Rh5AG071700

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
Physical Location & Seq
Reverse (-)
6154588 .. 6154857
270 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG071700.1

Sequence Viewer

Length: 270 bp
ATGGATACCTGGATAATGCCTAATACCAATGACAAGAGACCGGTAACTGCTTGTTGTAATGGTCAGGTTGAATTTCTGTCTACAAATTTTTCGTGTATGCCTTGTTCCATTATAGAAGAAAATTTTGGGTGCTGTCCCTTTTGTCTTTCGTTGTTATTATGTAGATATTTTGCATTCTGTCTTCATTATCTTTTAGAGCTGCTGCTGTTGATTTGGATGGGGTCATCAAAATGCTCTAGTGTTGCATTGTTATTTAGGGCTGTTCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

89

Amino Acids

10.12

Weight (kDa)

5.59

Isoelectric Point (pI)

51.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 80
AcsI RAATTY 3 cut(s) 71, 85, 121
AgeI ACCGGT 1 cut(s) 40
AgsI TTSAA 1 cut(s) 71
AjnI CCWGG 1 cut(s) 8
AjuI GAANNNNNNNTTGG 2 cut(s) 108, 140
AluBI AGCT 1 cut(s) 199
AluI AGCT 1 cut(s) 199
Alw26I GTCTC 1 cut(s) 31
ApeKI GCWGC 2 cut(s) 199, 202
ApoI RAATTY 3 cut(s) 71, 85, 121
AsiGI ACCGGT 1 cut(s) 40
BbsI GAAGAC 1 cut(s) 173
BbvI GCAGC 2 cut(s) 186, 189
BccI CCATC 1 cut(s) 211
BciT130I CCWGG 1 cut(s) 10
BcoDI GTCTC 1 cut(s) 31
BfaI CTAG 1 cut(s) 237
BisI GCNGC 2 cut(s) 200, 203
BlsI GCNGC 2 cut(s) 201, 204
Bme1390I CCNGG 1 cut(s) 10
BmrFI CCNGG 1 cut(s) 10
BpiI GAAGAC 1 cut(s) 173
BsaI GGTCTC 1 cut(s) 31
BsaWI WCCGGW 1 cut(s) 40
Bse118I RCCGGY 1 cut(s) 40
BseBI CCWGG 1 cut(s) 10
BseGI GGATG 1 cut(s) 222
BseXI GCAGC 2 cut(s) 186, 189
BshTI ACCGGT 1 cut(s) 40
BsiSI CCGG 1 cut(s) 41
BslFI GGGAC 1 cut(s) 120
BsmAI GTCTC 1 cut(s) 31
BsmFI GGGAC 1 cut(s) 120
BsmI GAATGC 1 cut(s) 173
Bso31I GGTCTC 1 cut(s) 31
BspTNI GGTCTC 1 cut(s) 31
BsrFI RCCGGY 1 cut(s) 40
BssAI RCCGGY 1 cut(s) 40
Bst2UI CCWGG 1 cut(s) 10
BstF5I GGATG 1 cut(s) 222
BstMAI GTCTC 1 cut(s) 31
BstNI CCWGG 1 cut(s) 10
BstSCI CCNGG 1 cut(s) 8
BstV1I GCAGC 2 cut(s) 186, 189
BstV2I GAAGAC 1 cut(s) 173
BtsCI GGATG 1 cut(s) 222
Cfr10I RCCGGY 1 cut(s) 40
CspAI ACCGGT 1 cut(s) 40
CviJI RGCY 2 cut(s) 199, 260
CviKI_1 RGCY 2 cut(s) 199, 260
Eco31I GGTCTC 1 cut(s) 31
EcoRII CCWGG 1 cut(s) 8
FaiI YATR 3 cut(s) 98, 113, 160
FaqI GGGAC 1 cut(s) 120
FblI GTMKAC 1 cut(s) 80
Fnu4HI GCNGC 2 cut(s) 200, 203
FokI GGATG 1 cut(s) 229
Fsp4HI GCNGC 2 cut(s) 200, 203
FspBI CTAG 1 cut(s) 237
GluI GCNGC 2 cut(s) 200, 203
HapII CCGG 1 cut(s) 41
HpaII CCGG 1 cut(s) 41
Hpy166II GTNNAC 1 cut(s) 81
Hpy8I GTNNAC 1 cut(s) 81
HpyCH4V TGCA 2 cut(s) 173, 245
LpnPI CCDG 3 cut(s) 22, 50, 54
Lsp1109I GCAGC 2 cut(s) 186, 189
MaeI CTAG 1 cut(s) 237
MaeIII GTNAC 1 cut(s) 43
MboII GAAGA 2 cut(s) 128, 173
MluCI AATT 3 cut(s) 71, 85, 121
MslI CAYNNNNRTG 1 cut(s) 229
MspI CCGG 1 cut(s) 41
MspR9I CCNGG 1 cut(s) 10
Mva1269I GAATGC 1 cut(s) 173
MvaI CCWGG 1 cut(s) 10
PctI GAATGC 1 cut(s) 173
PinAI ACCGGT 1 cut(s) 40
PkrI GCNGC 2 cut(s) 201, 204
Psp6I CCWGG 1 cut(s) 8
PspGI CCWGG 1 cut(s) 8
PsrI GAACNNNNNNTAC 2 cut(s) 88, 120
RseI CAYNNNNRTG 1 cut(s) 229
SatI GCNGC 2 cut(s) 200, 203
ScrFI CCNGG 1 cut(s) 10
SetI ASST 3 cut(s) 11, 69, 201
SgeI CNNG 9 cut(s) 21, 22, 46, 53, 63, 77, 105, 114, 249
SmiMI CAYNNNNRTG 1 cut(s) 229
Sse9I AATT 3 cut(s) 71, 85, 121
SspMI CTAG 1 cut(s) 237
StyD4I CCNGG 1 cut(s) 8
TasI AATT 3 cut(s) 71, 85, 121
TseI GCWGC 2 cut(s) 199, 202
TspDTI ATGAA 1 cut(s) 173
XapI RAATTY 3 cut(s) 71, 85, 121
XmiI GTMKAC 1 cut(s) 80
XspI CTAG 1 cut(s) 237
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.