Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0013765

Physical Location & Seq

Genomic Coordinates Reverse (-)

78196346 .. 78197590

Gene Structure 1245 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ34722

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGGACGGCGGTGAGGGCGCATTCAAATGGACCAGGCTGTGGAGAAGAAGCAAGGTGGCTGGAGTTGTGGGGAAGCTGCAGGTCCGCCGGAGTCTTACTTCTTCGAGGGATATGTGGCTTCCCGAGGTGTTTGTTGTCGTCGCATCTCTCCATCTGGGTCGTCTGTTGGTACGGGAGTCAGGGACGTTTCACTGGTTCTGCGGTACCGGACTGCTGGAGGCTTGGTGGCGGGTTGGTGCAGCGGCGGCAAGATCACAGGCTCCGCTAGGTTGGCTGCAAGGGCAAAACCCCATTACATTTGTGCTTGGGCCCAATTGGGCTGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

108

Amino Acids

12.06

Weight (kDa)

11.14

Isoelectric Point (pI)

44.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013765)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0072251 RchiOBHm_Chr7g0213171
rosa_laevigata	RLG00000001471 RLG00000002827 RLG00000021574 RLG00000033882
rosa_multiflora	Rmu_co8182758.1_g000001 Rmu_sc0028836.1_g000001 Rmu_sc0032877.1_g000003 Rmu_ssc0000084.1_g000011
rosa_roxburghii	Rroxscaffold_4G00300480 Rroxscaffold_5G00332980
rosa_rugosa	Rorug07G0139900
rosa_samantha	Rh7AG271600 Rh7BG267300 Rh7CG290900 Rh7DG279700
rosa_wichuraiana	Rw7G023570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	70
Acc65I	GGTACC	1 cut(s)	203
AccB1I	GGYRCC	1 cut(s)	203
AccB7I	CCANNNNNTGG	1 cut(s)	39
AciI	CCGC	7 cut(s)	9, 85, 201, 229, 242, 245, 263
AfaI	GTAC	2 cut(s)	171, 205
AfiI	CCNNNNNNNGG	1 cut(s)	39
AgsI	TTSAA	1 cut(s)	25
AjnI	CCWGG	1 cut(s)	32
AluBI	AGCT	1 cut(s)	76
AluI	AGCT	1 cut(s)	76
Ama87I	CYCGRG	1 cut(s)	122
AoxI	GGCC	1 cut(s)	308
ApaI	GGGCCC	1 cut(s)	312
ApeKI	GCWGC	3 cut(s)	76, 239, 274
Asp718I	GGTACC	1 cut(s)	203
AspLEI	GCGC	1 cut(s)	20
AspS9I	GGNCC	4 cut(s)	30, 82, 308, 309
AsuHPI	GGTGA	1 cut(s)	23
AvaI	CYCGRG	1 cut(s)	122
AvaII	GGWCC	2 cut(s)	30, 82
BaeGI	GKGCMC	1 cut(s)	312
BaeI	ACNNNNGTAYC	2 cut(s)	161, 194
BanI	GGYRCC	1 cut(s)	203
BanII	GRGCYC	1 cut(s)	312
BbvI	GCAGC	3 cut(s)	63, 251, 261
BccI	CCATC	1 cut(s)	159
BceAI	ACGGC	1 cut(s)	22
BciT130I	CCWGG	1 cut(s)	34
BfaI	CTAG	1 cut(s)	266
BfmI	CTRYAG	1 cut(s)	77
BfuAI	ACCTGC	1 cut(s)	70
BisI	GCNGC	5 cut(s)	77, 240, 243, 246, 275
BlsI	GCNGC	5 cut(s)	78, 241, 244, 247, 276
Bme1390I	CCNGG	1 cut(s)	34
Bme18I	GGWCC	2 cut(s)	30, 82
BmeT110I	CYCGRG	1 cut(s)	122
BmgT120I	GGNCC	4 cut(s)	30, 82, 308, 309
BmiI	GGNNCC	3 cut(s)	205, 261, 310
BmrFI	CCNGG	1 cut(s)	34
BmsI	GCATC	1 cut(s)	152
BpmI	CTGGAG	2 cut(s)	81, 236
BsaJI	CCNNGG	1 cut(s)	123
BsaWI	WCCGGW	1 cut(s)	206
BsaXI	ACNNNNNCTCC	2 cut(s)	209, 239
Bsc4I	CCNNNNNNNGG	1 cut(s)	39
Bse1I	ACTGG	1 cut(s)	197
BseBI	CCWGG	1 cut(s)	34
BseDI	CCNNGG	1 cut(s)	123
BseLI	CCNNNNNNNGG	1 cut(s)	39
BseNI	ACTGG	1 cut(s)	197
BseSI	GKGCMC	1 cut(s)	312
BseXI	GCAGC	3 cut(s)	63, 251, 261
BsgI	GTGCAG	1 cut(s)	258
BshFI	GGCC	1 cut(s)	310
BshNI	GGYRCC	1 cut(s)	203
BsiHKCI	CYCGRG	1 cut(s)	122
BsiSI	CCGG	2 cut(s)	88, 207
BslFI	GGGAC	1 cut(s)	196
BslI	CCNNNNNNNGG	1 cut(s)	39
BsmFI	GGGAC	1 cut(s)	196
BsmI	GAATGC	1 cut(s)	20
BsnI	GGCC	1 cut(s)	310
BsoBI	CYCGRG	1 cut(s)	122
Bsp120I	GGGCCC	1 cut(s)	308
Bsp1286I	GDGCHC	1 cut(s)	312
Bsp143I	GATC	1 cut(s)	251
BspACI	CCGC	7 cut(s)	9, 85, 201, 229, 242, 245, 263
BspANI	GGCC	1 cut(s)	310
BspLI	GGNNCC	3 cut(s)	205, 261, 310
BspMAI	CTGCAG	1 cut(s)	81
BspMI	ACCTGC	1 cut(s)	70
BspT107I	GGYRCC	1 cut(s)	203
BsrI	ACTGG	1 cut(s)	197
BssECI	CCNNGG	1 cut(s)	123
BssMI	GATC	1 cut(s)	251
Bst2UI	CCWGG	1 cut(s)	34
BstHHI	GCGC	1 cut(s)	20
BstKTI	GATC	1 cut(s)	254
BstMBI	GATC	1 cut(s)	251
BstMWI	GCNNNNNNNGC	4 cut(s)	15, 245, 271, 280
BstNI	CCWGG	1 cut(s)	34
BstSCI	CCNGG	1 cut(s)	32
BstSFI	CTRYAG	1 cut(s)	77
BstSLI	GKGCMC	1 cut(s)	312
BstV1I	GCAGC	3 cut(s)	63, 251, 261
BsuRI	GGCC	1 cut(s)	310
BtsIMutI	CAGTG	1 cut(s)	190
BveI	ACCTGC	1 cut(s)	70
CfoI	GCGC	1 cut(s)	20
Cfr13I	GGNCC	4 cut(s)	30, 82, 308, 309
Csp6I	GTAC	2 cut(s)	170, 204
CviJI	RGCY	9 cut(s)	37, 59, 76, 118, 221, 260, 274, 310, 320
CviKI_1	RGCY	9 cut(s)	37, 59, 76, 118, 221, 260, 274, 310, 320
CviQI	GTAC	2 cut(s)	170, 204
DpnI	GATC	1 cut(s)	253
DpnII	GATC	1 cut(s)	251
EciI	GGCGGA	1 cut(s)	74
Eco24I	GRGCYC	1 cut(s)	312
Eco47I	GGWCC	2 cut(s)	30, 82
Eco88I	CYCGRG	1 cut(s)	122
EcoRII	CCWGG	1 cut(s)	32
EcoT38I	GRGCYC	1 cut(s)	312
FaiI	YATR	1 cut(s)	113
FaqI	GGGAC	1 cut(s)	196
FauI	CCCGC	1 cut(s)	222
Fnu4HI	GCNGC	5 cut(s)	77, 240, 243, 246, 275
FriOI	GRGCYC	1 cut(s)	312
Fsp4HI	GCNGC	5 cut(s)	77, 240, 243, 246, 275
FspBI	CTAG	1 cut(s)	266
GlaI	GCGC	1 cut(s)	19
GluI	GCNGC	5 cut(s)	77, 240, 243, 246, 275
GsuI	CTGGAG	2 cut(s)	81, 236
HaeIII	GGCC	1 cut(s)	310
HapII	CCGG	2 cut(s)	88, 207
HhaI	GCGC	1 cut(s)	20
Hin6I	GCGC	1 cut(s)	18
HinP1I	GCGC	1 cut(s)	18
HinfI	GANTC	2 cut(s)	91, 176
HpaII	CCGG	2 cut(s)	88, 207
HphI	GGTGA	1 cut(s)	23
Hpy188III	TCNNGA	1 cut(s)	122
Hpy99I	CGWCG	1 cut(s)	143
HpyCH4IV	ACGT	1 cut(s)	185
HpyCH4V	TGCA	3 cut(s)	79, 239, 277
HpyF10VI	GCNNNNNNNGC	4 cut(s)	15, 245, 271, 280
HpySE526I	ACGT	1 cut(s)	185
HspAI	GCGC	1 cut(s)	18
KpnI	GGTACC	1 cut(s)	207
Kzo9I	GATC	1 cut(s)	251
LmnI	GCTCC	1 cut(s)	265
Lsp1109I	GCAGC	3 cut(s)	63, 251, 261
LweI	GCATC	1 cut(s)	152
MaeI	CTAG	1 cut(s)	266
MaeII	ACGT	1 cut(s)	185
MalI	GATC	1 cut(s)	253
MboI	GATC	1 cut(s)	251
MboII	GAAGA	2 cut(s)	57, 93
MfeI	CAATTG	1 cut(s)	313
MhlI	GDGCHC	1 cut(s)	312
MluCI	AATT	1 cut(s)	313
MlyI	GAGTC	2 cut(s)	100, 185
MnlI	CCTC	4 cut(s)	7, 99, 118, 211
MslI	CAYNNNNRTG	1 cut(s)	25
MspA1I	CMGCKG	1 cut(s)	242
MspI	CCGG	2 cut(s)	88, 207
MspR9I	CCNGG	1 cut(s)	34
MunI	CAATTG	1 cut(s)	313
Mva1269I	GAATGC	1 cut(s)	20
MvaI	CCWGG	1 cut(s)	34
MwoI	GCNNNNNNNGC	4 cut(s)	15, 245, 271, 280
NdeII	GATC	1 cut(s)	251
NlaIV	GGNNCC	3 cut(s)	205, 261, 310
PctI	GAATGC	1 cut(s)	20
PflMI	CCANNNNNTGG	1 cut(s)	39
PkrI	GCNGC	5 cut(s)	78, 241, 244, 247, 276
PleI	GAGTC	2 cut(s)	99, 184
PpsI	GAGTC	2 cut(s)	99, 184
Psp6I	CCWGG	1 cut(s)	32
PspGI	CCWGG	1 cut(s)	32
PspN4I	GGNNCC	3 cut(s)	205, 261, 310
PspOMI	GGGCCC	1 cut(s)	308
PspPI	GGNCC	4 cut(s)	30, 82, 308, 309
PstI	CTGCAG	1 cut(s)	81
RsaI	GTAC	2 cut(s)	171, 205
RsaNI	GTAC	2 cut(s)	170, 204
RseI	CAYNNNNRTG	1 cut(s)	25
SatI	GCNGC	5 cut(s)	77, 240, 243, 246, 275
Sau3AI	GATC	1 cut(s)	251
Sau96I	GGNCC	4 cut(s)	30, 82, 308, 309
SchI	GAGTC	2 cut(s)	100, 185
ScrFI	CCNGG	1 cut(s)	34
SduI	GDGCHC	1 cut(s)	312
SetI	ASST	6 cut(s)	57, 78, 84, 129, 188, 271
SfaNI	GCATC	1 cut(s)	152
SfcI	CTRYAG	1 cut(s)	77
SinI	GGWCC	2 cut(s)	30, 82
SmiMI	CAYNNNNRTG	1 cut(s)	25
Sse9I	AATT	1 cut(s)	313
SsiI	CCGC	7 cut(s)	9, 85, 201, 229, 242, 245, 263
SspMI	CTAG	1 cut(s)	266
StyD4I	CCNGG	1 cut(s)	32
TaiI	ACGT	1 cut(s)	188
TaqI	TCGA	1 cut(s)	104
TasI	AATT	1 cut(s)	313
TauI	GCSGC	2 cut(s)	245, 248
TscAI	CASTG	1 cut(s)	197
TseI	GCWGC	3 cut(s)	76, 239, 274
TspRI	CASTG	1 cut(s)	197
Van91I	CCANNNNNTGG	1 cut(s)	39
VpaK11BI	GGWCC	2 cut(s)	30, 82
XspI	CTAG	1 cut(s)	266

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.