NdeI	CATATG	1 cut(s)	310
NdeII	GATC	2 cut(s)	162, 195
NlaIII	CATG	4 cut(s)	241, 259, 273, 331
NmuCI	GTSAC	1 cut(s)	93
NsiI	ATGCAT	1 cut(s)	310
PdmI	GAANNNNTTC	1 cut(s)	190
PfeI	GAWTC	2 cut(s)	274, 400
PflMI	CCANNNNNTGG	1 cut(s)	418
PkrI	GCNGC	1 cut(s)	228
PleI	GAGTC	2 cut(s)	27, 100
PpsI	GAGTC	2 cut(s)	27, 100
Psp6I	CCWGG	1 cut(s)	128
PspGI	CCWGG	1 cut(s)	128
RsaI	GTAC	1 cut(s)	425
RsaNI	GTAC	1 cut(s)	424
SaqAI	TTAA	1 cut(s)	366
SatI	GCNGC	1 cut(s)	227
Sau3AI	GATC	2 cut(s)	162, 195
SchI	GAGTC	2 cut(s)	27, 101
ScrFI	CCNGG	1 cut(s)	130
SduI	GDGCHC	1 cut(s)	468
SfaNI	GCATC	3 cut(s)	238, 295, 337
SfcI	CTRYAG	1 cut(s)	121
SmlI	CTYRAG	1 cut(s)	35
SmoI	CTYRAG	1 cut(s)	35
Sse9I	AATT	2 cut(s)	16, 209
SspMI	CTAG	2 cut(s)	47, 293
StyD4I	CCNGG	1 cut(s)	128
StyI	CCWWGG	2 cut(s)	269, 292
TaqI	TCGA	1 cut(s)	194
TasI	AATT	2 cut(s)	16, 209
TfiI	GAWTC	2 cut(s)	274, 400
Tru1I	TTAA	1 cut(s)	366
Tru9I	TTAA	1 cut(s)	366
TseFI	GTSAC	1 cut(s)	93
TseI	GCWGC	1 cut(s)	226
Tsp45I	GTSAC	1 cut(s)	93
TspDTI	ATGAA	2 cut(s)	63, 226
Van91I	CCANNNNNTGG	1 cut(s)	418
XmaJI	CCTAGG	1 cut(s)	292
XmnI	GAANNNNTTC	1 cut(s)	190
XspI	CTAG	2 cut(s)	47, 293
Zsp2I	ATGCAT	1 cut(s)	310

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.