Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0013765

Physical Location & Seq

Genomic Coordinates Forward (+)

33688335 .. 33690390

Gene Structure 2056 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000033882

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGCATGGATGGCGGCGAGGGTTCTTGCAAATGGACCGGGATGTAGAGAAAATGCACGGCTGTCGGAGTTGTGGGGAAGATGCAGGGCTGTTGGAGTCTTACTTCTCCGAGGGCTGTGTGGCTTCCAGTGTTGATGTATTCGACATCTCTTTATCTGGGTCATCTATTGGTAAGGGAATCAGGGCCCGACCCGGTTTCAGTTCACCTCGACGATCAGTAGCTCATCTGCATGCCAACGTCGTTCGACCAGAAACCTGGTGCAGCACCGACCTCAGCGACTTCGACGCCGAGCCTCTACTAAGGAGCGGCGGAGAGAGAAAGGAGAGAGATAGCGCGGAGGAATCAGAATCTGGTTTGGAGTTTCCAAAGCTATCTGGCACGGAAGCTCGTCTCCGGCGCCACCAACAACGACGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

139

Amino Acids

15.4

Weight (kDa)

6.52

Isoelectric Point (pI)

77.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013765)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0072251 RchiOBHm_Chr7g0213171
rosa_laevigata	RLG00000001471 RLG00000002827 RLG00000021574 RLG00000033882
rosa_multiflora	Rmu_co8182758.1_g000001 Rmu_sc0028836.1_g000001 Rmu_sc0032877.1_g000003 Rmu_ssc0000084.1_g000011
rosa_roxburghii	Rroxscaffold_4G00300480 Rroxscaffold_5G00332980
rosa_rugosa	Rorug07G0139900
rosa_samantha	Rh7AG271600 Rh7BG267300 Rh7CG290900 Rh7DG279700
rosa_wichuraiana	Rw7G023570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	396
AccBSI	CCGCTC	1 cut(s)	306
AccII	CGCG	1 cut(s)	335
AciI	CCGC	4 cut(s)	13, 306, 309, 335
AcyI	GRCGYC	2 cut(s)	285, 397
AjnI	CCWGG	1 cut(s)	254
AluBI	AGCT	3 cut(s)	221, 370, 386
AluI	AGCT	3 cut(s)	221, 370, 386
Alw26I	GTCTC	1 cut(s)	395
AlwNI	CAGNNNCTG	1 cut(s)	350
AoxI	GGCC	1 cut(s)	183
ApaI	GGGCCC	1 cut(s)	187
ApeKI	GCWGC	1 cut(s)	261
AspLEI	GCGC	2 cut(s)	335, 399
AspS9I	GGNCC	3 cut(s)	34, 183, 184
AsuC2I	CCSGG	2 cut(s)	38, 192
AsuHPI	GGTGA	1 cut(s)	195
AvaII	GGWCC	1 cut(s)	34
BaeGI	GKGCMC	1 cut(s)	187
BanI	GGYRCC	1 cut(s)	396
BanII	GRGCYC	1 cut(s)	187
BbvCI	CCTCAGC	1 cut(s)	272
BbvI	GCAGC	1 cut(s)	273
BccI	CCATC	1 cut(s)	3
BceAI	ACGGC	1 cut(s)	73
BcgI	CGANNNNNNTGC	2 cut(s)	44, 78
BciT130I	CCWGG	1 cut(s)	256
BcnI	CCSGG	2 cut(s)	38, 192
BcoDI	GTCTC	1 cut(s)	395
BfaI	CTAG	1 cut(s)	415
BfoI	RGCGCY	1 cut(s)	400
BisI	GCNGC	3 cut(s)	14, 262, 307
BlsI	GCNGC	3 cut(s)	15, 263, 308
Bme1390I	CCNGG	3 cut(s)	38, 192, 256
Bme18I	GGWCC	1 cut(s)	34
BmgT120I	GGNCC	3 cut(s)	34, 183, 184
BmiI	GGNNCC	2 cut(s)	185, 398
BmrFI	CCNGG	3 cut(s)	38, 192, 256
BmsI	GCATC	1 cut(s)	70
Bpu10I	CCTNAGC	1 cut(s)	272
BpuMI	CCSGG	2 cut(s)	38, 192
BsaHI	GRCGYC	2 cut(s)	285, 397
BsaJI	CCNNGG	1 cut(s)	108
Bse1I	ACTGG	1 cut(s)	126
BseBI	CCWGG	1 cut(s)	256
BseDI	CCNNGG	1 cut(s)	108
BseGI	GGATG	2 cut(s)	14, 46
BseMII	CTCAG	1 cut(s)	286
BseNI	ACTGG	1 cut(s)	126
BseSI	GKGCMC	1 cut(s)	187
BseXI	GCAGC	1 cut(s)	273
BsgI	GTGCAG	1 cut(s)	280
Bsh1236I	CGCG	1 cut(s)	335
BshFI	GGCC	1 cut(s)	185
BshNI	GGYRCC	1 cut(s)	396
BsiSI	CCGG	3 cut(s)	37, 192, 394
BsmAI	GTCTC	1 cut(s)	395
BsmBI	CGTCTC	1 cut(s)	395
BsnI	GGCC	1 cut(s)	185
Bsp120I	GGGCCC	1 cut(s)	183
Bsp1286I	GDGCHC	1 cut(s)	187
Bsp143I	GATC	1 cut(s)	212
BspACI	CCGC	4 cut(s)	13, 306, 309, 335
BspANI	GGCC	1 cut(s)	185
BspCNI	CTCAG	1 cut(s)	285
BspFNI	CGCG	1 cut(s)	335
BspLI	GGNNCC	2 cut(s)	185, 398
BspT107I	GGYRCC	1 cut(s)	396
BsrBI	CCGCTC	1 cut(s)	306
BsrI	ACTGG	1 cut(s)	126
BssECI	CCNNGG	1 cut(s)	108
BssMI	GATC	1 cut(s)	212
BssNI	GRCGYC	2 cut(s)	285, 397
Bst2UI	CCWGG	1 cut(s)	256
BstACI	GRCGYC	2 cut(s)	285, 397
BstC8I	GCNNGC	1 cut(s)	231
BstDEI	CTNAG	2 cut(s)	272, 299
BstF5I	GGATG	2 cut(s)	14, 46
BstFNI	CGCG	1 cut(s)	335
BstH2I	RGCGCY	1 cut(s)	400
BstHHI	GCGC	2 cut(s)	335, 399
BstKTI	GATC	1 cut(s)	215
BstMAI	GTCTC	1 cut(s)	395
BstMBI	GATC	1 cut(s)	212
BstMWI	GCNNNNNNNGC	1 cut(s)	10
BstNI	CCWGG	1 cut(s)	256
BstNSI	RCATGY	1 cut(s)	233
BstSCI	CCNGG	3 cut(s)	36, 190, 254
BstSLI	GKGCMC	1 cut(s)	187
BstUI	CGCG	1 cut(s)	335
BstV1I	GCAGC	1 cut(s)	273
BstXI	CCANNNNNNTGG	1 cut(s)	255
BsuRI	GGCC	1 cut(s)	185
BtsCI	GGATG	2 cut(s)	14, 46
BtsIMutI	CAGTG	1 cut(s)	133
Cac8I	GCNNGC	1 cut(s)	231
CaiI	CAGNNNCTG	1 cut(s)	350
CfoI	GCGC	2 cut(s)	335, 399
Cfr13I	GGNCC	3 cut(s)	34, 183, 184
CseI	GACGC	1 cut(s)	293
CsiI	ACCWGGT	1 cut(s)	254
CviAII	CATG	2 cut(s)	5, 230
CviJI	RGCY	9 cut(s)	60, 88, 114, 122, 185, 221, 292, 370, 386
CviKI_1	RGCY	9 cut(s)	60, 88, 114, 122, 185, 221, 292, 370, 386
DdeI	CTNAG	2 cut(s)	272, 299
DinI	GGCGCC	1 cut(s)	398
DpnI	GATC	1 cut(s)	214
DpnII	GATC	1 cut(s)	212
EciI	GGCGGA	1 cut(s)	324
Eco24I	GRGCYC	1 cut(s)	187
Eco47I	GGWCC	1 cut(s)	34
EcoO109I	RGGNCCY	1 cut(s)	183
EcoRII	CCWGG	1 cut(s)	254
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	187
EgeI	GGCGCC	1 cut(s)	398
EheI	GGCGCC	1 cut(s)	398
Esp3I	CGTCTC	1 cut(s)	395
FaeI	CATG	2 cut(s)	8, 233
FaiI	YATR	2 cut(s)	6, 231
FatI	CATG	2 cut(s)	4, 229
Fnu4HI	GCNGC	3 cut(s)	14, 262, 307
FokI	GGATG	2 cut(s)	21, 53
FriOI	GRGCYC	1 cut(s)	187
Fsp4HI	GCNGC	3 cut(s)	14, 262, 307
FspBI	CTAG	1 cut(s)	415
GlaI	GCGC	2 cut(s)	334, 398
GluI	GCNGC	3 cut(s)	14, 262, 307
HaeII	RGCGCY	1 cut(s)	400
HaeIII	GGCC	1 cut(s)	185
HapII	CCGG	3 cut(s)	37, 192, 394
HgaI	GACGC	1 cut(s)	293
HhaI	GCGC	2 cut(s)	335, 399
Hin1I	GRCGYC	2 cut(s)	285, 397
Hin1II	CATG	2 cut(s)	8, 233
Hin6I	GCGC	2 cut(s)	333, 397
HinP1I	GCGC	2 cut(s)	333, 397
HinfI	GANTC	4 cut(s)	95, 177, 341, 347
HpaII	CCGG	3 cut(s)	37, 192, 394
HphI	GGTGA	1 cut(s)	195
Hpy166II	GTNNAC	1 cut(s)	203
Hpy188I	TCNGA	3 cut(s)	66, 109, 346
Hpy8I	GTNNAC	1 cut(s)	203
Hpy99I	CGWCG	4 cut(s)	213, 242, 287, 414
HpyCH4IV	ACGT	1 cut(s)	237
HpyCH4V	TGCA	6 cut(s)	4, 28, 55, 83, 229, 261
HpyF10VI	GCNNNNNNNGC	1 cut(s)	10
HpyF3I	CTNAG	2 cut(s)	272, 299
HpySE526I	ACGT	1 cut(s)	237
Hsp92I	GRCGYC	2 cut(s)	285, 397
Hsp92II	CATG	2 cut(s)	8, 233
HspAI	GCGC	2 cut(s)	333, 397
KasI	GGCGCC	1 cut(s)	396
Kzo9I	GATC	1 cut(s)	212
LmnI	GCTCC	1 cut(s)	303
Lsp1109I	GCAGC	1 cut(s)	273
LweI	GCATC	1 cut(s)	70
MabI	ACCWGGT	1 cut(s)	254
MaeI	CTAG	1 cut(s)	415
MaeII	ACGT	1 cut(s)	237
MalI	GATC	1 cut(s)	214
MbiI	CCGCTC	1 cut(s)	306
MboI	GATC	1 cut(s)	212
MboII	GAAGA	1 cut(s)	89
MhlI	GDGCHC	1 cut(s)	187
Mly113I	GGCGCC	1 cut(s)	397
MlyI	GAGTC	1 cut(s)	104
MmeI	TCCRAC	2 cut(s)	44, 72
MnlI	CCTC	6 cut(s)	11, 103, 216, 281, 303, 331
Mph1103I	ATGCAT	1 cut(s)	6
MslI	CAYNNNNRTG	1 cut(s)	228
MspI	CCGG	3 cut(s)	37, 192, 394
MspR9I	CCNGG	3 cut(s)	38, 192, 256
MvaI	CCWGG	1 cut(s)	256
MvnI	CGCG	1 cut(s)	335
MwoI	GCNNNNNNNGC	1 cut(s)	10
NarI	GGCGCC	1 cut(s)	397
NciI	CCSGG	2 cut(s)	38, 192
NdeII	GATC	1 cut(s)	212
NlaIII	CATG	2 cut(s)	8, 233
NlaIV	GGNNCC	2 cut(s)	185, 398
NmeAIII	GCCGAG	1 cut(s)	313
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	233
PaeI	GCATGC	1 cut(s)	233
PfeI	GAWTC	3 cut(s)	177, 341, 347
PkrI	GCNGC	3 cut(s)	15, 263, 308
PleI	GAGTC	1 cut(s)	103
PluTI	GGCGCC	1 cut(s)	400
PpsI	GAGTC	1 cut(s)	103
Psp6I	CCWGG	1 cut(s)	254
PspGI	CCWGG	1 cut(s)	254
PspN4I	GGNNCC	2 cut(s)	185, 398
PspOMI	GGGCCC	1 cut(s)	183
PspPI	GGNCC	3 cut(s)	34, 183, 184
PstNI	CAGNNNCTG	1 cut(s)	350
RseI	CAYNNNNRTG	1 cut(s)	228
SatI	GCNGC	3 cut(s)	14, 262, 307
Sau3AI	GATC	1 cut(s)	212
Sau96I	GGNCC	3 cut(s)	34, 183, 184
SchI	GAGTC	1 cut(s)	104
ScrFI	CCNGG	3 cut(s)	38, 192, 256
SduI	GDGCHC	1 cut(s)	187
SetI	ASST	7 cut(s)	208, 223, 240, 257, 273, 372, 388
SexAI	ACCWGGT	1 cut(s)	254
SfaNI	GCATC	1 cut(s)	70
SfoI	GGCGCC	1 cut(s)	398
SinI	GGWCC	1 cut(s)	34
SmiMI	CAYNNNNRTG	1 cut(s)	228
SphI	GCATGC	1 cut(s)	233
SsiI	CCGC	4 cut(s)	13, 306, 309, 335
SspDI	GGCGCC	1 cut(s)	396
SspMI	CTAG	1 cut(s)	415
StyD4I	CCNGG	3 cut(s)	36, 190, 254
TaiI	ACGT	1 cut(s)	240
TaqI	TCGA	4 cut(s)	141, 208, 244, 282
TauI	GCSGC	2 cut(s)	16, 309
TfiI	GAWTC	3 cut(s)	177, 341, 347
TscAI	CASTG	1 cut(s)	133
TseI	GCWGC	1 cut(s)	261
TspGWI	ACGGA	1 cut(s)	395
TspRI	CASTG	1 cut(s)	133
VpaK11BI	GGWCC	1 cut(s)	34
XceI	RCATGY	1 cut(s)	233
XspI	CTAG	1 cut(s)	415
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.