Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0010743

Physical Location & Seq

Genomic Coordinates Reverse (-)

5572903 .. 5574763

Gene Structure 1861 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG068100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGGATACCTGGATAATGCATAATACCAATGACAAGAGACTGGTAACTGCTTGTTGTAATGGTCAGGTGAGACTAGGTGAGATCTTGGAGGATGGTCAAGTTGTTGTAAAAAGCTTGGCAACAAACTGTCAGTGTGTGTATAGGCTTGCTGTCAAGCCTGATATTCCCCACATACTGTATAGCTGTAGTGAGGATGGTTTGATTCGACAATTTGATCTGAGAAGCAACTCTGTTATGGAGCTACTTCGTTGCACCCCATTATTGACAAAACAGAAGCACATCAAAGAGAGGGTAGAGGTGTATGCCATGGTATTTGACCCAAGTGATCCAAATTACTTTTGCATCGGAGCTGATGATGTCTATGCACGTGTCTATGACATCAGAAATTTGCAGCGCGATACGCCAAGGAATTTAGATAAACCAGTGGACACATTTTGCCCTAACCACTTGATTGAGAGAAATGGTGTTCACATCACAGGGTTGGCTTACGCTAATTCAAACTCAAGTGAGCTACTTGTGACTTATTATAATGAGCATATATATCTATTCCAGAAGAATATGGGGTTGGGTCCCTCGCCATCTTCTGCGTTATCCAAAGACATACTGAAGCTTGAGAAGCCACAAGTTTTCTTGGGAAATAGAAATGCATGGACACCCAGAGCAGTGAGCTTCTTCGGCCCCAATGATGATTATGTCTTGAGTGAGAGTGATTGTGGTCATATATATATTTGGAAGAAGAAAGGAGGTAAACTTGTTCGTGTTATGAAGGGTAGTGCTAGATCATGTGGTCTAGATCATGTAGAGCCCCATCCACATTTTCCTAGTCTTGCAAGTTCTGGATCAGATAGGTGTGTAAAGCTCTGGGGTCCTATGGCAAATGATGCTCTACCACCGCCTTACCCACACAACATAGAAAAGATTATGAAGTCCAATGGAGTAAGGAGAGATGAGTTTCTGCAGACGATGGCCAACATTTACAACAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005739 GO:0005829 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0019538 GO:0031461 GO:0031974 GO:0031981 GO:0032991 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043687 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:0080008 GO:1901564 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

328

Amino Acids

37.19

Weight (kDa)

8.22

Isoelectric Point (pI)

47.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010743)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45620 AT3G45620
fragaria_vesca	FvH4_3g33730 FvH4_3g34190
rosa_chinensis	RchiOBHm_Chr5g0061271
rosa_laevigata	RLG00000031642 RLG00000035447 RLG00000035448
rosa_multiflora	Rmu_sc0007612.1_g000043
rosa_roxburghii	Rroxscaffold_1G00019440
rosa_rugosa	Rorug04G0441700 Rorug05G0339200
rosa_samantha	Rh5AG071700 Rh5AG400400 Rh5BG068100 Rh5BG413500 Rh5CG438000 Rh5DG068300 Rh5DG427600
rosa_wichuraiana	Rw5G037730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	528
AccII	CGCG	1 cut(s)	396
AciI	CCGC	1 cut(s)	893
AclWI	GGATC	2 cut(s)	320, 847
AcoI	YGGCCR	1 cut(s)	966
AcsI	RAATTY	2 cut(s)	385, 409
AcuI	CTGAAG	1 cut(s)	626
AcvI	CACGTG	1 cut(s)	368
AflIII	ACRYGT	1 cut(s)	367
AgsI	TTSAA	1 cut(s)	498
AjnI	CCWGG	1 cut(s)	8
AjuI	GAANNNNNNNTTGG	2 cut(s)	548, 580
AluBI	AGCT	8 cut(s)	114, 183, 241, 350, 511, 610, 669, 859
AluI	AGCT	8 cut(s)	114, 183, 241, 350, 511, 610, 669, 859
Alw26I	GTCTC	2 cut(s)	31, 64
AlwI	GGATC	2 cut(s)	320, 847
AoxI	GGCC	2 cut(s)	676, 966
ApeKI	GCWGC	1 cut(s)	391
ApoI	RAATTY	2 cut(s)	385, 409
AspLEI	GCGC	1 cut(s)	396
AspS9I	GGNCC	3 cut(s)	569, 677, 866
AsuHPI	GGTGA	2 cut(s)	79, 89
AvaII	GGWCC	2 cut(s)	569, 866
BalI	TGGCCA	1 cut(s)	968
BanII	GRGCYC	1 cut(s)	807
BbrPI	CACGTG	1 cut(s)	368
BbvI	GCAGC	1 cut(s)	403
BccI	CCATC	5 cut(s)	86, 188, 586, 816, 958
BciT130I	CCWGG	1 cut(s)	10
BcoDI	GTCTC	2 cut(s)	31, 64
BfaI	CTAG	4 cut(s)	74, 777, 791, 822
BfmI	CTRYAG	2 cut(s)	184, 956
BglII	AGATCT	1 cut(s)	81
BisI	GCNGC	1 cut(s)	392
BlsI	GCNGC	1 cut(s)	393
Bme1390I	CCNGG	1 cut(s)	10
Bme18I	GGWCC	2 cut(s)	569, 866
BmgT120I	GGNCC	3 cut(s)	569, 677, 866
BmiI	GGNNCC	4 cut(s)	570, 571, 679, 867
BmrFI	CCNGG	1 cut(s)	10
BmsI	GCATC	2 cut(s)	351, 871
BpuEI	CTTGAG	3 cut(s)	487, 632, 718
BsaAI	YACGTR	1 cut(s)	368
BsaJI	CCNNGG	2 cut(s)	306, 404
Bse1I	ACTGG	2 cut(s)	45, 422
BseBI	CCWGG	1 cut(s)	10
BseDI	CCNNGG	2 cut(s)	306, 404
BseGI	GGATG	3 cut(s)	97, 199, 808
BseMII	CTCAG	1 cut(s)	209
BseNI	ACTGG	2 cut(s)	45, 422
BseXI	GCAGC	1 cut(s)	403
Bsh1236I	CGCG	1 cut(s)	396
BshFI	GGCC	2 cut(s)	678, 968
BslFI	GGGAC	1 cut(s)	555
BsmAI	GTCTC	2 cut(s)	31, 64
BsmFI	GGGAC	1 cut(s)	555
BsnI	GGCC	2 cut(s)	678, 968
Bsp1286I	GDGCHC	1 cut(s)	807
Bsp143I	GATC	6 cut(s)	81, 214, 325, 779, 793, 839
Bsp19I	CCATGG	1 cut(s)	306
BspACI	CCGC	1 cut(s)	893
BspANI	GGCC	2 cut(s)	678, 968
BspCNI	CTCAG	1 cut(s)	210
BspFNI	CGCG	1 cut(s)	396
BspLI	GGNNCC	4 cut(s)	570, 571, 679, 867
BspMAI	CTGCAG	1 cut(s)	960
BspPI	GGATC	2 cut(s)	320, 847
BsrI	ACTGG	2 cut(s)	45, 422
BssECI	CCNNGG	2 cut(s)	306, 404
BssMI	GATC	6 cut(s)	81, 214, 325, 779, 793, 839
BssT1I	CCWWGG	2 cut(s)	306, 404
Bst2UI	CCWGG	1 cut(s)	10
Bst4CI	ACNGT	2 cut(s)	128, 177
BstAPI	GCANNNNNTGC	1 cut(s)	881
BstBAI	YACGTR	1 cut(s)	368
BstC8I	GCNNGC	1 cut(s)	147
BstDEI	CTNAG	1 cut(s)	218
BstDSI	CCRYGG	1 cut(s)	306
BstF5I	GGATG	3 cut(s)	97, 199, 808
BstFNI	CGCG	1 cut(s)	396
BstHHI	GCGC	1 cut(s)	396
BstKTI	GATC	6 cut(s)	84, 217, 328, 782, 796, 842
BstMAI	GTCTC	2 cut(s)	31, 64
BstMBI	GATC	6 cut(s)	81, 214, 325, 779, 793, 839
BstMWI	GCNNNNNNNGC	4 cut(s)	400, 616, 675, 881
BstNI	CCWGG	1 cut(s)	10
BstSCI	CCNGG	1 cut(s)	8
BstSFI	CTRYAG	2 cut(s)	184, 956
BstUI	CGCG	1 cut(s)	396
BstV1I	GCAGC	1 cut(s)	403
BstX2I	RGATCY	1 cut(s)	81
BstYI	RGATCY	1 cut(s)	81
BsuRI	GGCC	2 cut(s)	678, 968
BtgI	CCRYGG	1 cut(s)	306
BtsCI	GGATG	3 cut(s)	97, 199, 808
BtsI	GCAGTG	1 cut(s)	669
BtsIMutI	CAGTG	3 cut(s)	137, 429, 669
Cac8I	GCNNGC	1 cut(s)	147
CfoI	GCGC	1 cut(s)	396
Cfr13I	GGNCC	3 cut(s)	569, 677, 866
CviAII	CATG	4 cut(s)	307, 648, 783, 797
DdeI	CTNAG	1 cut(s)	218
DpnI	GATC	6 cut(s)	83, 216, 327, 781, 795, 841
DpnII	GATC	6 cut(s)	81, 214, 325, 779, 793, 839
EaeI	YGGCCR	1 cut(s)	966
Eco130I	CCWWGG	2 cut(s)	306, 404
Eco24I	GRGCYC	1 cut(s)	807
Eco47I	GGWCC	2 cut(s)	569, 866
Eco57I	CTGAAG	1 cut(s)	626
Eco72I	CACGTG	1 cut(s)	368
EcoO109I	RGGNCCY	2 cut(s)	569, 866
EcoRII	CCWGG	1 cut(s)	8
EcoT14I	CCWWGG	2 cut(s)	306, 404
EcoT22I	ATGCAT	2 cut(s)	21, 649
EcoT38I	GRGCYC	1 cut(s)	807
ErhI	CCWWGG	2 cut(s)	306, 404
FaeI	CATG	4 cut(s)	310, 651, 786, 800
FaqI	GGGAC	1 cut(s)	555
FatI	CATG	4 cut(s)	306, 647, 782, 796
Fnu4HI	GCNGC	1 cut(s)	392
FokI	GGATG	3 cut(s)	104, 206, 795
FriOI	GRGCYC	1 cut(s)	807
Fsp4HI	GCNGC	1 cut(s)	392
FspBI	CTAG	4 cut(s)	74, 777, 791, 822
GlaI	GCGC	1 cut(s)	395
GluI	GCNGC	1 cut(s)	392
HaeIII	GGCC	2 cut(s)	678, 968
HhaI	GCGC	1 cut(s)	396
Hin1II	CATG	4 cut(s)	310, 651, 786, 800
Hin6I	GCGC	1 cut(s)	394
HinP1I	GCGC	1 cut(s)	394
HindIII	AAGCTT	2 cut(s)	112, 608
HinfI	GANTC	1 cut(s)	202
HphI	GGTGA	2 cut(s)	79, 89
Hpy166II	GTNNAC	3 cut(s)	427, 469, 749
Hpy188I	TCNGA	4 cut(s)	219, 347, 383, 844
Hpy188III	TCNNGA	4 cut(s)	550, 697, 791, 837
Hpy8I	GTNNAC	3 cut(s)	427, 469, 749
HpyAV	CCTTC	1 cut(s)	760
HpyCH4III	ACNGT	2 cut(s)	128, 177
HpyCH4IV	ACGT	1 cut(s)	367
HpyCH4V	TGCA	8 cut(s)	19, 252, 342, 365, 391, 647, 830, 958
HpyF10VI	GCNNNNNNNGC	4 cut(s)	400, 616, 675, 881
HpyF3I	CTNAG	1 cut(s)	218
HpySE526I	ACGT	1 cut(s)	367
Hsp92II	CATG	4 cut(s)	310, 651, 786, 800
HspAI	GCGC	1 cut(s)	394
KflI	GGGWCCC	1 cut(s)	569
Kzo9I	GATC	6 cut(s)	81, 214, 325, 779, 793, 839
LmnI	GCTCC	2 cut(s)	238, 347
Lsp1109I	GCAGC	1 cut(s)	403
LweI	GCATC	2 cut(s)	351, 871
MaeI	CTAG	4 cut(s)	74, 777, 791, 822
MaeII	ACGT	1 cut(s)	367
MaeIII	GTNAC	2 cut(s)	43, 517
MalI	GATC	6 cut(s)	83, 216, 327, 781, 795, 841
MboI	GATC	6 cut(s)	81, 214, 325, 779, 793, 839
MboII	GAAGA	5 cut(s)	565, 573, 664, 745, 748
MflI	RGATCY	1 cut(s)	81
MhlI	GDGCHC	1 cut(s)	807
MlsI	TGGCCA	1 cut(s)	968
MluCI	AATT	5 cut(s)	209, 331, 385, 409, 493
MluNI	TGGCCA	1 cut(s)	968
MnlI	CCTC	6 cut(s)	82, 184, 282, 289, 583, 737
Mox20I	TGGCCA	1 cut(s)	968
Mph1103I	ATGCAT	2 cut(s)	21, 649
MscI	TGGCCA	1 cut(s)	968
Msp20I	TGGCCA	1 cut(s)	968
MspR9I	CCNGG	1 cut(s)	10
MvaI	CCWGG	1 cut(s)	10
MvnI	CGCG	1 cut(s)	396
MwoI	GCNNNNNNNGC	4 cut(s)	400, 616, 675, 881
NcoI	CCATGG	1 cut(s)	306
NdeII	GATC	6 cut(s)	81, 214, 325, 779, 793, 839
NlaIII	CATG	4 cut(s)	310, 651, 786, 800
NlaIV	GGNNCC	4 cut(s)	570, 571, 679, 867
NmuCI	GTSAC	1 cut(s)	517
NsiI	ATGCAT	2 cut(s)	21, 649
PfeI	GAWTC	1 cut(s)	202
PkrI	GCNGC	1 cut(s)	393
PmaCI	CACGTG	1 cut(s)	368
PmlI	CACGTG	1 cut(s)	368
Ppu21I	YACGTR	1 cut(s)	368
PpuMI	RGGWCCY	2 cut(s)	569, 866
PsiI	TTATAA	1 cut(s)	528
Psp5II	RGGWCCY	2 cut(s)	569, 866
Psp6I	CCWGG	1 cut(s)	8
PspCI	CACGTG	1 cut(s)	368
PspGI	CCWGG	1 cut(s)	8
PspN4I	GGNNCC	4 cut(s)	570, 571, 679, 867
PspPI	GGNCC	3 cut(s)	569, 677, 866
PspPPI	RGGWCCY	2 cut(s)	569, 866
PstI	CTGCAG	1 cut(s)	960
PsuI	RGATCY	1 cut(s)	81
SatI	GCNGC	1 cut(s)	392
Sau3AI	GATC	6 cut(s)	81, 214, 325, 779, 793, 839
Sau96I	GGNCC	3 cut(s)	569, 677, 866
ScrFI	CCNGG	1 cut(s)	10
SduI	GDGCHC	1 cut(s)	807
SfaNI	GCATC	2 cut(s)	351, 871
SfcI	CTRYAG	2 cut(s)	184, 956
SinI	GGWCC	2 cut(s)	569, 866
SmlI	CTYRAG	3 cut(s)	502, 611, 697
SmoI	CTYRAG	3 cut(s)	502, 611, 697
Sse9I	AATT	5 cut(s)	209, 331, 385, 409, 493
SsiI	CCGC	1 cut(s)	893
SspMI	CTAG	4 cut(s)	74, 777, 791, 822
StyD4I	CCNGG	1 cut(s)	8
StyI	CCWWGG	2 cut(s)	306, 404
TaaI	ACNGT	2 cut(s)	128, 177
TaiI	ACGT	1 cut(s)	370
TaqI	TCGA	1 cut(s)	205
TasI	AATT	5 cut(s)	209, 331, 385, 409, 493
TfiI	GAWTC	1 cut(s)	202
TscAI	CASTG	3 cut(s)	137, 429, 669
TseFI	GTSAC	1 cut(s)	517
TseI	GCWGC	1 cut(s)	391
Tsp45I	GTSAC	1 cut(s)	517
TspDTI	ATGAA	2 cut(s)	779, 938
TspRI	CASTG	3 cut(s)	137, 429, 669
VpaK11BI	GGWCC	2 cut(s)	569, 866
XapI	RAATTY	2 cut(s)	385, 409
XbaI	TCTAGA	1 cut(s)	790
XspI	CTAG	4 cut(s)	74, 777, 791, 822
Zsp2I	ATGCAT	2 cut(s)	21, 649

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.