Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8182758.1

Orthogroup ID

OG0013765

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 591

Gene Structure 591 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8182758.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

actgatccgaaattgctagcttatactgctgtcaatgtgactcttgagttcaccaaacaatctctagagacagtgaagcggtttcaagagattggtggtttgaatcctgttttagcttcaacaatggaggcatgtgcaaatgaacttactgtcgctatggacgacatccagaattccaaagagggattggaggatcatgtaacagaaggctctgagcccaagcttgaaatgggtaatactcaggcgtggcttaatgccggactaacaatagagcagaaatgctttgatggctttgctgtagatcatcttgatgggaaagtggagacccttactcgcagaaatattatgaaagtcgcgcaattaacaagcaatgccgtgcaactcctcagccactatgcattatctaaagttacatatccatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PMEI

Protein Analysis

140

Amino Acids

15.4

Weight (kDa)

4.88

Isoelectric Point (pI)

41.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013765)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0072251 RchiOBHm_Chr7g0213171
rosa_laevigata	RLG00000001471 RLG00000002827 RLG00000021574 RLG00000033882
rosa_multiflora	Rmu_co8182758.1_g000001 Rmu_sc0028836.1_g000001 Rmu_sc0032877.1_g000003 Rmu_ssc0000084.1_g000011
rosa_roxburghii	Rroxscaffold_4G00300480 Rroxscaffold_5G00332980
rosa_rugosa	Rorug07G0139900
rosa_samantha	Rh7AG271600 Rh7BG267300 Rh7CG290900 Rh7DG279700
rosa_wichuraiana	Rw7G023570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	356
AciI	CCGC	1 cut(s)	79
AclWI	GGATC	1 cut(s)	201
AcsI	RAATTY	1 cut(s)	172
AgsI	TTSAA	4 cut(s)	86, 103, 120, 227
AluBI	AGCT	3 cut(s)	20, 116, 223
AluI	AGCT	3 cut(s)	20, 116, 223
Alw26I	GTCTC	2 cut(s)	62, 317
AlwI	GGATC	1 cut(s)	201
ApoI	RAATTY	1 cut(s)	172
AspLEI	GCGC	1 cut(s)	358
AsuHPI	GGTGA	1 cut(s)	43
AsuNHI	GCTAGC	1 cut(s)	16
BanII	GRGCYC	1 cut(s)	219
BbvCI	CCTCAGC	1 cut(s)	386
BccI	CCATC	2 cut(s)	281, 305
BceAI	ACGGC	1 cut(s)	359
BcoDI	GTCTC	2 cut(s)	62, 317
BfaI	CTAG	2 cut(s)	17, 65
BfmI	CTRYAG	1 cut(s)	297
BmtI	GCTAGC	1 cut(s)	20
Bpu10I	CCTNAGC	1 cut(s)	386
BpuEI	CTTGAG	1 cut(s)	65
BsaI	GGTCTC	1 cut(s)	317
Bse3DI	GCAATG	1 cut(s)	376
BseGI	GGATG	1 cut(s)	165
BseMI	GCAATG	1 cut(s)	376
BseMII	CTCAG	3 cut(s)	204, 254, 400
BseRI	GAGGAG	1 cut(s)	374
Bsh1236I	CGCG	1 cut(s)	356
BsiSI	CCGG	1 cut(s)	258
BsmAI	GTCTC	2 cut(s)	62, 317
Bso31I	GGTCTC	1 cut(s)	317
Bsp1286I	GDGCHC	1 cut(s)	219
Bsp143I	GATC	3 cut(s)	4, 193, 301
BspACI	CCGC	1 cut(s)	79
BspCNI	CTCAG	3 cut(s)	205, 253, 399
BspFNI	CGCG	1 cut(s)	356
BspOI	GCTAGC	1 cut(s)	20
BspPI	GGATC	1 cut(s)	201
BspTNI	GGTCTC	1 cut(s)	317
BsrDI	GCAATG	1 cut(s)	376
BssMI	GATC	3 cut(s)	4, 193, 301
Bst4CI	ACNGT	2 cut(s)	73, 151
BstC8I	GCNNGC	1 cut(s)	18
BstDEI	CTNAG	3 cut(s)	213, 240, 386
BstF5I	GGATG	1 cut(s)	165
BstFNI	CGCG	1 cut(s)	356
BstHHI	GCGC	1 cut(s)	358
BstKTI	GATC	3 cut(s)	7, 196, 304
BstMAI	GTCTC	2 cut(s)	62, 317
BstMBI	GATC	3 cut(s)	4, 193, 301
BstMWI	GCNNNNNNNGC	2 cut(s)	26, 288
BstNSI	RCATGY	1 cut(s)	135
BstSFI	CTRYAG	1 cut(s)	297
BstUI	CGCG	1 cut(s)	356
BtsCI	GGATG	1 cut(s)	165
BtsIMutI	CAGTG	1 cut(s)	78
Cac8I	GCNNGC	1 cut(s)	18
CfoI	GCGC	1 cut(s)	358
CviAII	CATG	2 cut(s)	132, 197
CviJI	RGCY	8 cut(s)	20, 116, 210, 217, 223, 250, 291, 390
CviKI_1	RGCY	8 cut(s)	20, 116, 210, 217, 223, 250, 291, 390
DdeI	CTNAG	3 cut(s)	213, 240, 386
DpnI	GATC	3 cut(s)	6, 195, 303
DpnII	GATC	3 cut(s)	4, 193, 301
Eco24I	GRGCYC	1 cut(s)	219
Eco31I	GGTCTC	1 cut(s)	317
EcoRI	GAATTC	1 cut(s)	172
EcoT22I	ATGCAT	1 cut(s)	400
EcoT38I	GRGCYC	1 cut(s)	219
FaeI	CATG	2 cut(s)	135, 200
FaiI	YATR	8 cut(s)	24, 133, 158, 198, 347, 396, 415, 421
FatI	CATG	2 cut(s)	131, 196
FokI	GGATG	1 cut(s)	152
FriOI	GRGCYC	1 cut(s)	219
FspBI	CTAG	2 cut(s)	17, 65
GlaI	GCGC	1 cut(s)	357
HapII	CCGG	1 cut(s)	258
HhaI	GCGC	1 cut(s)	358
Hin1II	CATG	2 cut(s)	135, 200
Hin6I	GCGC	1 cut(s)	356
HinP1I	GCGC	1 cut(s)	356
HindIII	AAGCTT	1 cut(s)	221
HinfI	GANTC	2 cut(s)	40, 103
HpaII	CCGG	1 cut(s)	258
HphI	GGTGA	1 cut(s)	43
Hpy166II	GTNNAC	1 cut(s)	51
Hpy188I	TCNGA	2 cut(s)	9, 214
Hpy188III	TCNNGA	5 cut(s)	44, 65, 86, 169, 308
Hpy8I	GTNNAC	1 cut(s)	51
HpyAV	CCTTC	1 cut(s)	200
HpyCH4III	ACNGT	2 cut(s)	73, 151
HpyCH4V	TGCA	3 cut(s)	137, 379, 398
HpyF10VI	GCNNNNNNNGC	2 cut(s)	26, 288
HpyF3I	CTNAG	3 cut(s)	213, 240, 386
Hsp92II	CATG	2 cut(s)	135, 200
HspAI	GCGC	1 cut(s)	356
Kzo9I	GATC	3 cut(s)	4, 193, 301
LpnPI	CCDG	4 cut(s)	120, 182, 227, 271
MaeI	CTAG	2 cut(s)	17, 65
MaeIII	GTNAC	3 cut(s)	37, 199, 409
MalI	GATC	3 cut(s)	6, 195, 303
MboI	GATC	3 cut(s)	4, 193, 301
MhlI	GDGCHC	1 cut(s)	219
MluCI	AATT	3 cut(s)	11, 172, 359
MlyI	GAGTC	1 cut(s)	34
MnlI	CCTC	4 cut(s)	121, 175, 184, 395
Mph1103I	ATGCAT	1 cut(s)	400
MseI	TTAA	2 cut(s)	252, 362
MslI	CAYNNNNRTG	1 cut(s)	309
MspI	CCGG	1 cut(s)	258
MvnI	CGCG	1 cut(s)	356
MwoI	GCNNNNNNNGC	2 cut(s)	26, 288
NdeII	GATC	3 cut(s)	4, 193, 301
NheI	GCTAGC	1 cut(s)	16
NlaIII	CATG	2 cut(s)	135, 200
NmuCI	GTSAC	1 cut(s)	37
NsiI	ATGCAT	1 cut(s)	400
NspI	RCATGY	1 cut(s)	135
PcsI	WCGNNNNNNNCGW	1 cut(s)	159
PfeI	GAWTC	1 cut(s)	103
PleI	GAGTC	1 cut(s)	34
PpsI	GAGTC	1 cut(s)	34
RseI	CAYNNNNRTG	1 cut(s)	309
SaqAI	TTAA	2 cut(s)	252, 362
Sau3AI	GATC	3 cut(s)	4, 193, 301
SchI	GAGTC	1 cut(s)	34
SduI	GDGCHC	1 cut(s)	219
SetI	ASST	3 cut(s)	22, 118, 225
SfcI	CTRYAG	1 cut(s)	297
SmiMI	CAYNNNNRTG	1 cut(s)	309
SmlI	CTYRAG	1 cut(s)	44
SmoI	CTYRAG	1 cut(s)	44
Sse9I	AATT	3 cut(s)	11, 172, 359
SsiI	CCGC	1 cut(s)	79
SspI	AATATT	1 cut(s)	343
SspMI	CTAG	2 cut(s)	17, 65
TaaI	ACNGT	2 cut(s)	73, 151
TasI	AATT	3 cut(s)	11, 172, 359
TfiI	GAWTC	1 cut(s)	103
Tru1I	TTAA	2 cut(s)	252, 362
Tru9I	TTAA	2 cut(s)	252, 362
TscAI	CASTG	1 cut(s)	78
TseFI	GTSAC	1 cut(s)	37
Tsp45I	GTSAC	1 cut(s)	37
TspDTI	ATGAA	2 cut(s)	156, 362
TspRI	CASTG	1 cut(s)	78
XapI	RAATTY	1 cut(s)	172
XbaI	TCTAGA	1 cut(s)	64
XceI	RCATGY	1 cut(s)	135
XcmI	CCANNNNNNNNNTGG	2 cut(s)	184, 226
XspI	CTAG	2 cut(s)	17, 65
Zsp2I	ATGCAT	1 cut(s)	400

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.