Rorug07G0139900

21 kDa protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0013765
Physical Location & Seq
Reverse (-)
11030615 .. 11032025
1411 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0139900.1

Sequence Viewer

Length: 435 bp
ATGGAAAAAGACTTGATCATGGTTGGTGCTACAGCTGTGGAGGACAAATTGCAAAAAAGGGCTGTGATGGCCAGTGACTTTGCTATTGCCCAGTTTCAGTTTTTGGAGAGACTTTTGGTTGTCCATGGACATTGGTGCTATAAAAGGATTGCTCAGATGATTTGCTACTTCTACAAAAATATAGCATTTGGTCTGGTTGATGCTGCTGCTTCCAAGAATACTTCAACCATGACAAAGTCCTCTTCATCATCTCAACCCAATAATGGATCACAGATCTCTAAAGAGCTGGTCAAGGCACATCAATACCGAGCTATTTATTTGACTTTTCACTTCATTCATTTGCTTGTGTTTAGGGCATGCACTAGAATGCTTTTCTTGTGTAAAATGTTGGTTTCAATGATTGGGAAATGCACCCCTTTTGCTTTTGAAGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMEI

Protein Analysis

144

Amino Acids

16.39

Weight (kDa)

9.42

Isoelectric Point (pI)

34.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PhoLip_ATPase_C PF16212 22 - 68 7.3e-21 Phospholipid-translocating P-type ATPase C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 274
AcoI YGGCCR 1 cut(s) 69
AfiI CCNNNNNNNGG 1 cut(s) 263
AgsI TTSAA 3 cut(s) 225, 396, 428
AluBI AGCT 3 cut(s) 35, 286, 311
AluI AGCT 3 cut(s) 35, 286, 311
Alw26I GTCTC 1 cut(s) 103
AlwI GGATC 1 cut(s) 274
AoxI GGCC 1 cut(s) 69
ApeKI GCWGC 2 cut(s) 203, 206
BalI TGGCCA 1 cut(s) 71
BbvI GCAGC 2 cut(s) 190, 193
BccI CCATC 1 cut(s) 61
BclI TGATCA 1 cut(s) 15
BcoDI GTCTC 1 cut(s) 103
BfaI CTAG 1 cut(s) 363
BfmI CTRYAG 1 cut(s) 30
BglII AGATCT 1 cut(s) 273
BisI GCNGC 2 cut(s) 204, 207
BlsI GCNGC 2 cut(s) 205, 208
BmrI ACTGGG 1 cut(s) 85
BmsI GCATC 1 cut(s) 190
BmuI ACTGGG 1 cut(s) 85
BsaJI CCNNGG 1 cut(s) 124
Bsc4I CCNNNNNNNGG 1 cut(s) 263
Bse1I ACTGG 2 cut(s) 72, 91
BseDI CCNNGG 1 cut(s) 124
BseLI CCNNNNNNNGG 1 cut(s) 263
BseMII CTCAG 1 cut(s) 167
BseNI ACTGG 2 cut(s) 72, 91
BseXI GCAGC 2 cut(s) 190, 193
BshFI GGCC 1 cut(s) 71
BslI CCNNNNNNNGG 1 cut(s) 263
BsmAI GTCTC 1 cut(s) 103
BsmI GAATGC 1 cut(s) 372
BsnI GGCC 1 cut(s) 71
Bsp143I GATC 3 cut(s) 15, 266, 273
Bsp19I CCATGG 1 cut(s) 124
BspANI GGCC 1 cut(s) 71
BspCNI CTCAG 1 cut(s) 166
BspPI GGATC 1 cut(s) 274
BsrI ACTGG 2 cut(s) 72, 91
BssECI CCNNGG 1 cut(s) 124
BssMI GATC 3 cut(s) 15, 266, 273
BssT1I CCWWGG 1 cut(s) 124
Bst6I CTCTTC 1 cut(s) 247
BstC8I GCNNGC 1 cut(s) 358
BstDEI CTNAG 1 cut(s) 153
BstDSI CCRYGG 1 cut(s) 124
BstKTI GATC 3 cut(s) 18, 269, 276
BstMAI GTCTC 1 cut(s) 103
BstMBI GATC 3 cut(s) 15, 266, 273
BstMWI GCNNNNNNNGC 1 cut(s) 68
BstNSI RCATGY 1 cut(s) 360
BstSFI CTRYAG 1 cut(s) 30
BstV1I GCAGC 2 cut(s) 190, 193
BstX2I RGATCY 1 cut(s) 273
BstYI RGATCY 1 cut(s) 273
BsuRI GGCC 1 cut(s) 71
BtgI CCRYGG 1 cut(s) 124
BtsIMutI CAGTG 1 cut(s) 79
Cac8I GCNNGC 1 cut(s) 358
CviAII CATG 4 cut(s) 19, 125, 229, 357
CviJI RGCY 5 cut(s) 35, 62, 71, 286, 311
CviKI_1 RGCY 5 cut(s) 35, 62, 71, 286, 311
DdeI CTNAG 1 cut(s) 153
DpnI GATC 3 cut(s) 17, 268, 275
DpnII GATC 3 cut(s) 15, 266, 273
EaeI YGGCCR 1 cut(s) 69
Eam1104I CTCTTC 1 cut(s) 247
EarI CTCTTC 1 cut(s) 247
Eco130I CCWWGG 1 cut(s) 124
EcoT14I CCWWGG 1 cut(s) 124
ErhI CCWWGG 1 cut(s) 124
FaeI CATG 4 cut(s) 22, 128, 232, 360
FaiI YATR 6 cut(s) 20, 126, 141, 182, 230, 358
FatI CATG 4 cut(s) 18, 124, 228, 356
FbaI TGATCA 1 cut(s) 15
Fnu4HI GCNGC 2 cut(s) 204, 207
Fsp4HI GCNGC 2 cut(s) 204, 207
FspBI CTAG 1 cut(s) 363
GluI GCNGC 2 cut(s) 204, 207
HaeIII GGCC 1 cut(s) 71
Hin1II CATG 4 cut(s) 22, 128, 232, 360
Hpy188I TCNGA 1 cut(s) 156
HpyCH4V TGCA 3 cut(s) 52, 360, 411
HpyF10VI GCNNNNNNNGC 1 cut(s) 68
HpyF3I CTNAG 1 cut(s) 153
Hsp92II CATG 4 cut(s) 22, 128, 232, 360
Ksp22I TGATCA 1 cut(s) 15
Kzo9I GATC 3 cut(s) 15, 266, 273
LpnPI CCDG 4 cut(s) 85, 104, 179, 272
Lsp1109I GCAGC 2 cut(s) 190, 193
LweI GCATC 1 cut(s) 190
MaeI CTAG 1 cut(s) 363
MaeIII GTNAC 1 cut(s) 74
MalI GATC 3 cut(s) 17, 268, 275
MboI GATC 3 cut(s) 15, 266, 273
MboII GAAGA 1 cut(s) 234
MflI RGATCY 1 cut(s) 273
MlsI TGGCCA 1 cut(s) 71
MluCI AATT 1 cut(s) 47
MluNI TGGCCA 1 cut(s) 71
MnlI CCTC 2 cut(s) 34, 250
Mox20I TGGCCA 1 cut(s) 71
MscI TGGCCA 1 cut(s) 71
MseI TTAA 1 cut(s) 433
MslI CAYNNNNRTG 1 cut(s) 365
Msp20I TGGCCA 1 cut(s) 71
MspA1I CMGCKG 1 cut(s) 35
Mva1269I GAATGC 1 cut(s) 372
MwoI GCNNNNNNNGC 1 cut(s) 68
NcoI CCATGG 1 cut(s) 124
NdeII GATC 3 cut(s) 15, 266, 273
NlaIII CATG 4 cut(s) 22, 128, 232, 360
NmuCI GTSAC 1 cut(s) 74
NspI RCATGY 1 cut(s) 360
PaeI GCATGC 1 cut(s) 360
PctI GAATGC 1 cut(s) 372
PflFI GACNNNGTC 1 cut(s) 235
PkrI GCNGC 2 cut(s) 205, 208
PsuI RGATCY 1 cut(s) 273
PsyI GACNNNGTC 1 cut(s) 235
PvuII CAGCTG 1 cut(s) 35
RseI CAYNNNNRTG 1 cut(s) 365
SaqAI TTAA 1 cut(s) 433
SatI GCNGC 2 cut(s) 204, 207
Sau3AI GATC 3 cut(s) 15, 266, 273
SetI ASST 3 cut(s) 37, 288, 313
SfaNI GCATC 1 cut(s) 190
SfcI CTRYAG 1 cut(s) 30
SmiMI CAYNNNNRTG 1 cut(s) 365
SphI GCATGC 1 cut(s) 360
Sse9I AATT 1 cut(s) 47
SspMI CTAG 1 cut(s) 363
StyI CCWWGG 1 cut(s) 124
TasI AATT 1 cut(s) 47
Tru1I TTAA 1 cut(s) 433
Tru9I TTAA 1 cut(s) 433
TscAI CASTG 1 cut(s) 79
TseFI GTSAC 1 cut(s) 74
TseI GCWGC 2 cut(s) 203, 206
Tsp45I GTSAC 1 cut(s) 74
TspDTI ATGAA 3 cut(s) 234, 322, 326
TspRI CASTG 1 cut(s) 79
Tth111I GACNNNGTC 1 cut(s) 235
XceI RCATGY 1 cut(s) 360
XspI CTAG 1 cut(s) 363
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.