RLG00000001471

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0013765
Physical Location & Seq
Reverse (-)
16000565 .. 16001086
522 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001471

Sequence Viewer

Length: 417 bp
ATGGCTAAGAGCCTTTGTACCTGCCTCCATCTCAGATGGAGAAAAATTCCAGCCCTTCCCCTGGGGTTGCGGCTATTGAGTACTTTTCAGTCCATCCTCCCTGGTTTCTCCTTTAAGTTGAGATCGAGGGCTGTCTCTCCTTCTCAATTTGGTTCGTATCAGGGTTTGAGGCTGAGCTTCGTTTGGCTGCCAACTGAACTGCGAGGGCGCATTCAAATGGACCTGGCTTTGGAGAAGAAGCAAGGTTGCTGGAGTTGTGGGGATGCTGCAGGTCTGCCGGAGTCTTACTTCTTCGAGGGCTATGTGGCTTCCGAGGTGTTTGCTGTTGTCGCATCTCTCCATTTTGGTCGTTTGTTGGTACGGGAGTCAGGGACGTTTCACTGGTTCCGCGGTCCCGGATTGCCGGAGGCTTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

139

Amino Acids

15.54

Weight (kDa)

9.69

Isoelectric Point (pI)

59.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 29, 260
AccII CGCG 1 cut(s) 390
AciI CCGC 3 cut(s) 70, 388, 390
AcsI RAATTY 1 cut(s) 45
AfaI GTAC 3 cut(s) 19, 82, 360
AfiI CCNNNNNNNGG 2 cut(s) 61, 229
AgsI TTSAA 1 cut(s) 215
AjnI CCWGG 3 cut(s) 60, 100, 222
AluBI AGCT 1 cut(s) 177
AluI AGCT 1 cut(s) 177
Alw26I GTCTC 1 cut(s) 139
ApeKI GCWGC 2 cut(s) 187, 266
ApoI RAATTY 1 cut(s) 45
AspLEI GCGC 1 cut(s) 210
AspS9I GGNCC 2 cut(s) 220, 392
AsuC2I CCSGG 1 cut(s) 396
AvaII GGWCC 2 cut(s) 220, 392
BaeI ACNNNNGTAYC 2 cut(s) 350, 383
BbvI GCAGC 2 cut(s) 174, 253
BccI CCATC 3 cut(s) 30, 36, 101
BcgI CGANNNNNNTGC 2 cut(s) 302, 336
BciT130I CCWGG 3 cut(s) 62, 102, 224
BcnI CCSGG 1 cut(s) 396
BcoDI GTCTC 1 cut(s) 139
BfmI CTRYAG 1 cut(s) 267
BfuAI ACCTGC 2 cut(s) 29, 260
BisI GCNGC 3 cut(s) 71, 188, 267
BlpI GCTNAGC 1 cut(s) 173
BlsI GCNGC 3 cut(s) 72, 189, 268
BmcAI AGTACT 1 cut(s) 82
Bme1390I CCNGG 4 cut(s) 62, 102, 224, 396
Bme18I GGWCC 2 cut(s) 220, 392
BmgT120I GGNCC 2 cut(s) 220, 392
BmiI GGNNCC 2 cut(s) 386, 394
BmrFI CCNGG 4 cut(s) 62, 102, 224, 396
BmsI GCATC 2 cut(s) 253, 341
BpmI CTGGAG 1 cut(s) 271
Bpu1102I GCTNAGC 1 cut(s) 173
BpuMI CCSGG 1 cut(s) 396
BsaJI CCNNGG 5 cut(s) 60, 61, 100, 312, 388
BsaXI ACNNNNNCTCC 1 cut(s) 398
Bsc4I CCNNNNNNNGG 2 cut(s) 61, 229
Bse1I ACTGG 1 cut(s) 386
BseBI CCWGG 3 cut(s) 62, 102, 224
BseDI CCNNGG 5 cut(s) 60, 61, 100, 312, 388
BseGI GGATG 2 cut(s) 93, 268
BseLI CCNNNNNNNGG 2 cut(s) 61, 229
BseMII CTCAG 2 cut(s) 46, 164
BseNI ACTGG 1 cut(s) 386
BseXI GCAGC 2 cut(s) 174, 253
Bsh1236I CGCG 1 cut(s) 390
BsiSI CCGG 3 cut(s) 278, 396, 404
BslFI GGGAC 2 cut(s) 378, 385
BslI CCNNNNNNNGG 2 cut(s) 61, 229
BsmAI GTCTC 1 cut(s) 139
BsmFI GGGAC 2 cut(s) 378, 385
BsmI GAATGC 1 cut(s) 210
Bsp143I GATC 1 cut(s) 122
Bsp1720I GCTNAGC 1 cut(s) 173
BspACI CCGC 3 cut(s) 70, 388, 390
BspCNI CTCAG 2 cut(s) 45, 165
BspFNI CGCG 1 cut(s) 390
BspLI GGNNCC 2 cut(s) 386, 394
BspMAI CTGCAG 1 cut(s) 271
BspMI ACCTGC 2 cut(s) 29, 260
BsrI ACTGG 1 cut(s) 386
BssECI CCNNGG 5 cut(s) 60, 61, 100, 312, 388
BssMI GATC 1 cut(s) 122
Bst2UI CCWGG 3 cut(s) 62, 102, 224
BstDEI CTNAG 3 cut(s) 6, 32, 173
BstDSI CCRYGG 1 cut(s) 388
BstF5I GGATG 2 cut(s) 93, 268
BstFNI CGCG 1 cut(s) 390
BstHHI GCGC 1 cut(s) 210
BstKTI GATC 1 cut(s) 125
BstMAI GTCTC 1 cut(s) 139
BstMBI GATC 1 cut(s) 122
BstMWI GCNNNNNNNGC 1 cut(s) 329
BstNI CCWGG 3 cut(s) 62, 102, 224
BstSCI CCNGG 4 cut(s) 60, 100, 222, 394
BstSFI CTRYAG 1 cut(s) 267
BstUI CGCG 1 cut(s) 390
BstV1I GCAGC 2 cut(s) 174, 253
BtgI CCRYGG 1 cut(s) 388
BtsCI GGATG 2 cut(s) 93, 268
BtsIMutI CAGTG 1 cut(s) 379
BveI ACCTGC 2 cut(s) 29, 260
CfoI GCGC 1 cut(s) 210
Cfr13I GGNCC 2 cut(s) 220, 392
Cfr42I CCGCGG 1 cut(s) 391
Csp6I GTAC 3 cut(s) 18, 81, 359
CviQI GTAC 3 cut(s) 18, 81, 359
DdeI CTNAG 3 cut(s) 6, 32, 173
DpnI GATC 1 cut(s) 124
DpnII GATC 1 cut(s) 122
Eco47I GGWCC 2 cut(s) 220, 392
EcoRII CCWGG 3 cut(s) 60, 100, 222
FaiI YATR 1 cut(s) 303
FaqI GGGAC 2 cut(s) 378, 385
Fnu4HI GCNGC 3 cut(s) 71, 188, 267
FokI GGATG 2 cut(s) 80, 275
Fsp4HI GCNGC 3 cut(s) 71, 188, 267
GlaI GCGC 1 cut(s) 209
GluI GCNGC 3 cut(s) 71, 188, 267
GsuI CTGGAG 1 cut(s) 271
HapII CCGG 3 cut(s) 278, 396, 404
HhaI GCGC 1 cut(s) 210
Hin6I GCGC 1 cut(s) 208
HinP1I GCGC 1 cut(s) 208
HinfI GANTC 2 cut(s) 281, 365
HpaII CCGG 3 cut(s) 278, 396, 404
Hpy188I TCNGA 2 cut(s) 35, 313
HpyAV CCTTC 2 cut(s) 65, 150
HpyCH4IV ACGT 1 cut(s) 374
HpyCH4V TGCA 1 cut(s) 269
HpyF10VI GCNNNNNNNGC 1 cut(s) 329
HpyF3I CTNAG 3 cut(s) 6, 32, 173
HpySE526I ACGT 1 cut(s) 374
HspAI GCGC 1 cut(s) 208
KspI CCGCGG 1 cut(s) 391
Kzo9I GATC 1 cut(s) 122
Lsp1109I GCAGC 2 cut(s) 174, 253
LweI GCATC 2 cut(s) 253, 341
MaeII ACGT 1 cut(s) 374
MalI GATC 1 cut(s) 124
MboI GATC 1 cut(s) 122
MboII GAAGA 2 cut(s) 247, 283
MluCI AATT 2 cut(s) 45, 146
MlyI GAGTC 2 cut(s) 290, 374
MnlI CCTC 8 cut(s) 35, 107, 120, 162, 197, 289, 307, 400
MseI TTAA 1 cut(s) 114
MslI CAYNNNNRTG 1 cut(s) 215
MspA1I CMGCKG 1 cut(s) 390
MspI CCGG 3 cut(s) 278, 396, 404
MspR9I CCNGG 4 cut(s) 62, 102, 224, 396
Mva1269I GAATGC 1 cut(s) 210
MvaI CCWGG 3 cut(s) 62, 102, 224
MvnI CGCG 1 cut(s) 390
MwoI GCNNNNNNNGC 1 cut(s) 329
NciI CCSGG 1 cut(s) 396
NdeII GATC 1 cut(s) 122
NlaIV GGNNCC 2 cut(s) 386, 394
PasI CCCWGGG 1 cut(s) 61
PctI GAATGC 1 cut(s) 210
PfoI TCCNGGA 1 cut(s) 394
PkrI GCNGC 3 cut(s) 72, 189, 268
PleI GAGTC 2 cut(s) 289, 373
PpsI GAGTC 2 cut(s) 289, 373
Psp6I CCWGG 3 cut(s) 60, 100, 222
PspGI CCWGG 3 cut(s) 60, 100, 222
PspN4I GGNNCC 2 cut(s) 386, 394
PspPI GGNCC 2 cut(s) 220, 392
PstI CTGCAG 1 cut(s) 271
RsaI GTAC 3 cut(s) 19, 82, 360
RsaNI GTAC 3 cut(s) 18, 81, 359
RseI CAYNNNNRTG 1 cut(s) 215
SacII CCGCGG 1 cut(s) 391
SaqAI TTAA 1 cut(s) 114
SatI GCNGC 3 cut(s) 71, 188, 267
Sau3AI GATC 1 cut(s) 122
Sau96I GGNCC 2 cut(s) 220, 392
ScaI AGTACT 1 cut(s) 82
SchI GAGTC 2 cut(s) 290, 374
ScrFI CCNGG 4 cut(s) 62, 102, 224, 396
SetI ASST 7 cut(s) 23, 179, 225, 247, 274, 318, 377
SfaNI GCATC 2 cut(s) 253, 341
SfcI CTRYAG 1 cut(s) 267
Sfr303I CCGCGG 1 cut(s) 391
SgrBI CCGCGG 1 cut(s) 391
SinI GGWCC 2 cut(s) 220, 392
SmiMI CAYNNNNRTG 1 cut(s) 215
Sse9I AATT 2 cut(s) 45, 146
SsiI CCGC 3 cut(s) 70, 388, 390
StyD4I CCNGG 4 cut(s) 60, 100, 222, 394
TaiI ACGT 1 cut(s) 377
TaqI TCGA 2 cut(s) 125, 294
TasI AATT 2 cut(s) 45, 146
TatI WGTACW 1 cut(s) 80
TauI GCSGC 1 cut(s) 73
Tru1I TTAA 1 cut(s) 114
Tru9I TTAA 1 cut(s) 114
TscAI CASTG 1 cut(s) 386
TseI GCWGC 2 cut(s) 187, 266
TspRI CASTG 1 cut(s) 386
VpaK11BI GGWCC 2 cut(s) 220, 392
XapI RAATTY 1 cut(s) 45
ZrmI AGTACT 1 cut(s) 82
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.