Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0010551

Physical Location & Seq

Genomic Coordinates Reverse (-)

81862307 .. 81865783

Gene Structure 3477 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ35087

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGAGCGGCGGTGGGGAGACTAGGGTTTCAATCCCAGACAATGTACACAGCACGATCCAAAACATCAGAGAGATCACTAAGAAGCTTCACAGCGACGATGAAATCTATGCTGTGCTCAAGGAGTGCTCTATGGATCCCAACGAGACCGCCCAGAAGCTCTTGTATTTAGATACATTTCATGAGGTCAAAAAGAGACGTGATCGGAGAAAGGAGAACCTGAAAGGCAGGGCATCTGAAGATTTGAGGACAGCACCAGGTGCGCACAGGCGAATGGTCAGGGGTGGTGGCCAAGGGAATTATTCTTCTGATGCTGGTGGTGGGAGGAATTCTTCTGCTCGGAGGGAAAATGGAGCCAGTCATGTTGCAGATGGAGGTTCTCTGTCCACTTTTATGCCAGGTCAGCAGAAAACTAAGAACAATGCTGCGGCTCCAATCGCAAAAGCTTCAATTGGCATTCCAAATGGGATTAAAAACCTGTCAAATGGGACTTCTAGTCATGTTTCTGCTCCAAAATCCTCTGCCGGTGTAGATGCAAACAAGTTGGGAGCTACAGCACCTCGTTATGCTGTCGTTGTGGCATCTACACCTGTTGTTGGCTTAAAGGATCAACGCAAGGCCCCAACAACTACATCTGATCATCTTCCAAATTCTGCCACTTCTGCATCTGATTCTGGTGTTTACTCATCTGCTTCAGATCCTTCCTTATCAACTCATATACCAGAAAACAAAGATGTTTCTGGTGAATCTGTACTCATAGAGTTGTCAAAGAGTGAAAATGTTGCCTCCAAATCTGATAATCACGTGATCAAAGAAAAGACTCAAAGTGACAATGCTAAGGCAATTGGAAAGAATCGGCATACTAAGTTGTCAGAACCCCTTCCTCAACTCATGATGGTTCTCAGGCCATTCTGCCTTCTAATTCTGATGGAGAATCACAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0008150 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043388 GO:0044093 GO:0044424 GO:0044464 GO:0051082 GO:0051098 GO:0051099 GO:0051101 GO:0065007 GO:0065009

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1296

Protein Analysis

313

Amino Acids

33.43

Weight (kDa)

9.53

Isoelectric Point (pI)

44.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GIP1_N	PF06972	11 - 71	5.6e-31	GBF-interacting protein 1 N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010551)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g42501
malus_domestica	MD03G1031400.v1.1 MD11G1035700.v1.1
prunus_persica	Prupe.6G026700_v2.0.a1 Prupe.6G026700_v2.0.a1
pyrus_communis	pycom03g02550 pycom11g02960
rosa_chinensis	RchiOBHm_Chr5g0076171 RchiOBHm_Chr5g0076181
rosa_laevigata	RLG00000036607
rosa_multiflora	Rmu_co8110220.1_g000001 Rmu_sc0003601.1_g000003 Rmu_sc0037654.1_g000001 Rmu_ssc0000123.1_g000003
rosa_roxburghii	Rroxscaffold_1G00005640
rosa_rugosa	Rorug05G0445300
rosa_samantha	Rh5AG501400 Rh5BG522900 Rh5CG546700 Rh5DG535300
rosa_wichuraiana	Rw5G046540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	261
AccBSI	CCGCTC	1 cut(s)	6
AciI	CCGC	4 cut(s)	6, 9, 147, 425
AclWI	GGATC	5 cut(s)	49, 128, 141, 612, 689
AcoI	YGGCCR	1 cut(s)	286
AcsI	RAATTY	2 cut(s)	325, 646
AcuI	CTGAAG	2 cut(s)	255, 675
AcvI	CACGTG	1 cut(s)	802
AdeI	CACNNNGTG	1 cut(s)	257
AfaI	GTAC	2 cut(s)	45, 750
AfiI	CCNNNNNNNGG	1 cut(s)	593
AgsI	TTSAA	2 cut(s)	30, 447
AhdI	GACNNNNNGTC	1 cut(s)	492
AjiI	CACGTC	1 cut(s)	197
AjnI	CCWGG	2 cut(s)	253, 394
AluBI	AGCT	4 cut(s)	85, 157, 443, 548
AluI	AGCT	4 cut(s)	85, 157, 443, 548
Alw21I	GWGCWC	2 cut(s)	117, 128
Alw26I	GTCTC	3 cut(s)	11, 137, 187
AlwI	GGATC	5 cut(s)	49, 128, 141, 612, 689
AoxI	GGCC	3 cut(s)	286, 615, 902
ApeKI	GCWGC	1 cut(s)	422
ApoI	RAATTY	2 cut(s)	325, 646
Asp700I	GAANNNNTTC	1 cut(s)	876
AspLEI	GCGC	1 cut(s)	262
AspS9I	GGNCC	1 cut(s)	616
AsuHPI	GGTGA	1 cut(s)	752
BalI	TGGCCA	1 cut(s)	288
BamHI	GGATCC	1 cut(s)	133
BbrPI	CACGTG	1 cut(s)	802
Bbv12I	GWGCWC	2 cut(s)	117, 128
BbvI	GCAGC	1 cut(s)	409
BccI	CCATC	3 cut(s)	362, 886, 919
BciT130I	CCWGG	2 cut(s)	255, 396
BclI	TGATCA	2 cut(s)	634, 804
BcoDI	GTCTC	3 cut(s)	11, 137, 187
BfaI	CTAG	2 cut(s)	21, 492
BfmI	CTRYAG	1 cut(s)	549
BisI	GCNGC	3 cut(s)	7, 423, 426
BlsI	GCNGC	3 cut(s)	8, 424, 427
Bme1390I	CCNGG	2 cut(s)	255, 396
BmeRI	GACNNNNNGTC	1 cut(s)	492
BmgBI	CACGTC	1 cut(s)	197
BmgT120I	GGNCC	1 cut(s)	616
BmiI	GGNNCC	4 cut(s)	135, 352, 429, 618
BmrFI	CCNGG	2 cut(s)	255, 396
BmsI	GCATC	5 cut(s)	239, 298, 520, 587, 671
Bpu10I	CCTNAGC	1 cut(s)	834
BpuEI	CTTGAG	1 cut(s)	101
BsaAI	YACGTR	1 cut(s)	802
BsaI	GGTCTC	1 cut(s)	137
BsaJI	CCNNGG	1 cut(s)	289
Bsc4I	CCNNNNNNNGG	1 cut(s)	593
Bse118I	RCCGGY	1 cut(s)	521
Bse1I	ACTGG	1 cut(s)	354
BseBI	CCWGG	2 cut(s)	255, 396
BseDI	CCNNGG	1 cut(s)	289
BseLI	CCNNNNNNNGG	1 cut(s)	593
BseMII	CTCAG	1 cut(s)	913
BseNI	ACTGG	1 cut(s)	354
BseXI	GCAGC	1 cut(s)	409
BshFI	GGCC	3 cut(s)	288, 617, 904
BsiHKAI	GWGCWC	2 cut(s)	117, 128
BsiSI	CCGG	1 cut(s)	522
BslFI	GGGAC	1 cut(s)	499
BslI	CCNNNNNNNGG	1 cut(s)	593
BsmAI	GTCTC	3 cut(s)	11, 137, 187
BsmBI	CGTCTC	1 cut(s)	187
BsmFI	GGGAC	1 cut(s)	499
BsmI	GAATGC	1 cut(s)	453
BsnI	GGCC	3 cut(s)	288, 617, 904
Bso31I	GGTCTC	1 cut(s)	137
Bsp1286I	GDGCHC	2 cut(s)	117, 128
Bsp1407I	TGTACA	1 cut(s)	43
Bsp143I	GATC	8 cut(s)	54, 72, 133, 199, 604, 634, 694, 804
BspACI	CCGC	4 cut(s)	6, 9, 147, 425
BspANI	GGCC	3 cut(s)	288, 617, 904
BspCNI	CTCAG	1 cut(s)	912
BspHI	TCATGA	2 cut(s)	178, 888
BspLI	GGNNCC	4 cut(s)	135, 352, 429, 618
BspPI	GGATC	5 cut(s)	49, 128, 141, 612, 689
BspTNI	GGTCTC	1 cut(s)	137
BsrBI	CCGCTC	1 cut(s)	6
BsrFI	RCCGGY	1 cut(s)	521
BsrGI	TGTACA	1 cut(s)	43
BsrI	ACTGG	1 cut(s)	354
BssAI	RCCGGY	1 cut(s)	521
BssECI	CCNNGG	1 cut(s)	289
BssMI	GATC	8 cut(s)	54, 72, 133, 199, 604, 634, 694, 804
BssT1I	CCWWGG	1 cut(s)	289
Bst2UI	CCWGG	2 cut(s)	255, 396
BstAPI	GCANNNNNTGC	1 cut(s)	257
BstAUI	TGTACA	1 cut(s)	43
BstBAI	YACGTR	1 cut(s)	802
BstDEI	CTNAG	5 cut(s)	78, 411, 834, 861, 899
BstHHI	GCGC	1 cut(s)	262
BstKTI	GATC	8 cut(s)	57, 75, 136, 202, 607, 637, 697, 807
BstMAI	GTCTC	3 cut(s)	11, 137, 187
BstMBI	GATC	8 cut(s)	54, 72, 133, 199, 604, 634, 694, 804
BstMWI	GCNNNNNNNGC	4 cut(s)	257, 400, 434, 659
BstNI	CCWGG	2 cut(s)	255, 396
BstSCI	CCNGG	2 cut(s)	253, 394
BstSFI	CTRYAG	1 cut(s)	549
BstV1I	GCAGC	1 cut(s)	409
BstX2I	RGATCY	2 cut(s)	133, 694
BstYI	RGATCY	2 cut(s)	133, 694
BsuRI	GGCC	3 cut(s)	288, 617, 904
BtrI	CACGTC	1 cut(s)	197
CciI	TCATGA	2 cut(s)	178, 888
CfoI	GCGC	1 cut(s)	262
Cfr10I	RCCGGY	1 cut(s)	521
Cfr13I	GGNCC	1 cut(s)	616
CsiI	ACCWGGT	1 cut(s)	253
Csp6I	GTAC	2 cut(s)	44, 749
CviAII	CATG	4 cut(s)	179, 359, 497, 889
CviQI	GTAC	2 cut(s)	44, 749
DdeI	CTNAG	5 cut(s)	78, 411, 834, 861, 899
DpnI	GATC	8 cut(s)	56, 74, 135, 201, 606, 636, 696, 806
DpnII	GATC	8 cut(s)	54, 72, 133, 199, 604, 634, 694, 804
DraIII	CACNNNGTG	1 cut(s)	257
DriI	GACNNNNNGTC	1 cut(s)	492
EaeI	YGGCCR	1 cut(s)	286
Eam1105I	GACNNNNNGTC	1 cut(s)	492
Eco130I	CCWWGG	1 cut(s)	289
Eco31I	GGTCTC	1 cut(s)	137
Eco57I	CTGAAG	2 cut(s)	255, 675
Eco72I	CACGTG	1 cut(s)	802
EcoO109I	RGGNCCY	1 cut(s)	616
EcoRI	GAATTC	1 cut(s)	325
EcoRII	CCWGG	2 cut(s)	253, 394
EcoT14I	CCWWGG	1 cut(s)	289
ErhI	CCWWGG	1 cut(s)	289
Esp3I	CGTCTC	1 cut(s)	187
FaeI	CATG	4 cut(s)	182, 362, 500, 892
FaqI	GGGAC	1 cut(s)	499
FatI	CATG	4 cut(s)	178, 358, 496, 888
FbaI	TGATCA	2 cut(s)	634, 804
Fnu4HI	GCNGC	3 cut(s)	7, 423, 426
Fsp4HI	GCNGC	3 cut(s)	7, 423, 426
FspAI	RTGCGCAY	1 cut(s)	261
FspBI	CTAG	2 cut(s)	21, 492
FspI	TGCGCA	1 cut(s)	261
GlaI	GCGC	1 cut(s)	261
GluI	GCNGC	3 cut(s)	7, 423, 426
HaeIII	GGCC	3 cut(s)	288, 617, 904
HapII	CCGG	1 cut(s)	522
HhaI	GCGC	1 cut(s)	262
Hin1II	CATG	4 cut(s)	182, 362, 500, 892
Hin6I	GCGC	1 cut(s)	260
HinP1I	GCGC	1 cut(s)	260
HindIII	AAGCTT	2 cut(s)	83, 441
HinfI	GANTC	5 cut(s)	668, 743, 817, 850, 931
HpaII	CCGG	1 cut(s)	522
HphI	GGTGA	1 cut(s)	752
Hpy166II	GTNNAC	3 cut(s)	46, 384, 679
Hpy188III	TCNNGA	2 cut(s)	179, 889
Hpy8I	GTNNAC	3 cut(s)	46, 384, 679
Hpy99I	CGWCG	1 cut(s)	98
HpyAV	CCTTC	3 cut(s)	708, 887, 923
HpyCH4IV	ACGT	2 cut(s)	196, 801
HpyCH4V	TGCA	3 cut(s)	365, 533, 662
HpyF10VI	GCNNNNNNNGC	4 cut(s)	257, 400, 434, 659
HpyF3I	CTNAG	5 cut(s)	78, 411, 834, 861, 899
HpySE526I	ACGT	2 cut(s)	196, 801
Hsp92II	CATG	4 cut(s)	182, 362, 500, 892
HspAI	GCGC	1 cut(s)	260
Ksp22I	TGATCA	2 cut(s)	634, 804
Kzo9I	GATC	8 cut(s)	54, 72, 133, 199, 604, 634, 694, 804
LmnI	GCTCC	4 cut(s)	350, 433, 511, 545
Lsp1109I	GCAGC	1 cut(s)	409
LweI	GCATC	5 cut(s)	239, 298, 520, 587, 671
MabI	ACCWGGT	1 cut(s)	253
MaeI	CTAG	2 cut(s)	21, 492
MaeII	ACGT	2 cut(s)	196, 801
MaeIII	GTNAC	1 cut(s)	824
MalI	GATC	8 cut(s)	56, 74, 135, 201, 606, 636, 696, 806
MbiI	CCGCTC	1 cut(s)	6
MboI	GATC	8 cut(s)	54, 72, 133, 199, 604, 634, 694, 804
MboII	GAAGA	4 cut(s)	248, 294, 321, 632
MfeI	CAATTG	2 cut(s)	447, 840
MflI	RGATCY	2 cut(s)	133, 694
MhlI	GDGCHC	2 cut(s)	117, 128
MlsI	TGGCCA	1 cut(s)	288
MluCI	AATT	6 cut(s)	295, 325, 447, 646, 840, 918
MluNI	TGGCCA	1 cut(s)	288
MlyI	GAGTC	1 cut(s)	811
MnlI	CCTC	9 cut(s)	175, 237, 315, 333, 365, 526, 567, 793, 891
Mox20I	TGGCCA	1 cut(s)	288
MroXI	GAANNNNTTC	1 cut(s)	876
MscI	TGGCCA	1 cut(s)	288
MseI	TTAA	2 cut(s)	468, 599
MslI	CAYNNNNRTG	1 cut(s)	389
Msp20I	TGGCCA	1 cut(s)	288
MspI	CCGG	1 cut(s)	522
MspR9I	CCNGG	2 cut(s)	255, 396
MunI	CAATTG	2 cut(s)	447, 840
Mva1269I	GAATGC	1 cut(s)	453
MvaI	CCWGG	2 cut(s)	255, 396
MwoI	GCNNNNNNNGC	4 cut(s)	257, 400, 434, 659
NdeII	GATC	8 cut(s)	54, 72, 133, 199, 604, 634, 694, 804
NlaIII	CATG	4 cut(s)	182, 362, 500, 892
NlaIV	GGNNCC	4 cut(s)	135, 352, 429, 618
NmuCI	GTSAC	1 cut(s)	824
NsbI	TGCGCA	1 cut(s)	261
PagI	TCATGA	2 cut(s)	178, 888
PctI	GAATGC	1 cut(s)	453
PdmI	GAANNNNTTC	1 cut(s)	876
PfeI	GAWTC	4 cut(s)	668, 743, 850, 931
PkrI	GCNGC	3 cut(s)	8, 424, 427
PleI	GAGTC	1 cut(s)	811
PmaCI	CACGTG	1 cut(s)	802
PmlI	CACGTG	1 cut(s)	802
PpsI	GAGTC	1 cut(s)	811
Ppu21I	YACGTR	1 cut(s)	802
Psp6I	CCWGG	2 cut(s)	253, 394
PspCI	CACGTG	1 cut(s)	802
PspGI	CCWGG	2 cut(s)	253, 394
PspN4I	GGNNCC	4 cut(s)	135, 352, 429, 618
PspPI	GGNCC	1 cut(s)	616
PsuI	RGATCY	2 cut(s)	133, 694
RsaI	GTAC	2 cut(s)	45, 750
RsaNI	GTAC	2 cut(s)	44, 749
RseI	CAYNNNNRTG	1 cut(s)	389
SaqAI	TTAA	2 cut(s)	468, 599
SatI	GCNGC	3 cut(s)	7, 423, 426
Sau3AI	GATC	8 cut(s)	54, 72, 133, 199, 604, 634, 694, 804
Sau96I	GGNCC	1 cut(s)	616
SchI	GAGTC	1 cut(s)	811
ScrFI	CCNGG	2 cut(s)	255, 396
SduI	GDGCHC	2 cut(s)	117, 128
SexAI	ACCWGGT	1 cut(s)	253
SfaNI	GCATC	5 cut(s)	239, 298, 520, 587, 671
SfcI	CTRYAG	1 cut(s)	549
SmiMI	CAYNNNNRTG	1 cut(s)	389
SmlI	CTYRAG	1 cut(s)	116
SmoI	CTYRAG	1 cut(s)	116
Sse9I	AATT	6 cut(s)	295, 325, 447, 646, 840, 918
SsiI	CCGC	4 cut(s)	6, 9, 147, 425
SspMI	CTAG	2 cut(s)	21, 492
StyD4I	CCNGG	2 cut(s)	253, 394
StyI	CCWWGG	1 cut(s)	289
TaiI	ACGT	2 cut(s)	199, 804
TasI	AATT	6 cut(s)	295, 325, 447, 646, 840, 918
TatI	WGTACW	2 cut(s)	43, 748
TauI	GCSGC	2 cut(s)	9, 428
TfiI	GAWTC	4 cut(s)	668, 743, 850, 931
Tru1I	TTAA	2 cut(s)	468, 599
Tru9I	TTAA	2 cut(s)	468, 599
TseFI	GTSAC	1 cut(s)	824
TseI	GCWGC	1 cut(s)	422
Tsp45I	GTSAC	1 cut(s)	824
TspDTI	ATGAA	2 cut(s)	114, 167
XapI	RAATTY	2 cut(s)	325, 646
XmnI	GAANNNNTTC	1 cut(s)	876
XspI	CTAG	2 cut(s)	21, 492

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.