Rroxscaffold_4G00300480

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0013765
Physical Location & Seq
Reverse (-)
20863670 .. 20866228
2559 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00300480.1

Sequence Viewer

Length: 306 bp
ATGGACCAGGCTATGGAGAAGAAGCAAGGTGGCTGGAGTTGTGGGGACGCTGTAGGTCCGCCGCAGTCTTACTTCTTTGAGGGATATGTGGCTTCCCGAGGTGTTTGCTATTGTCGCATCTCTCCATTTGGGTTGTCTCGTTGGTATGGGAGTCGGGGACGTTTCATTGGTTACGCGGTGCTGACTGCCGGAGGCTTGGCGGCGGGTTGGTGCGACGGCATCAAGATCACGAGCTCGCTAGACCTTCCAACGCTCTTTTTGATCAACAACATCTACTTACTATTACGTTCATATAATACATCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

101

Amino Acids

11.06

Weight (kDa)

8.76

Isoelectric Point (pI)

56.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 13
AccII CGCG 1 cut(s) 176
AciI CCGC 5 cut(s) 59, 62, 176, 200, 203
AfiI CCNNNNNNNGG 1 cut(s) 13
AjnI CCWGG 1 cut(s) 6
AluBI AGCT 1 cut(s) 234
AluI AGCT 1 cut(s) 234
Alw21I GWGCWC 1 cut(s) 236
Alw26I GTCTC 1 cut(s) 141
Ama87I CYCGRG 1 cut(s) 96
AspS9I GGNCC 2 cut(s) 4, 56
AvaI CYCGRG 1 cut(s) 96
AvaII GGWCC 2 cut(s) 4, 56
BanII GRGCYC 1 cut(s) 236
BauI CACGAG 1 cut(s) 229
Bbv12I GWGCWC 1 cut(s) 236
BceAI ACGGC 1 cut(s) 232
BcgI CGANNNNNNTGC 2 cut(s) 87, 121
BciT130I CCWGG 1 cut(s) 8
BclI TGATCA 1 cut(s) 261
BcoDI GTCTC 1 cut(s) 141
BfaI CTAG 1 cut(s) 239
BfmI CTRYAG 1 cut(s) 51
BisI GCNGC 2 cut(s) 62, 201
BlsI GCNGC 2 cut(s) 63, 202
Bme1390I CCNGG 1 cut(s) 8
Bme18I GGWCC 2 cut(s) 4, 56
BmeT110I CYCGRG 1 cut(s) 96
BmgT120I GGNCC 2 cut(s) 4, 56
BmrFI CCNGG 1 cut(s) 8
BmsI GCATC 2 cut(s) 126, 228
BpmI CTGGAG 1 cut(s) 55
BsaJI CCNNGG 1 cut(s) 97
Bsc4I CCNNNNNNNGG 1 cut(s) 13
BseBI CCWGG 1 cut(s) 8
BseDI CCNNGG 1 cut(s) 97
BseLI CCNNNNNNNGG 1 cut(s) 13
Bsh1236I CGCG 1 cut(s) 176
BsiHKAI GWGCWC 1 cut(s) 236
BsiHKCI CYCGRG 1 cut(s) 96
BsiSI CCGG 1 cut(s) 189
BslFI GGGAC 2 cut(s) 59, 171
BslI CCNNNNNNNGG 1 cut(s) 13
BsmAI GTCTC 1 cut(s) 141
BsmFI GGGAC 2 cut(s) 59, 171
BsoBI CYCGRG 1 cut(s) 96
Bsp1286I GDGCHC 1 cut(s) 236
Bsp143I GATC 2 cut(s) 225, 261
BspACI CCGC 5 cut(s) 59, 62, 176, 200, 203
BspFNI CGCG 1 cut(s) 176
BssECI CCNNGG 1 cut(s) 97
BssMI GATC 2 cut(s) 225, 261
BssSI CACGAG 1 cut(s) 229
Bst2BI CACGAG 1 cut(s) 229
Bst2UI CCWGG 1 cut(s) 8
BstC8I GCNNGC 1 cut(s) 236
BstFNI CGCG 1 cut(s) 176
BstKTI GATC 2 cut(s) 228, 264
BstMAI GTCTC 1 cut(s) 141
BstMBI GATC 2 cut(s) 225, 261
BstMWI GCNNNNNNNGC 1 cut(s) 114
BstNI CCWGG 1 cut(s) 8
BstSCI CCNGG 1 cut(s) 6
BstSFI CTRYAG 1 cut(s) 51
BstUI CGCG 1 cut(s) 176
Cac8I GCNNGC 1 cut(s) 236
Cfr13I GGNCC 2 cut(s) 4, 56
CseI GACGC 1 cut(s) 56
CviJI RGCY 5 cut(s) 11, 33, 92, 195, 234
CviKI_1 RGCY 5 cut(s) 11, 33, 92, 195, 234
DpnI GATC 2 cut(s) 227, 263
DpnII GATC 2 cut(s) 225, 261
EciI GGCGGA 1 cut(s) 48
Ecl136II GAGCTC 1 cut(s) 234
Eco24I GRGCYC 1 cut(s) 236
Eco47I GGWCC 2 cut(s) 4, 56
Eco53kI GAGCTC 1 cut(s) 234
Eco88I CYCGRG 1 cut(s) 96
EcoICRI GAGCTC 1 cut(s) 234
EcoRII CCWGG 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 236
FaiI YATR 5 cut(s) 14, 87, 147, 292, 294
FaqI GGGAC 2 cut(s) 59, 171
FauI CCCGC 1 cut(s) 196
FbaI TGATCA 1 cut(s) 261
Fnu4HI GCNGC 2 cut(s) 62, 201
FriOI GRGCYC 1 cut(s) 236
Fsp4HI GCNGC 2 cut(s) 62, 201
FspBI CTAG 1 cut(s) 239
GluI GCNGC 2 cut(s) 62, 201
GsuI CTGGAG 1 cut(s) 55
HapII CCGG 1 cut(s) 189
HgaI GACGC 1 cut(s) 56
HinfI GANTC 1 cut(s) 151
HpaII CCGG 1 cut(s) 189
Hpy188III TCNNGA 4 cut(s) 96, 223, 229, 303
Hpy99I CGWCG 1 cut(s) 218
HpyAV CCTTC 1 cut(s) 254
HpyCH4IV ACGT 2 cut(s) 160, 286
HpyF10VI GCNNNNNNNGC 1 cut(s) 114
HpySE526I ACGT 2 cut(s) 160, 286
Ksp22I TGATCA 1 cut(s) 261
Kzo9I GATC 2 cut(s) 225, 261
LpnPI CCDG 3 cut(s) 19, 20, 202
LweI GCATC 2 cut(s) 126, 228
MaeI CTAG 1 cut(s) 239
MaeII ACGT 2 cut(s) 160, 286
MaeIII GTNAC 1 cut(s) 170
MalI GATC 2 cut(s) 227, 263
MboI GATC 2 cut(s) 225, 261
MboII GAAGA 1 cut(s) 31
MhlI GDGCHC 1 cut(s) 236
MlyI GAGTC 1 cut(s) 160
MmeI TCCRAC 1 cut(s) 272
MnlI CCTC 3 cut(s) 73, 92, 185
MspI CCGG 1 cut(s) 189
MspR9I CCNGG 1 cut(s) 8
MvaI CCWGG 1 cut(s) 8
MvnI CGCG 1 cut(s) 176
MwoI GCNNNNNNNGC 1 cut(s) 114
NdeII GATC 2 cut(s) 225, 261
PflMI CCANNNNNTGG 1 cut(s) 13
PkrI GCNGC 2 cut(s) 63, 202
PleI GAGTC 1 cut(s) 159
PpsI GAGTC 1 cut(s) 159
Psp124BI GAGCTC 1 cut(s) 236
Psp6I CCWGG 1 cut(s) 6
PspGI CCWGG 1 cut(s) 6
PspPI GGNCC 2 cut(s) 4, 56
SacI GAGCTC 1 cut(s) 236
SatI GCNGC 2 cut(s) 62, 201
Sau3AI GATC 2 cut(s) 225, 261
Sau96I GGNCC 2 cut(s) 4, 56
SchI GAGTC 1 cut(s) 160
ScrFI CCNGG 1 cut(s) 8
SduI GDGCHC 1 cut(s) 236
SetI ASST 7 cut(s) 31, 58, 103, 163, 236, 246, 289
SfaNI GCATC 2 cut(s) 126, 228
SfcI CTRYAG 1 cut(s) 51
SinI GGWCC 2 cut(s) 4, 56
SsiI CCGC 5 cut(s) 59, 62, 176, 200, 203
SspMI CTAG 1 cut(s) 239
SstI GAGCTC 1 cut(s) 236
StyD4I CCNGG 1 cut(s) 6
TaiI ACGT 2 cut(s) 163, 289
TauI GCSGC 2 cut(s) 64, 203
TspDTI ATGAA 2 cut(s) 154, 279
Van91I CCANNNNNTGG 1 cut(s) 13
VpaK11BI GGWCC 2 cut(s) 4, 56
XspI CTAG 1 cut(s) 239
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.