Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0013765

Physical Location & Seq

Genomic Coordinates Reverse (-)

76491414 .. 76492427

Gene Structure 1014 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000021574

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGGTTAGGCGTCTTAGTACCTGCCTCCATCTCCAAGGGGGAAAAATTTTGGCCCTTCCTTTGGTGTTGCAGCTATTGAGGACGGTCCAGGCCCTCCTTTTCGTTTTTTTGCTTTTCTCCTTGATGTCGAGATTGAGAGCTTTCTCTCCTTCTCAATTTGTTTCGCTTCGTGTTTTGAGGTTGAATTCAGTTCGGCAGCCTACTGATCTGATGATTGCTGGTGGTTGGAGGATTTGGGATCCAGTGCTTTTCACGTTTCAACTGAGTTGGGATTGGATCGGGTTCAGATGGAGTCCATCCTCCATGGATGGAGGCGTGGGTGCTTGCAAATGGACAGTTGTGGGGAAGATGCAAGGCGGTCGGAGTCTTACTTCTCTGAGGGTTGTGTGGCTTCTTGTGTTGATGTCGTCAATATCTCTTTATCTGGGTCGTCTATTGGTAAGGGCAGGATTGAGTTCTGAAGAAGAATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

158

Amino Acids

17.7

Weight (kDa)

11.46

Isoelectric Point (pI)

69.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013765)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0072251 RchiOBHm_Chr7g0213171
rosa_laevigata	RLG00000001471 RLG00000002827 RLG00000021574 RLG00000033882
rosa_multiflora	Rmu_co8182758.1_g000001 Rmu_sc0028836.1_g000001 Rmu_sc0032877.1_g000003 Rmu_ssc0000084.1_g000011
rosa_roxburghii	Rroxscaffold_4G00300480 Rroxscaffold_5G00332980
rosa_rugosa	Rorug07G0139900
rosa_samantha	Rh7AG271600 Rh7BG267300 Rh7CG290900 Rh7DG279700
rosa_wichuraiana	Rw7G023570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	29
AciI	CCGC	1 cut(s)	357
AclWI	GGATC	3 cut(s)	233, 246, 284
AcsI	RAATTY	2 cut(s)	45, 184
AcyI	GRCGYC	1 cut(s)	10
AfaI	GTAC	1 cut(s)	19
AfiI	CCNNNNNNNGG	1 cut(s)	61
AgsI	TTSAA	2 cut(s)	184, 260
AjnI	CCWGG	1 cut(s)	87
AluBI	AGCT	2 cut(s)	73, 140
AluI	AGCT	2 cut(s)	73, 140
AlwI	GGATC	3 cut(s)	233, 246, 284
AoxI	GGCC	2 cut(s)	51, 90
ApeKI	GCWGC	2 cut(s)	70, 196
ApoI	RAATTY	2 cut(s)	45, 184
AspS9I	GGNCC	3 cut(s)	52, 85, 91
AvaII	GGWCC	1 cut(s)	85
BamHI	GGATCC	1 cut(s)	238
BbvI	GCAGC	2 cut(s)	82, 208
BccI	CCATC	4 cut(s)	36, 282, 302, 304
BcgI	CGANNNNNNTGC	2 cut(s)	341, 375
BciT130I	CCWGG	1 cut(s)	89
BfuAI	ACCTGC	1 cut(s)	29
BisI	GCNGC	2 cut(s)	71, 197
BlsI	GCNGC	2 cut(s)	72, 198
Bme1390I	CCNGG	1 cut(s)	89
Bme18I	GGWCC	1 cut(s)	85
BmgT120I	GGNCC	3 cut(s)	52, 85, 91
BmiI	GGNNCC	1 cut(s)	240
BmrFI	CCNGG	1 cut(s)	89
BmsI	GCATC	1 cut(s)	339
BsaHI	GRCGYC	1 cut(s)	10
BsaJI	CCNNGG	2 cut(s)	34, 303
Bsc4I	CCNNNNNNNGG	1 cut(s)	61
Bse1I	ACTGG	1 cut(s)	242
BseBI	CCWGG	1 cut(s)	89
BseDI	CCNNGG	2 cut(s)	34, 303
BseGI	GGATG	2 cut(s)	296, 313
BseLI	CCNNNNNNNGG	1 cut(s)	61
BseMII	CTCAG	2 cut(s)	254, 368
BseNI	ACTGG	1 cut(s)	242
BseXI	GCAGC	2 cut(s)	82, 208
Bsh1285I	CGRYCG	1 cut(s)	361
BshFI	GGCC	2 cut(s)	53, 92
BsiEI	CGRYCG	1 cut(s)	361
BslI	CCNNNNNNNGG	1 cut(s)	61
BsnI	GGCC	2 cut(s)	53, 92
Bsp143I	GATC	3 cut(s)	205, 238, 276
Bsp19I	CCATGG	1 cut(s)	303
BspACI	CCGC	1 cut(s)	357
BspANI	GGCC	2 cut(s)	53, 92
BspCNI	CTCAG	2 cut(s)	255, 369
BspHI	TCATGA	1 cut(s)	470
BspLI	GGNNCC	1 cut(s)	240
BspMI	ACCTGC	1 cut(s)	29
BspPI	GGATC	3 cut(s)	233, 246, 284
BsrI	ACTGG	1 cut(s)	242
BssECI	CCNNGG	2 cut(s)	34, 303
BssMI	GATC	3 cut(s)	205, 238, 276
BssNI	GRCGYC	1 cut(s)	10
BssT1I	CCWWGG	2 cut(s)	34, 303
Bst2UI	CCWGG	1 cut(s)	89
Bst4CI	ACNGT	2 cut(s)	85, 337
BstACI	GRCGYC	1 cut(s)	10
BstC8I	GCNNGC	1 cut(s)	325
BstDEI	CTNAG	3 cut(s)	14, 263, 377
BstDSI	CCRYGG	1 cut(s)	303
BstF5I	GGATG	2 cut(s)	296, 313
BstKTI	GATC	3 cut(s)	208, 241, 279
BstMBI	GATC	3 cut(s)	205, 238, 276
BstMCI	CGRYCG	1 cut(s)	361
BstNI	CCWGG	1 cut(s)	89
BstSCI	CCNGG	1 cut(s)	87
BstV1I	GCAGC	2 cut(s)	82, 208
BstX2I	RGATCY	1 cut(s)	238
BstYI	RGATCY	1 cut(s)	238
BsuRI	GGCC	2 cut(s)	53, 92
BtgI	CCRYGG	1 cut(s)	303
BtsCI	GGATG	2 cut(s)	296, 313
BtsIMutI	CAGTG	1 cut(s)	249
BveI	ACCTGC	1 cut(s)	29
Cac8I	GCNNGC	1 cut(s)	325
CciI	TCATGA	1 cut(s)	470
Cfr13I	GGNCC	3 cut(s)	52, 85, 91
Csp6I	GTAC	1 cut(s)	18
CviAII	CATG	2 cut(s)	304, 471
CviJI	RGCY	6 cut(s)	53, 73, 92, 140, 199, 391
CviKI_1	RGCY	6 cut(s)	53, 73, 92, 140, 199, 391
CviQI	GTAC	1 cut(s)	18
DdeI	CTNAG	3 cut(s)	14, 263, 377
DpnI	GATC	3 cut(s)	207, 240, 278
DpnII	GATC	3 cut(s)	205, 238, 276
Eco130I	CCWWGG	2 cut(s)	34, 303
Eco47I	GGWCC	1 cut(s)	85
EcoO109I	RGGNCCY	1 cut(s)	91
EcoRI	GAATTC	1 cut(s)	184
EcoRII	CCWGG	1 cut(s)	87
EcoT14I	CCWWGG	2 cut(s)	34, 303
ErhI	CCWWGG	2 cut(s)	34, 303
FaeI	CATG	2 cut(s)	307, 474
FaiI	YATR	2 cut(s)	305, 472
FatI	CATG	2 cut(s)	303, 470
Fnu4HI	GCNGC	2 cut(s)	71, 197
FokI	GGATG	2 cut(s)	283, 320
Fsp4HI	GCNGC	2 cut(s)	71, 197
GluI	GCNGC	2 cut(s)	71, 197
HaeIII	GGCC	2 cut(s)	53, 92
Hin1I	GRCGYC	1 cut(s)	10
Hin1II	CATG	2 cut(s)	307, 474
HinfI	GANTC	3 cut(s)	292, 364, 467
Hpy188I	TCNGA	5 cut(s)	210, 287, 363, 378, 460
Hpy188III	TCNNGA	2 cut(s)	129, 471
HpyAV	CCTTC	2 cut(s)	65, 159
HpyCH4III	ACNGT	2 cut(s)	85, 337
HpyCH4IV	ACGT	1 cut(s)	254
HpyCH4V	TGCA	3 cut(s)	70, 327, 352
HpyF3I	CTNAG	3 cut(s)	14, 263, 377
HpySE526I	ACGT	1 cut(s)	254
Hsp92I	GRCGYC	1 cut(s)	10
Hsp92II	CATG	2 cut(s)	307, 474
Kzo9I	GATC	3 cut(s)	205, 238, 276
LpnPI	CCDG	7 cut(s)	34, 74, 101, 204, 255, 410, 432
Lsp1109I	GCAGC	2 cut(s)	82, 208
LweI	GCATC	1 cut(s)	339
MaeII	ACGT	1 cut(s)	254
MalI	GATC	3 cut(s)	207, 240, 278
MboI	GATC	3 cut(s)	205, 238, 276
MboII	GAAGA	2 cut(s)	358, 473
MflI	RGATCY	1 cut(s)	238
MluCI	AATT	3 cut(s)	45, 155, 184
MlyI	GAGTC	2 cut(s)	301, 373
MmeI	TCCRAC	2 cut(s)	206, 341
MnlI	CCTC	8 cut(s)	35, 72, 104, 171, 222, 305, 310, 372
MspR9I	CCNGG	1 cut(s)	89
MvaI	CCWGG	1 cut(s)	89
NcoI	CCATGG	1 cut(s)	303
NdeII	GATC	3 cut(s)	205, 238, 276
NlaIII	CATG	2 cut(s)	307, 474
NlaIV	GGNNCC	1 cut(s)	240
PagI	TCATGA	1 cut(s)	470
PfeI	GAWTC	1 cut(s)	467
PkrI	GCNGC	2 cut(s)	72, 198
PleI	GAGTC	2 cut(s)	300, 372
PpsI	GAGTC	2 cut(s)	300, 372
Psp6I	CCWGG	1 cut(s)	87
PspGI	CCWGG	1 cut(s)	87
PspN4I	GGNNCC	1 cut(s)	240
PspPI	GGNCC	3 cut(s)	52, 85, 91
PsuI	RGATCY	1 cut(s)	238
RsaI	GTAC	1 cut(s)	19
RsaNI	GTAC	1 cut(s)	18
SatI	GCNGC	2 cut(s)	71, 197
Sau3AI	GATC	3 cut(s)	205, 238, 276
Sau96I	GGNCC	3 cut(s)	52, 85, 91
SchI	GAGTC	2 cut(s)	301, 373
ScrFI	CCNGG	1 cut(s)	89
SetI	ASST	5 cut(s)	23, 75, 142, 182, 257
SfaNI	GCATC	1 cut(s)	339
SinI	GGWCC	1 cut(s)	85
Sse9I	AATT	3 cut(s)	45, 155, 184
SsiI	CCGC	1 cut(s)	357
StyD4I	CCNGG	1 cut(s)	87
StyI	CCWWGG	2 cut(s)	34, 303
TaaI	ACNGT	2 cut(s)	85, 337
TaiI	ACGT	1 cut(s)	257
TaqI	TCGA	1 cut(s)	128
TasI	AATT	3 cut(s)	45, 155, 184
TfiI	GAWTC	1 cut(s)	467
TscAI	CASTG	1 cut(s)	249
TseI	GCWGC	2 cut(s)	70, 196
TspRI	CASTG	1 cut(s)	249
VpaK11BI	GGWCC	1 cut(s)	85
XapI	RAATTY	2 cut(s)	45, 184

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.