Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0010551

Physical Location & Seq

Genomic Coordinates Reverse (-)

81859637 .. 81862305

Gene Structure 2669 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ35086

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGAAACTGCTAAAGAGCCTTCTCCTAGGTTGCAATAACAGTGTAGCCTCATCTGTTCAAGGAGATTTTTCAGAGAATCCACTGCCTTCACCAGATGTTCTTGAAAAGTTACAAACACCTGAGGGTAATGTCTCTTCAGAGAGTAATGTCCCTTCAGCCCCAGACTCAGACTCCAAACGTGAACTGTTGAAGCAGGATTTGCAGTTGCCTCCTGAAGTTCCACATAACCTCGCTGCTCTAAATGGCCCCAGCTATAGTCTTGGTTTTTTGCCACCGATGCTAGGAGGCCAGGTTTTACAAGTGGAAGGACATGATAATCAGGCACCTGAAGCACCTCGGGTTTCGAACTTTGGTGGAAATTCTGTTGGTGTTCCCAGCCCAAATACAACCCCACCCCTGCCAAGCTCCATAGCTGCTTCTCCACAGATTCCTGTTTTCAGGCATGCATATCCCGCTAATTATTTCCCATATGGCTATCTCCCGCCGTATTATCTGCCACCAATGCACCAGTTTTTAAGCCCCAATGGCTTTCCTCCACAGCCTTCAGCATATCTACCACCAACAGCACCAGCTGCTGCTGGGATTAAATATCCTCCTCCGCAGTTCAAGGCAGGGAGCAATGCTGGAAATCCACCCCAGTATAACATTCAATCCGGTGGTTCATTCATAACCACCCCTGCTGGTTATGCTCCTGGTTCAGCAGTTACATCTGGAAGCTCAGTTGGTAACACTGAAGATCTTGGAGCATCTCAATCGAAAGAAAGTCATATCTACACTACAGGACAGCTGACTGAGGGTTCAACTGTTTGGATTCATACTCCTGGACAAGATATCAGTTCTCTGTACAACCTTCCTCAGGGGCAACGCTTCGCGTTCTCGCCTGTCCATGCTGGTCATGGTGCCATGACTGGACTTTATCCACCAGGGCAAACGATGGCTTCTCCAACATATCTGCAACAGTCCCAGGCTGCGGCTGGAGCTGCTGAGACCATAGGACCCCCACCTGCTGCTTATCAGCAGCCTCAACATGCACAGATGAATTGGAACAGTAGTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0008150 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043388 GO:0044093 GO:0044424 GO:0044464 GO:0051082 GO:0051098 GO:0051099 GO:0051101 GO:0065007 GO:0065009

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1296

Protein Analysis

352

Amino Acids

36.89

Weight (kDa)

5.5

Isoelectric Point (pI)

65.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010551)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g42501
malus_domestica	MD03G1031400.v1.1 MD11G1035700.v1.1
prunus_persica	Prupe.6G026700_v2.0.a1 Prupe.6G026700_v2.0.a1
pyrus_communis	pycom03g02550 pycom11g02960
rosa_chinensis	RchiOBHm_Chr5g0076171 RchiOBHm_Chr5g0076181
rosa_laevigata	RLG00000036607
rosa_multiflora	Rmu_co8110220.1_g000001 Rmu_sc0003601.1_g000003 Rmu_sc0037654.1_g000001 Rmu_ssc0000123.1_g000003
rosa_roxburghii	Rroxscaffold_1G00005640
rosa_rugosa	Rorug05G0445300
rosa_samantha	Rh5AG501400 Rh5BG522900 Rh5CG546700 Rh5DG535300
rosa_wichuraiana	Rw5G046540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1012
Acc36I	ACCTGC	1 cut(s)	1012
AccB1I	GGYRCC	2 cut(s)	322, 899
AccII	CGCG	1 cut(s)	872
AciI	CCGC	4 cut(s)	453, 482, 599, 971
AcsI	RAATTY	1 cut(s)	358
AcuI	CTGAAG	6 cut(s)	120, 138, 234, 348, 528, 753
AfaI	GTAC	1 cut(s)	845
AfiI	CCNNNNNNNGG	3 cut(s)	281, 856, 970
AgsI	TTSAA	6 cut(s)	59, 104, 190, 607, 650, 801
AjnI	CCWGG	5 cut(s)	288, 691, 820, 922, 963
AluBI	AGCT	7 cut(s)	252, 405, 413, 572, 717, 787, 980
AluI	AGCT	7 cut(s)	252, 405, 413, 572, 717, 787, 980
Alw26I	GTCTC	2 cut(s)	136, 980
AlwNI	CAGNNNCTG	1 cut(s)	575
Ama87I	CYCGRG	1 cut(s)	336
AoxI	GGCC	2 cut(s)	244, 286
ApeKI	GCWGC	8 cut(s)	233, 413, 572, 575, 968, 980, 1007, 1018
ApoI	RAATTY	1 cut(s)	358
AspA2I	CCTAGG	1 cut(s)	25
AspS9I	GGNCC	2 cut(s)	245, 995
AsuHPI	GGTGA	1 cut(s)	81
AsuII	TTCGAA	1 cut(s)	344
AvaI	CYCGRG	1 cut(s)	336
AvaII	GGWCC	1 cut(s)	995
AvrII	CCTAGG	1 cut(s)	25
AxyI	CCTNAGG	2 cut(s)	120, 855
BanI	GGYRCC	2 cut(s)	322, 899
BarI	GAAGNNNNNNTAC	4 cut(s)	118, 136, 150, 168
BbvI	GCAGC	8 cut(s)	220, 400, 559, 562, 955, 967, 994, 1030
BccI	CCATC	1 cut(s)	928
BceAI	ACGGC	1 cut(s)	469
BcgI	CGANNNNNNTGC	2 cut(s)	735, 769
BciT130I	CCWGG	5 cut(s)	290, 693, 822, 924, 965
BcoDI	GTCTC	2 cut(s)	136, 980
BfaI	CTAG	2 cut(s)	26, 281
BfmI	CTRYAG	2 cut(s)	253, 777
BfuAI	ACCTGC	1 cut(s)	1012
BglI	GCCNNNNNGGC	1 cut(s)	525
BglII	AGATCT	1 cut(s)	736
BisI	GCNGC	9 cut(s)	234, 414, 573, 576, 969, 972, 981, 1008, 1019
BlnI	CCTAGG	1 cut(s)	25
BlsI	GCNGC	9 cut(s)	235, 415, 574, 577, 970, 973, 982, 1009, 1020
Bme1390I	CCNGG	5 cut(s)	290, 693, 822, 924, 965
Bme18I	GGWCC	1 cut(s)	995
BmeT110I	CYCGRG	1 cut(s)	336
BmgT120I	GGNCC	2 cut(s)	245, 995
BmiI	GGNNCC	4 cut(s)	247, 324, 901, 997
BmrFI	CCNGG	5 cut(s)	290, 693, 822, 924, 965
BmrI	ACTGGG	1 cut(s)	631
BmsI	GCATC	2 cut(s)	267, 755
BmuI	ACTGGG	1 cut(s)	631
BpmI	CTGGAG	1 cut(s)	996
Bpu14I	TTCGAA	1 cut(s)	344
BsaI	GGTCTC	1 cut(s)	980
BsaJI	CCNNGG	4 cut(s)	25, 335, 923, 963
BsaWI	WCCGGW	1 cut(s)	653
BsaXI	ACNNNNNCTCC	4 cut(s)	155, 185, 276, 306
Bsc4I	CCNNNNNNNGG	3 cut(s)	281, 856, 970
Bse1I	ACTGG	3 cut(s)	508, 637, 913
Bse21I	CCTNAGG	2 cut(s)	120, 855
Bse3DI	GCAATG	1 cut(s)	625
BseBI	CCWGG	5 cut(s)	290, 693, 822, 924, 965
BseDI	CCNNGG	4 cut(s)	25, 335, 923, 963
BseLI	CCNNNNNNNGG	3 cut(s)	281, 856, 970
BseMI	GCAATG	1 cut(s)	625
BseMII	CTCAG	6 cut(s)	111, 180, 732, 783, 869, 975
BseNI	ACTGG	3 cut(s)	508, 637, 913
BseRI	GAGGAG	1 cut(s)	585
BseXI	GCAGC	8 cut(s)	220, 400, 559, 562, 955, 967, 994, 1030
BseYI	CCCAGC	3 cut(s)	248, 374, 578
Bsh1236I	CGCG	1 cut(s)	872
BshFI	GGCC	2 cut(s)	246, 288
BshNI	GGYRCC	2 cut(s)	322, 899
BsiHKCI	CYCGRG	1 cut(s)	336
BsiSI	CCGG	1 cut(s)	654
BslFI	GGGAC	2 cut(s)	134, 946
BslI	CCNNNNNNNGG	3 cut(s)	281, 856, 970
BsmAI	GTCTC	2 cut(s)	136, 980
BsmFI	GGGAC	2 cut(s)	134, 946
BsnI	GGCC	2 cut(s)	246, 288
Bso31I	GGTCTC	1 cut(s)	980
BsoBI	CYCGRG	1 cut(s)	336
Bsp119I	TTCGAA	1 cut(s)	344
Bsp1407I	TGTACA	1 cut(s)	843
Bsp143I	GATC	1 cut(s)	736
BspACI	CCGC	4 cut(s)	453, 482, 599, 971
BspANI	GGCC	2 cut(s)	246, 288
BspCNI	CTCAG	6 cut(s)	112, 179, 731, 784, 868, 976
BspFNI	CGCG	1 cut(s)	872
BspLI	GGNNCC	4 cut(s)	247, 324, 901, 997
BspMI	ACCTGC	1 cut(s)	1012
BspT104I	TTCGAA	1 cut(s)	344
BspT107I	GGYRCC	2 cut(s)	322, 899
BspTNI	GGTCTC	1 cut(s)	980
BsrDI	GCAATG	1 cut(s)	625
BsrGI	TGTACA	1 cut(s)	843
BsrI	ACTGG	3 cut(s)	508, 637, 913
BssECI	CCNNGG	4 cut(s)	25, 335, 923, 963
BssMI	GATC	1 cut(s)	736
BssT1I	CCWWGG	1 cut(s)	25
Bst2UI	CCWGG	5 cut(s)	290, 693, 822, 924, 965
Bst4CI	ACNGT	5 cut(s)	41, 186, 805, 960, 1049
Bst6I	CTCTTC	1 cut(s)	139
BstAPI	GCANNNNNTGC	2 cut(s)	199, 572
BstAUI	TGTACA	1 cut(s)	843
BstBI	TTCGAA	1 cut(s)	344
BstC8I	GCNNGC	1 cut(s)	444
BstDEI	CTNAG	6 cut(s)	120, 166, 718, 792, 855, 984
BstENI	CCTNNNNNAGG	1 cut(s)	854
BstFNI	CGCG	1 cut(s)	872
BstKTI	GATC	1 cut(s)	739
BstMAI	GTCTC	2 cut(s)	136, 980
BstMBI	GATC	1 cut(s)	736
BstNI	CCWGG	5 cut(s)	290, 693, 822, 924, 965
BstNSI	RCATGY	2 cut(s)	446, 1031
BstSCI	CCNGG	5 cut(s)	288, 691, 820, 922, 963
BstSFI	CTRYAG	2 cut(s)	253, 777
BstUI	CGCG	1 cut(s)	872
BstV1I	GCAGC	8 cut(s)	220, 400, 559, 562, 955, 967, 994, 1030
BstX2I	RGATCY	1 cut(s)	736
BstYI	RGATCY	1 cut(s)	736
Bsu36I	CCTNAGG	2 cut(s)	120, 855
BsuRI	GGCC	2 cut(s)	246, 288
BtsI	GCAGTG	1 cut(s)	80
BtsIMutI	CAGTG	3 cut(s)	46, 80, 729
BveI	ACCTGC	1 cut(s)	1012
Cac8I	GCNNGC	1 cut(s)	444
CaiI	CAGNNNCTG	1 cut(s)	575
Cfr13I	GGNCC	2 cut(s)	245, 995
Csp6I	GTAC	1 cut(s)	844
CviAII	CATG	6 cut(s)	311, 443, 887, 896, 904, 1028
CviQI	GTAC	1 cut(s)	844
DdeI	CTNAG	6 cut(s)	120, 166, 718, 792, 855, 984
DpnI	GATC	1 cut(s)	738
DpnII	GATC	1 cut(s)	736
Eam1104I	CTCTTC	1 cut(s)	139
EarI	CTCTTC	1 cut(s)	139
Eco130I	CCWWGG	1 cut(s)	25
Eco31I	GGTCTC	1 cut(s)	980
Eco32I	GATATC	1 cut(s)	832
Eco47I	GGWCC	1 cut(s)	995
Eco57I	CTGAAG	6 cut(s)	120, 138, 234, 348, 528, 753
Eco81I	CCTNAGG	2 cut(s)	120, 855
Eco88I	CYCGRG	1 cut(s)	336
EcoNI	CCTNNNNNAGG	1 cut(s)	854
EcoO109I	RGGNCCY	1 cut(s)	995
EcoRII	CCWGG	5 cut(s)	288, 691, 820, 922, 963
EcoRV	GATATC	1 cut(s)	832
EcoT14I	CCWWGG	1 cut(s)	25
EcoT22I	ATGCAT	1 cut(s)	448
ErhI	CCWWGG	1 cut(s)	25
FaeI	CATG	6 cut(s)	314, 446, 890, 899, 907, 1031
FaqI	GGGAC	2 cut(s)	134, 946
FatI	CATG	6 cut(s)	310, 442, 886, 895, 903, 1027
FauI	CCCGC	2 cut(s)	460, 489
FauNDI	CATATG	1 cut(s)	469
Fnu4HI	GCNGC	9 cut(s)	234, 414, 573, 576, 969, 972, 981, 1008, 1019
Fsp4HI	GCNGC	9 cut(s)	234, 414, 573, 576, 969, 972, 981, 1008, 1019
FspBI	CTAG	2 cut(s)	26, 281
GluI	GCNGC	9 cut(s)	234, 414, 573, 576, 969, 972, 981, 1008, 1019
GsaI	CCCAGC	3 cut(s)	252, 378, 582
GsuI	CTGGAG	1 cut(s)	996
HaeIII	GGCC	2 cut(s)	246, 288
HapII	CCGG	1 cut(s)	654
Hin1II	CATG	6 cut(s)	314, 446, 890, 899, 907, 1031
HinfI	GANTC	5 cut(s)	76, 164, 170, 427, 811
HpaII	CCGG	1 cut(s)	654
HphI	GGTGA	1 cut(s)	81
Hpy166II	GTNNAC	1 cut(s)	182
Hpy188I	TCNGA	3 cut(s)	73, 139, 169
Hpy188III	TCNNGA	3 cut(s)	101, 212, 711
Hpy8I	GTNNAC	1 cut(s)	182
HpyAV	CCTTC	6 cut(s)	29, 96, 162, 299, 552, 860
HpyCH4III	ACNGT	5 cut(s)	41, 186, 805, 960, 1049
HpyCH4IV	ACGT	1 cut(s)	178
HpyCH4V	TGCA	6 cut(s)	33, 202, 446, 505, 955, 1031
HpyF3I	CTNAG	6 cut(s)	120, 166, 718, 792, 855, 984
HpySE526I	ACGT	1 cut(s)	178
Hsp92II	CATG	6 cut(s)	314, 446, 890, 899, 907, 1031
Kzo9I	GATC	1 cut(s)	736
LmnI	GCTCC	5 cut(s)	410, 615, 694, 743, 977
Lsp1109I	GCAGC	8 cut(s)	220, 400, 559, 562, 955, 967, 994, 1030
LweI	GCATC	2 cut(s)	267, 755
MaeI	CTAG	2 cut(s)	26, 281
MaeII	ACGT	1 cut(s)	178
MaeIII	GTNAC	3 cut(s)	108, 703, 725
MalI	GATC	1 cut(s)	738
MboI	GATC	1 cut(s)	736
MboII	GAAGA	2 cut(s)	126, 746
MflI	RGATCY	1 cut(s)	736
MluCI	AATT	3 cut(s)	358, 457, 1039
MlyI	GAGTC	2 cut(s)	158, 164
MmeI	TCCRAC	1 cut(s)	968
Mph1103I	ATGCAT	1 cut(s)	448
MseI	TTAA	2 cut(s)	515, 585
MspA1I	CMGCKG	2 cut(s)	572, 787
MspI	CCGG	1 cut(s)	654
MspR9I	CCNGG	5 cut(s)	290, 693, 822, 924, 965
MvaI	CCWGG	5 cut(s)	290, 693, 822, 924, 965
MvnI	CGCG	1 cut(s)	872
NdeI	CATATG	1 cut(s)	469
NdeII	GATC	1 cut(s)	736
NlaIII	CATG	6 cut(s)	314, 446, 890, 899, 907, 1031
NlaIV	GGNNCC	4 cut(s)	247, 324, 901, 997
NsiI	ATGCAT	1 cut(s)	448
NspI	RCATGY	2 cut(s)	446, 1031
NspV	TTCGAA	1 cut(s)	344
PaeI	GCATGC	1 cut(s)	446
PaqCI	CACCTGC	1 cut(s)	1012
PfeI	GAWTC	3 cut(s)	76, 427, 811
PfoI	TCCNGGA	1 cut(s)	820
PkrI	GCNGC	9 cut(s)	235, 415, 574, 577, 970, 973, 982, 1009, 1020
PleI	GAGTC	2 cut(s)	158, 164
PpsI	GAGTC	2 cut(s)	158, 164
PpuMI	RGGWCCY	1 cut(s)	995
Psp5II	RGGWCCY	1 cut(s)	995
Psp6I	CCWGG	5 cut(s)	288, 691, 820, 922, 963
PspFI	CCCAGC	3 cut(s)	248, 374, 578
PspGI	CCWGG	5 cut(s)	288, 691, 820, 922, 963
PspN4I	GGNNCC	4 cut(s)	247, 324, 901, 997
PspPI	GGNCC	2 cut(s)	245, 995
PspPPI	RGGWCCY	1 cut(s)	995
PstNI	CAGNNNCTG	1 cut(s)	575
PsuI	RGATCY	1 cut(s)	736
PvuII	CAGCTG	2 cut(s)	572, 787
RsaI	GTAC	1 cut(s)	845
RsaNI	GTAC	1 cut(s)	844
SaqAI	TTAA	2 cut(s)	515, 585
SatI	GCNGC	9 cut(s)	234, 414, 573, 576, 969, 972, 981, 1008, 1019
Sau3AI	GATC	1 cut(s)	736
Sau96I	GGNCC	2 cut(s)	245, 995
SchI	GAGTC	2 cut(s)	158, 164
ScrFI	CCNGG	5 cut(s)	290, 693, 822, 924, 965
SfaNI	GCATC	2 cut(s)	267, 755
SfcI	CTRYAG	2 cut(s)	253, 777
SfuI	TTCGAA	1 cut(s)	344
SinI	GGWCC	1 cut(s)	995
SphI	GCATGC	1 cut(s)	446
Sse9I	AATT	3 cut(s)	358, 457, 1039
SsiI	CCGC	4 cut(s)	453, 482, 599, 971
SspMI	CTAG	2 cut(s)	26, 281
StyD4I	CCNGG	5 cut(s)	288, 691, 820, 922, 963
StyI	CCWWGG	1 cut(s)	25
TaaI	ACNGT	5 cut(s)	41, 186, 805, 960, 1049
TaiI	ACGT	1 cut(s)	181
TaqI	TCGA	2 cut(s)	344, 755
TasI	AATT	3 cut(s)	358, 457, 1039
TatI	WGTACW	1 cut(s)	843
TauI	GCSGC	1 cut(s)	974
TfiI	GAWTC	3 cut(s)	76, 427, 811
Tru1I	TTAA	2 cut(s)	515, 585
Tru9I	TTAA	2 cut(s)	515, 585
TscAI	CASTG	3 cut(s)	46, 87, 736
TseI	GCWGC	8 cut(s)	233, 413, 572, 575, 968, 980, 1007, 1018
TspDTI	ATGAA	5 cut(s)	17, 651, 655, 803, 1052
TspRI	CASTG	3 cut(s)	46, 87, 736
VpaK11BI	GGWCC	1 cut(s)	995
XagI	CCTNNNNNAGG	1 cut(s)	854
XapI	RAATTY	1 cut(s)	358
XceI	RCATGY	2 cut(s)	446, 1031
XcmI	CCANNNNNNNNNTGG	2 cut(s)	893, 971
XmaJI	CCTAGG	1 cut(s)	25
XspI	CTAG	2 cut(s)	26, 281
Zsp2I	ATGCAT	1 cut(s)	448

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.