Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0010743

Physical Location & Seq

Genomic Coordinates Reverse (-)

6989262 .. 6991598

Gene Structure 2337 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031642

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGGGAATCAAAGACGGGTTCGCCGAGATTCACAAGAGAGAGACAGGTGAAATGAGACCCACACGCTTCGCCCGCCAATTCTCCGTTAATGAGAGAGGTGTTTATAGAGAGTTAGGTGGGTATGAGGGTCCTGTAGTAATAGTCAGATTCAACGCTGGTGGCGACCTCGTTGCCACAGGTTGCTTTGGCAAAGCCACAGTTTGGAACTGGGAAACTCAAACTAGAAGGCTCTCGTACGATTCCGGGCACCGCGCAACGGTAATGGATACCTGGATAATGCCTAAAACCAATGACAAGAGACTGGTAACTGCTTGTTTTAATGGTCAGGTGGGAGTAGGTGAGATCTTGGAGGATGGTCAGGTTGTTGTAAAAAGCTTGACAACAAACTGTCAGTGTGTGTATAGGCTTGCTGTCAGGCCTGATATTCCCCACATACTGTATGGCACTATAGCTGTAGTGAGGATGTTTGATCTGAGAAGCAACCCTGTTATGGAGCTACTTCGTTGCACCCCATTATTGACAAAACAGAGGCACATCAAAGAGAGGGTAGAGGTGTATGCCATGGTATTTGACCCAAGTGATCCAAATTACTTTTGCAATTTAGATAAACCAGCGGACACATTTTGCCCTAACCACTTGATTGAGAGAAATGGTGTTCGCATCACAGGGTTGGCTTACACTAATTCAAACTCAAGTGAGCTACTTGTGACTTATTATAATGAGCATATATATCTATTCCAGAAGAATATGGGGTTGGGTCCCTCGCCATCTTCTGCGTTATCCATAGACATACTGAAGCTTGAGAAGCCACAAGTTTTCTTGGGAAATAGAAATGTATGGACACCCAGAGCAGTGAGCTTCTTTGGCCCCAATGATGATTATGTCTTGAGTGGGAGTGATTGTGGTCATATATATATTTTGGGAGGTAAACTTGTTCATGTTATGAAGGGTGATAGGTGTGTAAAGCTCTGGGGTCCTATGGCAAATGATGCTCTACCACCGCCTTACCCACACAACATACAAAAGATTACGAAGTCCAATGGAGTAAGGAGAGATGAGTTTCTGCAGACGATGGCCAACATTTACAACAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005739 GO:0005829 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0019538 GO:0031461 GO:0031974 GO:0031981 GO:0032991 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043687 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:0080008 GO:1901564 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

365

Amino Acids

41.12

Weight (kDa)

8.87

Isoelectric Point (pI)

36.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010743)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45620 AT3G45620
fragaria_vesca	FvH4_3g33730 FvH4_3g34190
rosa_chinensis	RchiOBHm_Chr5g0061271
rosa_laevigata	RLG00000031642 RLG00000035447 RLG00000035448
rosa_multiflora	Rmu_sc0007612.1_g000043
rosa_roxburghii	Rroxscaffold_1G00019440
rosa_rugosa	Rorug04G0441700 Rorug05G0339200
rosa_samantha	Rh5AG071700 Rh5AG400400 Rh5BG068100 Rh5BG413500 Rh5CG438000 Rh5DG068300 Rh5DG427600
rosa_wichuraiana	Rw5G037730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	717
AccB1I	GGYRCC	1 cut(s)	246
AccB7I	CCANNNNNTGG	1 cut(s)	201
AccII	CGCG	1 cut(s)	252
AciI	CCGC	4 cut(s)	73, 250, 614, 1001
AclWI	GGATC	1 cut(s)	575
AcoI	YGGCCR	1 cut(s)	1074
AcuI	CTGAAG	1 cut(s)	815
AfaI	GTAC	1 cut(s)	236
AfiI	CCNNNNNNNGG	3 cut(s)	201, 256, 490
AgsI	TTSAA	2 cut(s)	151, 687
AjnI	CCWGG	1 cut(s)	269
AjuI	GAANNNNNNNTTGG	2 cut(s)	737, 769
AluBI	AGCT	7 cut(s)	375, 452, 496, 700, 799, 858, 967
AluI	AGCT	7 cut(s)	375, 452, 496, 700, 799, 858, 967
Alw26I	GTCTC	3 cut(s)	35, 49, 292
AlwI	GGATC	1 cut(s)	575
AoxI	GGCC	3 cut(s)	416, 865, 1074
AspLEI	GCGC	1 cut(s)	254
AspS9I	GGNCC	4 cut(s)	128, 758, 866, 974
AsuC2I	CCSGG	1 cut(s)	244
AsuHPI	GGTGA	3 cut(s)	59, 350, 962
AvaII	GGWCC	3 cut(s)	128, 758, 974
BaeGI	GKGCMC	1 cut(s)	249
BalI	TGGCCA	1 cut(s)	1076
BanI	GGYRCC	1 cut(s)	246
BccI	CCATC	3 cut(s)	347, 775, 1066
BcgI	CGANNNNNNTGC	2 cut(s)	152, 186
BciT130I	CCWGG	1 cut(s)	271
BciVI	GTATCC	1 cut(s)	259
BcnI	CCSGG	1 cut(s)	244
BcoDI	GTCTC	3 cut(s)	35, 49, 292
BfaI	CTAG	1 cut(s)	222
BfmI	CTRYAG	4 cut(s)	132, 447, 453, 1064
BfuI	GTATCC	1 cut(s)	259
BglII	AGATCT	1 cut(s)	342
Bme1390I	CCNGG	2 cut(s)	244, 271
Bme18I	GGWCC	3 cut(s)	128, 758, 974
BmgT120I	GGNCC	4 cut(s)	128, 758, 866, 974
BmiI	GGNNCC	6 cut(s)	129, 248, 759, 760, 868, 975
BmrFI	CCNGG	2 cut(s)	244, 271
BmrI	ACTGGG	1 cut(s)	217
BmsI	GCATC	2 cut(s)	669, 979
BmuI	ACTGGG	1 cut(s)	217
BpuEI	CTTGAG	3 cut(s)	676, 821, 907
BpuMI	CCSGG	1 cut(s)	244
BsaI	GGTCTC	1 cut(s)	49
BsaJI	CCNNGG	1 cut(s)	561
BsaXI	ACNNNNNCTCC	2 cut(s)	886, 916
Bsc4I	CCNNNNNNNGG	3 cut(s)	201, 256, 490
Bse1I	ACTGG	2 cut(s)	212, 306
BseBI	CCWGG	1 cut(s)	271
BseDI	CCNNGG	1 cut(s)	561
BseGI	GGATG	2 cut(s)	358, 468
BseLI	CCNNNNNNNGG	3 cut(s)	201, 256, 490
BseMII	CTCAG	1 cut(s)	464
BseNI	ACTGG	2 cut(s)	212, 306
BseSI	GKGCMC	1 cut(s)	249
Bsh1236I	CGCG	1 cut(s)	252
BshFI	GGCC	3 cut(s)	418, 867, 1076
BshNI	GGYRCC	1 cut(s)	246
BsiSI	CCGG	1 cut(s)	243
BsiWI	CGTACG	1 cut(s)	234
BslFI	GGGAC	1 cut(s)	744
BslI	CCNNNNNNNGG	3 cut(s)	201, 256, 490
BsmAI	GTCTC	3 cut(s)	35, 49, 292
BsmFI	GGGAC	1 cut(s)	744
BsnI	GGCC	3 cut(s)	418, 867, 1076
Bso31I	GGTCTC	1 cut(s)	49
Bsp1286I	GDGCHC	1 cut(s)	249
Bsp143I	GATC	3 cut(s)	342, 469, 580
Bsp19I	CCATGG	1 cut(s)	561
BspACI	CCGC	4 cut(s)	73, 250, 614, 1001
BspANI	GGCC	3 cut(s)	418, 867, 1076
BspCNI	CTCAG	1 cut(s)	465
BspFNI	CGCG	1 cut(s)	252
BspLI	GGNNCC	6 cut(s)	129, 248, 759, 760, 868, 975
BspMAI	CTGCAG	1 cut(s)	1068
BspPI	GGATC	1 cut(s)	575
BspT107I	GGYRCC	1 cut(s)	246
BspTNI	GGTCTC	1 cut(s)	49
BsrI	ACTGG	2 cut(s)	212, 306
BssECI	CCNNGG	1 cut(s)	561
BssMI	GATC	3 cut(s)	342, 469, 580
BssT1I	CCWWGG	1 cut(s)	561
Bst2UI	CCWGG	1 cut(s)	271
Bst4CI	ACNGT	4 cut(s)	199, 259, 389, 438
BstAPI	GCANNNNNTGC	1 cut(s)	989
BstC8I	GCNNGC	2 cut(s)	73, 408
BstDEI	CTNAG	1 cut(s)	473
BstDSI	CCRYGG	1 cut(s)	561
BstF5I	GGATG	2 cut(s)	358, 468
BstFNI	CGCG	1 cut(s)	252
BstHHI	GCGC	1 cut(s)	254
BstKTI	GATC	3 cut(s)	345, 472, 583
BstMAI	GTCTC	3 cut(s)	35, 49, 292
BstMBI	GATC	3 cut(s)	342, 469, 580
BstMWI	GCNNNNNNNGC	4 cut(s)	72, 805, 864, 989
BstNI	CCWGG	1 cut(s)	271
BstSCI	CCNGG	2 cut(s)	242, 269
BstSFI	CTRYAG	4 cut(s)	132, 447, 453, 1064
BstSLI	GKGCMC	1 cut(s)	249
BstUI	CGCG	1 cut(s)	252
BstX2I	RGATCY	1 cut(s)	342
BstYI	RGATCY	1 cut(s)	342
BsuI	GTATCC	1 cut(s)	259
BsuRI	GGCC	3 cut(s)	418, 867, 1076
BtgI	CCRYGG	1 cut(s)	561
BtsCI	GGATG	2 cut(s)	358, 468
BtsI	GCAGTG	1 cut(s)	858
BtsIMutI	CAGTG	2 cut(s)	398, 858
Cac8I	GCNNGC	2 cut(s)	73, 408
CfoI	GCGC	1 cut(s)	254
Cfr13I	GGNCC	4 cut(s)	128, 758, 866, 974
Csp6I	GTAC	1 cut(s)	235
CspCI	CAANNNNNGTGG	2 cut(s)	139, 174
CviAII	CATG	2 cut(s)	562, 938
CviQI	GTAC	1 cut(s)	235
DdeI	CTNAG	1 cut(s)	473
DpnI	GATC	3 cut(s)	344, 471, 582
DpnII	GATC	3 cut(s)	342, 469, 580
EaeI	YGGCCR	1 cut(s)	1074
Eco130I	CCWWGG	1 cut(s)	561
Eco147I	AGGCCT	1 cut(s)	418
Eco31I	GGTCTC	1 cut(s)	49
Eco47I	GGWCC	3 cut(s)	128, 758, 974
Eco57I	CTGAAG	1 cut(s)	815
EcoO109I	RGGNCCY	3 cut(s)	128, 758, 974
EcoRII	CCWGG	1 cut(s)	269
EcoT14I	CCWWGG	1 cut(s)	561
ErhI	CCWWGG	1 cut(s)	561
FaeI	CATG	2 cut(s)	565, 941
FaqI	GGGAC	1 cut(s)	744
FatI	CATG	2 cut(s)	561, 937
FauI	CCCGC	1 cut(s)	80
FokI	GGATG	2 cut(s)	365, 475
FspBI	CTAG	1 cut(s)	222
GlaI	GCGC	1 cut(s)	253
HaeIII	GGCC	3 cut(s)	418, 867, 1076
HapII	CCGG	1 cut(s)	243
HhaI	GCGC	1 cut(s)	254
Hin1II	CATG	2 cut(s)	565, 941
Hin6I	GCGC	1 cut(s)	252
HinP1I	GCGC	1 cut(s)	252
HindIII	AAGCTT	2 cut(s)	373, 797
HinfI	GANTC	4 cut(s)	6, 28, 147, 239
HpaII	CCGG	1 cut(s)	243
HphI	GGTGA	3 cut(s)	59, 350, 962
Hpy166II	GTNNAC	1 cut(s)	929
Hpy188I	TCNGA	2 cut(s)	146, 474
Hpy188III	TCNNGA	2 cut(s)	739, 886
Hpy8I	GTNNAC	1 cut(s)	929
HpyAV	CCTTC	2 cut(s)	219, 940
HpyCH4III	ACNGT	4 cut(s)	199, 259, 389, 438
HpyCH4V	TGCA	3 cut(s)	507, 597, 1066
HpyF10VI	GCNNNNNNNGC	4 cut(s)	72, 805, 864, 989
HpyF3I	CTNAG	1 cut(s)	473
Hsp92II	CATG	2 cut(s)	565, 941
HspAI	GCGC	1 cut(s)	252
KflI	GGGWCCC	1 cut(s)	758
Kzo9I	GATC	3 cut(s)	342, 469, 580
LmnI	GCTCC	1 cut(s)	493
LweI	GCATC	2 cut(s)	669, 979
MaeI	CTAG	1 cut(s)	222
MaeIII	GTNAC	2 cut(s)	304, 706
MalI	GATC	3 cut(s)	344, 471, 582
MboI	GATC	3 cut(s)	342, 469, 580
MboII	GAAGA	2 cut(s)	754, 762
MflI	RGATCY	1 cut(s)	342
MhlI	GDGCHC	1 cut(s)	249
MlsI	TGGCCA	1 cut(s)	1076
MluCI	AATT	4 cut(s)	77, 586, 598, 682
MluNI	TGGCCA	1 cut(s)	1076
Mox20I	TGGCCA	1 cut(s)	1076
MscI	TGGCCA	1 cut(s)	1076
MseI	TTAA	2 cut(s)	87, 318
Msp20I	TGGCCA	1 cut(s)	1076
MspA1I	CMGCKG	1 cut(s)	614
MspI	CCGG	1 cut(s)	243
MspR9I	CCNGG	2 cut(s)	244, 271
MvaI	CCWGG	1 cut(s)	271
MvnI	CGCG	1 cut(s)	252
MwoI	GCNNNNNNNGC	4 cut(s)	72, 805, 864, 989
NciI	CCSGG	1 cut(s)	244
NcoI	CCATGG	1 cut(s)	561
NdeII	GATC	3 cut(s)	342, 469, 580
NlaIII	CATG	2 cut(s)	565, 941
NlaIV	GGNNCC	6 cut(s)	129, 248, 759, 760, 868, 975
NmeAIII	GCCGAG	1 cut(s)	49
NmuCI	GTSAC	1 cut(s)	706
PceI	AGGCCT	1 cut(s)	418
PcsI	WCGNNNNNNNCGW	2 cut(s)	21, 159
PfeI	GAWTC	4 cut(s)	6, 28, 147, 239
Pfl23II	CGTACG	1 cut(s)	234
PflMI	CCANNNNNTGG	1 cut(s)	201
PpuMI	RGGWCCY	3 cut(s)	128, 758, 974
PsiI	TTATAA	1 cut(s)	717
Psp5II	RGGWCCY	3 cut(s)	128, 758, 974
Psp6I	CCWGG	1 cut(s)	269
PspGI	CCWGG	1 cut(s)	269
PspLI	CGTACG	1 cut(s)	234
PspN4I	GGNNCC	6 cut(s)	129, 248, 759, 760, 868, 975
PspPI	GGNCC	4 cut(s)	128, 758, 866, 974
PspPPI	RGGWCCY	3 cut(s)	128, 758, 974
PstI	CTGCAG	1 cut(s)	1068
PsuI	RGATCY	1 cut(s)	342
RsaI	GTAC	1 cut(s)	236
RsaNI	GTAC	1 cut(s)	235
SaqAI	TTAA	2 cut(s)	87, 318
Sau3AI	GATC	3 cut(s)	342, 469, 580
Sau96I	GGNCC	4 cut(s)	128, 758, 866, 974
ScrFI	CCNGG	2 cut(s)	244, 271
SduI	GDGCHC	1 cut(s)	249
SfaNI	GCATC	2 cut(s)	669, 979
SfcI	CTRYAG	4 cut(s)	132, 447, 453, 1064
SinI	GGWCC	3 cut(s)	128, 758, 974
SmlI	CTYRAG	3 cut(s)	691, 800, 886
SmoI	CTYRAG	3 cut(s)	691, 800, 886
Sse9I	AATT	4 cut(s)	77, 586, 598, 682
SseBI	AGGCCT	1 cut(s)	418
SsiI	CCGC	4 cut(s)	73, 250, 614, 1001
SspMI	CTAG	1 cut(s)	222
StuI	AGGCCT	1 cut(s)	418
StyD4I	CCNGG	2 cut(s)	242, 269
StyI	CCWWGG	1 cut(s)	561
TaaI	ACNGT	4 cut(s)	199, 259, 389, 438
TasI	AATT	4 cut(s)	77, 586, 598, 682
TfiI	GAWTC	4 cut(s)	6, 28, 147, 239
Tru1I	TTAA	2 cut(s)	87, 318
Tru9I	TTAA	2 cut(s)	87, 318
TscAI	CASTG	2 cut(s)	398, 858
TseFI	GTSAC	1 cut(s)	706
Tsp45I	GTSAC	1 cut(s)	706
TspDTI	ATGAA	2 cut(s)	926, 959
TspGWI	ACGGA	1 cut(s)	73
TspRI	CASTG	2 cut(s)	398, 858
Van91I	CCANNNNNTGG	1 cut(s)	201
VpaK11BI	GGWCC	3 cut(s)	128, 758, 974
XcmI	CCANNNNNNNNNTGG	1 cut(s)	437
XspI	CTAG	1 cut(s)	222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.