Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0010743

Physical Location & Seq

Genomic Coordinates Reverse (-)

60700981 .. 60703450

Gene Structure 2470 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG438000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1212 bp

ATGCAAATCACTAATGGCTTCTTCGATATTTGCAACCGAGAGACGGGCCTACGGCGACCCAGACGCTTTGCTCGTCAGTTCTCTGCTAACCAGAGCATCGTAAAGCAATTAGATATGTATGGGGAATTAAAGGGGCATAACGATTATGTAAGCTCCATAGAATTCAACTCCATTGGTGACCTCCTTGTGTCAGGGTCTTATGATAAACAAGTCATATTTTGGAACTGGGAAACTAAAACTAGAAGACTCTCTTATGATTCTGGACACTTGAAGATGGTATATCAGACAAAGATAATGCCTGTCACGAATGATCGGAGAATAGTAACCGCTTGTGCAGTTGGTCAGGTGAGGCTAGGTGAGGTCTTAGAGGATGGCCAAGTACATACAAAAAGGTTAGGGAGTCACAGAGGCGCTGTTCACAAGCTGGCTGTAGAGCCTGGAAACCCCAACATACTTTACAGCTGTGGTGACGATTCTTTTATTCAACACTTTGATCTGCGAAGCAATACTGCTACGAAGCTATTCAGTTGCTCCAAATTGATAAGAGGAGAGCAGCATCCTTTCACGTTAGATTTGTATGACATGGTGATTGACCCATGGAATCCAAACTACTTTTGTCTAGGAGGCAATGATGCATATGCACGCGTCTATGACATGAGAAAATGCTGGCAGGATGCTTCAGGTGGTTTAGTTAAACCTGTGAACACATTTCGCCCTGCTCACCTGATTCAGACAACCCATTTTATGATCACGGGGTTGGCGTACTCCAACTCCGGTGAGCTACTTGTGAGTTATAGTGATGAGCACATTTATCTGTTCCAGAAGAATATGGGGTTGGGTCATTCCCCATCGTTCCTACCTAAAGACATGGCGGAGCTTGACAAGCCAGAACAATTCATTGGTCATAGAAATATAAACACATGTAGAGTGAGTTTCTTTGGGCCAAATGATGAGTATGTCTTGAGTGGGAGTTATTGCGGCCATATTTTCATATGGAAGAATGGAGGTGAACTCATTCGTGTTATGATGGGCGATTCTCTCGGTGTACATGACATTCAGCCGCATCCACATAATCCGGTCATTGCCACCGGCGGATCGGGAAACAATCTAAAGCTCTGGACTCCTATGGCAGATGATCATGCATCTCCACTGCCTGACAACATTGCACAGGTGCTTTCTCAATCTCTCGCTGTCTCGCAGAGTAAAAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005739 GO:0005829 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0019538 GO:0031461 GO:0031974 GO:0031981 GO:0032991 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043687 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:0080008 GO:1901564 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

403

Amino Acids

45.41

Weight (kDa)

7.27

Isoelectric Point (pI)

45.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_WDR5	PF25175	38 - 116	2.2e-09	WDR5 beta-propeller domain
WD40	PF00400	41 - 75	5.4e-07	WD domain, G-beta repeat
WD40_CDC20-Fz	PF24807	41 - 175	2.2e-08	CDC20/Fizzy WD40 domain
WDR55	PF24796	41 - 170	3.2e-07	WDR55
Beta-prop_WDR3_1st	PF25173	42 - 111	3.5e-08	WDR3 first beta-propeller domain
Beta-prop_THOC3	PF25174	46 - 118	3e-07	THOC3 beta-propeller domain
WD40_Prp19	PF24814	52 - 221	3.2e-08	Prp19 WD40 domain
Beta-prop_THOC3	PF25174	104 - 177	3.2e-06	THOC3 beta-propeller domain
Beta-prop_WDR5	PF25175	298 - 373	7.2e-06	WDR5 beta-propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010743)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45620 AT3G45620
fragaria_vesca	FvH4_3g33730 FvH4_3g34190
rosa_chinensis	RchiOBHm_Chr5g0061271
rosa_laevigata	RLG00000031642 RLG00000035447 RLG00000035448
rosa_multiflora	Rmu_sc0007612.1_g000043
rosa_roxburghii	Rroxscaffold_1G00019440
rosa_rugosa	Rorug04G0441700 Rorug05G0339200
rosa_samantha	Rh5AG071700 Rh5AG400400 Rh5BG068100 Rh5BG413500 Rh5CG438000 Rh5DG068300 Rh5DG427600
rosa_wichuraiana	Rw5G037730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	645
AciI	CCGC	5 cut(s)	327, 872, 978, 1061, 1092
AclWI	GGATC	1 cut(s)	1102
AcoI	YGGCCR	2 cut(s)	373, 979
AcsI	RAATTY	1 cut(s)	161
AcuI	CTGAAG	1 cut(s)	663
AfaI	GTAC	3 cut(s)	381, 764, 1047
AfiI	CCNNNNNNNGG	1 cut(s)	43
AflIII	ACRYGT	2 cut(s)	643, 920
AgsI	TTSAA	3 cut(s)	166, 271, 485
AjnI	CCWGG	1 cut(s)	436
AjuI	GAANNNNNNNTTGG	4 cut(s)	818, 850, 882, 914
AluBI	AGCT	7 cut(s)	153, 424, 462, 520, 781, 877, 1114
AluI	AGCT	7 cut(s)	153, 424, 462, 520, 781, 877, 1114
Alw21I	GWGCWC	1 cut(s)	807
Alw26I	GTCTC	2 cut(s)	35, 1198
AlwI	GGATC	1 cut(s)	1102
AoxI	GGCC	4 cut(s)	46, 373, 941, 979
ApeKI	GCWGC	1 cut(s)	553
ApoI	RAATTY	1 cut(s)	161
Asp700I	GAANNNNTTC	2 cut(s)	521, 1014
AspLEI	GCGC	1 cut(s)	413
AspS9I	GGNCC	2 cut(s)	46, 941
AsuHPI	GGTGA	8 cut(s)	188, 358, 368, 479, 598, 713, 788, 1019
BalI	TGGCCA	1 cut(s)	375
BbsI	GAAGAC	1 cut(s)	250
Bbv12I	GWGCWC	1 cut(s)	807
BbvI	GCAGC	1 cut(s)	565
BccI	CCATC	4 cut(s)	268, 365, 856, 1021
BceAI	ACGGC	1 cut(s)	68
BciT130I	CCWGG	1 cut(s)	438
BclI	TGATCA	2 cut(s)	747, 1135
BcoDI	GTCTC	2 cut(s)	35, 1198
BfaI	CTAG	3 cut(s)	240, 353, 620
BfmI	CTRYAG	1 cut(s)	429
BfoI	RGCGCY	1 cut(s)	414
BisI	GCNGC	3 cut(s)	554, 979, 1061
BlsI	GCNGC	3 cut(s)	555, 980, 1062
Bme1390I	CCNGG	1 cut(s)	438
BmgT120I	GGNCC	2 cut(s)	46, 941
BmrFI	CCNGG	1 cut(s)	438
BmrI	ACTGGG	1 cut(s)	235
BmsI	GCATC	6 cut(s)	105, 565, 622, 664, 1072, 1151
BmuI	ACTGGG	1 cut(s)	235
BpiI	GAAGAC	1 cut(s)	250
BplI	GAGNNNNNCTC	2 cut(s)	996, 1028
BpuEI	CTTGAG	1 cut(s)	982
BsaJI	CCNNGG	1 cut(s)	596
BsaWI	WCCGGW	2 cut(s)	773, 1075
BsaXI	ACNNNNNCTCC	2 cut(s)	755, 785
Bsc4I	CCNNNNNNNGG	1 cut(s)	43
Bse118I	RCCGGY	1 cut(s)	1088
Bse1I	ACTGG	1 cut(s)	230
Bse3DI	GCAATG	3 cut(s)	634, 1080, 1161
BseBI	CCWGG	1 cut(s)	438
BseDI	CCNNGG	1 cut(s)	596
BseGI	GGATG	4 cut(s)	376, 556, 679, 1063
BseLI	CCNNNNNNNGG	1 cut(s)	43
BseMI	GCAATG	3 cut(s)	634, 1080, 1161
BseNI	ACTGG	1 cut(s)	230
BseRI	GAGGAG	1 cut(s)	561
BseXI	GCAGC	1 cut(s)	565
BsgI	GTGCAG	1 cut(s)	354
Bsh1236I	CGCG	1 cut(s)	645
BshFI	GGCC	4 cut(s)	48, 375, 943, 981
BsiHKAI	GWGCWC	1 cut(s)	807
BsiSI	CCGG	3 cut(s)	774, 1076, 1089
BslI	CCNNNNNNNGG	1 cut(s)	43
BsmAI	GTCTC	2 cut(s)	35, 1198
BsmBI	CGTCTC	1 cut(s)	35
BsnI	GGCC	4 cut(s)	48, 375, 943, 981
Bsp1286I	GDGCHC	1 cut(s)	807
Bsp1407I	TGTACA	1 cut(s)	1045
Bsp143I	GATC	5 cut(s)	310, 493, 747, 1094, 1135
Bsp19I	CCATGG	1 cut(s)	596
BspACI	CCGC	5 cut(s)	327, 872, 978, 1061, 1092
BspANI	GGCC	4 cut(s)	48, 375, 943, 981
BspFNI	CGCG	1 cut(s)	645
BspPI	GGATC	1 cut(s)	1102
BsrDI	GCAATG	3 cut(s)	634, 1080, 1161
BsrFI	RCCGGY	1 cut(s)	1088
BsrGI	TGTACA	1 cut(s)	1045
BsrI	ACTGG	1 cut(s)	230
BssAI	RCCGGY	1 cut(s)	1088
BssECI	CCNNGG	1 cut(s)	596
BssMI	GATC	5 cut(s)	310, 493, 747, 1094, 1135
BssT1I	CCWWGG	1 cut(s)	596
Bst2UI	CCWGG	1 cut(s)	438
BstAUI	TGTACA	1 cut(s)	1045
BstC8I	GCNNGC	3 cut(s)	426, 643, 668
BstDEI	CTNAG	1 cut(s)	364
BstDSI	CCRYGG	1 cut(s)	596
BstEII	GGTNACC	1 cut(s)	176
BstF5I	GGATG	4 cut(s)	376, 556, 679, 1063
BstFNI	CGCG	1 cut(s)	645
BstH2I	RGCGCY	1 cut(s)	414
BstHHI	GCGC	1 cut(s)	413
BstKTI	GATC	5 cut(s)	313, 496, 750, 1097, 1138
BstMAI	GTCTC	2 cut(s)	35, 1198
BstMBI	GATC	5 cut(s)	310, 493, 747, 1094, 1135
BstMWI	GCNNNNNNNGC	1 cut(s)	883
BstNI	CCWGG	1 cut(s)	438
BstNSI	RCATGY	1 cut(s)	924
BstPI	GGTNACC	1 cut(s)	176
BstSCI	CCNGG	1 cut(s)	436
BstSFI	CTRYAG	1 cut(s)	429
BstUI	CGCG	1 cut(s)	645
BstV1I	GCAGC	1 cut(s)	565
BstV2I	GAAGAC	1 cut(s)	250
BsuRI	GGCC	4 cut(s)	48, 375, 943, 981
BtgI	CCRYGG	1 cut(s)	596
BtsCI	GGATG	4 cut(s)	376, 556, 679, 1063
BtsI	GCAGTG	1 cut(s)	1148
BtsIMutI	CAGTG	1 cut(s)	1148
Cac8I	GCNNGC	3 cut(s)	426, 643, 668
CfoI	GCGC	1 cut(s)	413
Cfr10I	RCCGGY	1 cut(s)	1088
Cfr13I	GGNCC	2 cut(s)	46, 941
CseI	GACGC	2 cut(s)	72, 634
Csp6I	GTAC	3 cut(s)	380, 763, 1046
CviAII	CATG	7 cut(s)	583, 597, 655, 868, 921, 1049, 1139
CviQI	GTAC	3 cut(s)	380, 763, 1046
DdeI	CTNAG	1 cut(s)	364
DpnI	GATC	5 cut(s)	312, 495, 749, 1096, 1137
DpnII	GATC	5 cut(s)	310, 493, 747, 1094, 1135
EaeI	YGGCCR	2 cut(s)	373, 979
EciI	GGCGGA	2 cut(s)	887, 1107
Eco130I	CCWWGG	1 cut(s)	596
Eco57I	CTGAAG	1 cut(s)	663
Eco91I	GGTNACC	1 cut(s)	176
EcoO65I	GGTNACC	1 cut(s)	176
EcoRI	GAATTC	1 cut(s)	161
EcoRII	CCWGG	1 cut(s)	436
EcoT14I	CCWWGG	1 cut(s)	596
EcoT22I	ATGCAT	2 cut(s)	637, 1144
ErhI	CCWWGG	1 cut(s)	596
Esp3I	CGTCTC	1 cut(s)	35
FaeI	CATG	7 cut(s)	586, 600, 658, 871, 924, 1052, 1142
FalI	AAGNNNNNCTT	2 cut(s)	235, 267
FatI	CATG	7 cut(s)	582, 596, 654, 867, 920, 1048, 1138
FauNDI	CATATG	2 cut(s)	637, 992
FbaI	TGATCA	2 cut(s)	747, 1135
Fnu4HI	GCNGC	3 cut(s)	554, 979, 1061
FokI	GGATG	4 cut(s)	383, 543, 686, 1050
Fsp4HI	GCNGC	3 cut(s)	554, 979, 1061
FspBI	CTAG	3 cut(s)	240, 353, 620
GlaI	GCGC	1 cut(s)	412
GluI	GCNGC	3 cut(s)	554, 979, 1061
HaeII	RGCGCY	1 cut(s)	414
HaeIII	GGCC	4 cut(s)	48, 375, 943, 981
HapII	CCGG	3 cut(s)	774, 1076, 1089
HgaI	GACGC	2 cut(s)	72, 634
HhaI	GCGC	1 cut(s)	413
Hin1II	CATG	7 cut(s)	586, 600, 658, 871, 924, 1052, 1142
Hin6I	GCGC	1 cut(s)	411
HinP1I	GCGC	1 cut(s)	411
HinfI	GANTC	8 cut(s)	246, 257, 400, 473, 601, 727, 1034, 1120
HpaII	CCGG	3 cut(s)	774, 1076, 1089
HphI	GGTGA	8 cut(s)	188, 358, 368, 479, 598, 713, 788, 1019
Hpy166II	GTNNAC	4 cut(s)	418, 703, 1010, 1046
Hpy188I	TCNGA	3 cut(s)	285, 315, 732
Hpy188III	TCNNGA	6 cut(s)	261, 304, 820, 961, 1098, 1117
Hpy8I	GTNNAC	4 cut(s)	418, 703, 1010, 1046
HpyCH4IV	ACGT	1 cut(s)	566
HpyCH4V	TGCA	7 cut(s)	4, 33, 335, 635, 641, 1142, 1166
HpyF10VI	GCNNNNNNNGC	1 cut(s)	883
HpyF3I	CTNAG	1 cut(s)	364
HpySE526I	ACGT	1 cut(s)	566
Hsp92II	CATG	7 cut(s)	586, 600, 658, 871, 924, 1052, 1142
HspAI	GCGC	1 cut(s)	411
Ksp22I	TGATCA	2 cut(s)	747, 1135
Kzo9I	GATC	5 cut(s)	310, 493, 747, 1094, 1135
LmnI	GCTCC	3 cut(s)	158, 536, 874
Lsp1109I	GCAGC	1 cut(s)	565
LweI	GCATC	6 cut(s)	105, 565, 622, 664, 1072, 1151
MaeI	CTAG	3 cut(s)	240, 353, 620
MaeII	ACGT	1 cut(s)	566
MaeIII	GTNAC	5 cut(s)	176, 301, 322, 401, 467
MalI	GATC	5 cut(s)	312, 495, 749, 1096, 1137
MboI	GATC	5 cut(s)	310, 493, 747, 1094, 1135
MboII	GAAGA	5 cut(s)	13, 255, 283, 835, 1009
MhlI	GDGCHC	1 cut(s)	807
MlsI	TGGCCA	1 cut(s)	375
MluCI	AATT	5 cut(s)	107, 125, 161, 536, 893
MluI	ACGCGT	1 cut(s)	643
MluNI	TGGCCA	1 cut(s)	375
MlyI	GAGTC	3 cut(s)	240, 409, 1114
MmeI	TCCRAC	1 cut(s)	792
MnlI	CCTC	8 cut(s)	191, 342, 352, 361, 401, 539, 617, 998
Mox20I	TGGCCA	1 cut(s)	375
Mph1103I	ATGCAT	2 cut(s)	637, 1144
MroXI	GAANNNNTTC	2 cut(s)	521, 1014
MscI	TGGCCA	1 cut(s)	375
MseI	TTAA	2 cut(s)	128, 693
Msp20I	TGGCCA	1 cut(s)	375
MspA1I	CMGCKG	1 cut(s)	462
MspI	CCGG	3 cut(s)	774, 1076, 1089
MspR9I	CCNGG	1 cut(s)	438
MvaI	CCWGG	1 cut(s)	438
MvnI	CGCG	1 cut(s)	645
MwoI	GCNNNNNNNGC	1 cut(s)	883
NcoI	CCATGG	1 cut(s)	596
NdeI	CATATG	2 cut(s)	637, 992
NdeII	GATC	5 cut(s)	310, 493, 747, 1094, 1135
NlaIII	CATG	7 cut(s)	586, 600, 658, 871, 924, 1052, 1142
NmuCI	GTSAC	4 cut(s)	176, 301, 401, 467
NsiI	ATGCAT	2 cut(s)	637, 1144
NspI	RCATGY	1 cut(s)	924
PciI	ACATGT	1 cut(s)	920
PcsI	WCGNNNNNNNCGW	2 cut(s)	70, 758
PdmI	GAANNNNTTC	2 cut(s)	521, 1014
PfeI	GAWTC	5 cut(s)	257, 473, 601, 727, 1034
PkrI	GCNGC	3 cut(s)	555, 980, 1062
PleI	GAGTC	3 cut(s)	240, 408, 1114
PpsI	GAGTC	3 cut(s)	240, 408, 1114
PscI	ACATGT	1 cut(s)	920
Psp6I	CCWGG	1 cut(s)	436
PspEI	GGTNACC	1 cut(s)	176
PspGI	CCWGG	1 cut(s)	436
PspPI	GGNCC	2 cut(s)	46, 941
PvuII	CAGCTG	1 cut(s)	462
RsaI	GTAC	3 cut(s)	381, 764, 1047
RsaNI	GTAC	3 cut(s)	380, 763, 1046
SaqAI	TTAA	2 cut(s)	128, 693
SatI	GCNGC	3 cut(s)	554, 979, 1061
Sau3AI	GATC	5 cut(s)	310, 493, 747, 1094, 1135
Sau96I	GGNCC	2 cut(s)	46, 941
SchI	GAGTC	3 cut(s)	240, 409, 1114
ScrFI	CCNGG	1 cut(s)	438
SduI	GDGCHC	1 cut(s)	807
SfaNI	GCATC	6 cut(s)	105, 565, 622, 664, 1072, 1151
SfcI	CTRYAG	1 cut(s)	429
SgrAI	CRCCGGYG	1 cut(s)	1088
SmlI	CTYRAG	1 cut(s)	961
SmoI	CTYRAG	1 cut(s)	961
Sse9I	AATT	5 cut(s)	107, 125, 161, 536, 893
SsiI	CCGC	5 cut(s)	327, 872, 978, 1061, 1092
SspMI	CTAG	3 cut(s)	240, 353, 620
StyD4I	CCNGG	1 cut(s)	436
StyI	CCWWGG	1 cut(s)	596
TaiI	ACGT	1 cut(s)	569
TaqI	TCGA	1 cut(s)	24
TasI	AATT	5 cut(s)	107, 125, 161, 536, 893
TatI	WGTACW	2 cut(s)	379, 1045
TauI	GCSGC	2 cut(s)	981, 1063
TfiI	GAWTC	5 cut(s)	257, 473, 601, 727, 1034
Tru1I	TTAA	2 cut(s)	128, 693
Tru9I	TTAA	2 cut(s)	128, 693
TscAI	CASTG	1 cut(s)	1155
TseFI	GTSAC	4 cut(s)	176, 301, 401, 467
TseI	GCWGC	1 cut(s)	553
Tsp45I	GTSAC	4 cut(s)	176, 301, 401, 467
TspDTI	ATGAA	2 cut(s)	886, 979
TspRI	CASTG	1 cut(s)	1155
XapI	RAATTY	1 cut(s)	161
XceI	RCATGY	1 cut(s)	924
XmnI	GAANNNNTTC	2 cut(s)	521, 1014
XspI	CTAG	3 cut(s)	240, 353, 620
Zsp2I	ATGCAT	2 cut(s)	637, 1144

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.