Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0010551

Physical Location & Seq

Genomic Coordinates Reverse (-)

84892350 .. 84898335

Gene Structure 5986 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG501400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2256 bp

ATGAGCGGCGGTGGGGAGACTAGGGTTTCAATCCCAGACAATGTACACAGCACGATCCAAAACATCAGAGAGATCACTAAGAAGCTTCACAGCGACGATGAAATCTATGCTGTGCTCAAGGAGTGCTCTATGGATCCCAACGAGACCGCCCAGAAGCTCTTGTATTTAGATACATTTCATGAGGTCAAAAAGAGACGTGATCGGAGAAAGGAGAACCTGAAAGGCAGGGCATCTGAAGATTCAAGGACAGCACCAGGTGCGCACAGGCGAATGGTCAGGGGTGGTGGCCAAGGGAATTATTCTTCTGATGCTGGTGGTGGGAGGAATTCTTCTGCTCGGAGGGAAAATGGAGCCAGTCATGTTGCAGATGGAGGTTCTCTGTCCTCTTTTATGCCAGGTCAGCAGAAAACTAAGAACATTGCTGCGGCTCCAATCGCAAAAGCTTCAATTGGCATTCCAAACGGGATTAAAAACCTGTCAAATGGGACTTCTAGTCCTGTTTCTGTTCCAAAATCCTCTGCCGGTGTAGATGCAAACAAGTTGGGAGCTACAGCACCTCGTTATGCTGTCGTTGTGGCATCTACACCTGTTGTTGGCTTAAAGGATCAACGCAAGGCCCCAACAACTACATCTGATCATCTTCCAAATTCTGCCACTTCAGCATCTGATTCTGGTGTTTACTCATCTGCTTCAGATCCTTCCTTATCAACTCATATACCAGAAAACAAAGATGTTTCTGGTGAATCTGTTGTCATAGAGTTGTCAAAGAGTGAAAATGTTGCCTCCAAATCTGATAATCACGTGATCAAAGAAAAGACTCAAAGTGACAATGCTAAGGCAATTGGAAAGAATCGGCATACTAAGTCGTCAGAACCCCCTTCCTCAACTCATGATGGTTCTCAGGCCATTCTGCCTTCTAATTCTGATGGAGAATCACAGATAGAGTCGACTGATGCTTTGAAAGTGGCCAAACTGGAGGTTGAAACAGTTGCTGTTAAACCTTCTTCTCAGTTGCCACCTGACTCGAGTCTCTCAGATACCAAACTTGTTACTTTTCCAAATCATATCAAGGTCCCTGAATCTTTAAGAAATGTTTTGACTTTTGGAAGTATTAATTCTACTTTTGGAACGAGTGTTGACTGCGTTAACGGTACTGGTGGCAATGGTTCTACGGGCGGTGTAGAATCTTCTCAGGATACTGATGAAACTGCTAAAGAGCCTTCTCCTAGCAATAACAGTGTAGCCTCATCTGTTCAAGGAGATTTTTCAGAGAATCCACTGCCTTCACCAAATGTTCTTGAAAAGTTGCAACCACCTGAGGGTAATGTCTCTTCAGAGAGTAATGTCCCTTCAGCCCCTGACTCAGACTCCAAAAGTGAACTGTTGAAGCAGGATTTGCAGTTGGCTCCAGAAGTTCCACATAACCTTACTGCTCTAAATGGCCCCAGCTATAGTCTTGGTTTTTTGCCACCGATGCTAGGAGGCCAGGTTTTACAAGTGGAAGGACATGATAATCAGGCACCTGAAGCACCTCGGGTTTCGAACTTTGGTGGAAATTCTGTTGGTGTTCCCAGCCCAAATACAACCCCACCCCTGCCAAGCTCCATAGCTGCTTCTCCACAGATTCCTGTTTTCAGGCATGCATATCCCGCTAATTATTTCCCATATGGCTATCTCCCGCCGTATTATCTGCCACCAATGCACCAGTTTTTAAGCCCCAATGGCTTTCCTCCACAGCCTTCAGCATATCTACCACCAACAGCACCAGCTGCTGCTGGGATTAAATATCCTCCTCCCCAGTTCAAGGCAGGGAACAATGCTGGAAATCCACCCCAGTATAACATTCAATCCGGTGGTTCATTCATAACCACCCCTGCTGGTTATGCTCCTGGTTCAGCAGTTACATCTGGAAGCTCAGTTGGTAACACTGAAGATCTTGGAGCATCTCAATCGAAAGAAAGTCATATCTACACTACAGGACAGCTGACTGAGGGTTCAACTGTTTGGATTCATACTCCTGGACAAGATATCAGTTCTCTGTACAACCTTCCTCAGGGGCAACGCTTCGCGTTCTCGCCTGTCCATGCTGGTCATGGTGCCATGACTGGACTTTATCCACCAGGGCAAACGATGGCTTCTCCAACATATCTGCAACAGTCCCAGGCTGTGGCTGGAGCTGCTGAGACCATAGGACCCCCACCTGCTGCTTATCAGCAGCCTCAACATGCACAGATGAATTGGAACAGTAGTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0008150 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043388 GO:0044093 GO:0044424 GO:0044464 GO:0051082 GO:0051098 GO:0051099 GO:0051101 GO:0065007 GO:0065009

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1296

Protein Analysis

751

Amino Acids

78.53

Weight (kDa)

6.07

Isoelectric Point (pI)

58.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GIP1_N	PF06972	11 - 71	2e-30	GBF-interacting protein 1 N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010551)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g42501
malus_domestica	MD03G1031400.v1.1 MD11G1035700.v1.1
prunus_persica	Prupe.6G026700_v2.0.a1 Prupe.6G026700_v2.0.a1
pyrus_communis	pycom03g02550 pycom11g02960
rosa_chinensis	RchiOBHm_Chr5g0076171 RchiOBHm_Chr5g0076181
rosa_laevigata	RLG00000036607
rosa_multiflora	Rmu_co8110220.1_g000001 Rmu_sc0003601.1_g000003 Rmu_sc0037654.1_g000001 Rmu_ssc0000123.1_g000003
rosa_roxburghii	Rroxscaffold_1G00005640
rosa_rugosa	Rorug05G0445300
rosa_samantha	Rh5AG501400 Rh5BG522900 Rh5CG546700 Rh5DG535300
rosa_wichuraiana	Rw5G046540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	2209
Acc16I	TGCGCA	1 cut(s)	261
Acc36I	ACCTGC	1 cut(s)	2209
AccB1I	GGYRCC	2 cut(s)	1519, 2096
AccB7I	CCANNNNNTGG	1 cut(s)	2167
AccBSI	CCGCTC	1 cut(s)	6
AccI	GTMKAC	1 cut(s)	947
AccII	CGCG	1 cut(s)	2069
AciI	CCGC	7 cut(s)	6, 9, 147, 425, 1176, 1650, 1679
AclWI	GGATC	5 cut(s)	49, 128, 141, 612, 689
AcoI	YGGCCR	2 cut(s)	286, 966
AcsI	RAATTY	3 cut(s)	325, 646, 1555
AcuI	CTGAAG	8 cut(s)	255, 642, 675, 1317, 1335, 1545, 1725, 1950
AcvI	CACGTG	1 cut(s)	802
AdeI	CACNNNGTG	1 cut(s)	257
AfaI	GTAC	3 cut(s)	45, 1153, 2042
AfiI	CCNNNNNNNGG	6 cut(s)	593, 1319, 1478, 1804, 2053, 2167
AhdI	GACNNNNNGTC	1 cut(s)	492
AjiI	CACGTC	1 cut(s)	197
AjnI	CCWGG	7 cut(s)	253, 394, 1485, 1888, 2017, 2119, 2160
Alw21I	GWGCWC	2 cut(s)	117, 128
Alw26I	GTCTC	6 cut(s)	11, 137, 187, 1034, 1333, 2177
AlwI	GGATC	5 cut(s)	49, 128, 141, 612, 689
AlwNI	CAGNNNCTG	4 cut(s)	665, 992, 1358, 1772
Ama87I	CYCGRG	2 cut(s)	1024, 1533
AoxI	GGCC	6 cut(s)	286, 615, 903, 966, 1441, 1483
ApeKI	GCWGC	7 cut(s)	422, 1610, 1769, 1772, 2177, 2204, 2215
ApoI	RAATTY	3 cut(s)	325, 646, 1555
ArsI	GACNNNNNNTTYG	2 cut(s)	940, 972
AseI	ATTAAT	1 cut(s)	1113
AspLEI	GCGC	1 cut(s)	262
AspS9I	GGNCC	4 cut(s)	616, 1072, 1442, 2192
AsuHPI	GGTGA	2 cut(s)	752, 1278
AsuII	TTCGAA	1 cut(s)	1541
AvaI	CYCGRG	2 cut(s)	1024, 1533
AvaII	GGWCC	2 cut(s)	1072, 2192
AxyI	CCTNAGG	2 cut(s)	1317, 2052
BalI	TGGCCA	2 cut(s)	288, 968
BamHI	GGATCC	1 cut(s)	133
BanI	GGYRCC	2 cut(s)	1519, 2096
BarI	GAAGNNNNNNTAC	4 cut(s)	1315, 1333, 1347, 1365
BbrPI	CACGTG	1 cut(s)	802
Bbv12I	GWGCWC	2 cut(s)	117, 128
BbvI	GCAGC	7 cut(s)	409, 1597, 1756, 1759, 2164, 2191, 2227
BccI	CCATC	4 cut(s)	362, 887, 920, 2125
BceAI	ACGGC	1 cut(s)	1666
BcgI	CGANNNNNNTGC	2 cut(s)	1932, 1966
BciT130I	CCWGG	7 cut(s)	255, 396, 1487, 1890, 2019, 2121, 2162
BciVI	GTATCC	1 cut(s)	1189
BclI	TGATCA	2 cut(s)	634, 804
BcoDI	GTCTC	6 cut(s)	11, 137, 187, 1034, 1333, 2177
BfaI	CTAG	4 cut(s)	21, 492, 1227, 1478
BfmI	CTRYAG	3 cut(s)	549, 1450, 1974
BfuAI	ACCTGC	1 cut(s)	2209
BfuI	GTATCC	1 cut(s)	1189
BglI	GCCNNNNNGGC	1 cut(s)	1722
BglII	AGATCT	1 cut(s)	1933
BisI	GCNGC	9 cut(s)	7, 423, 426, 1611, 1770, 1773, 2178, 2205, 2216
BlsI	GCNGC	9 cut(s)	8, 424, 427, 1612, 1771, 1774, 2179, 2206, 2217
Bme1390I	CCNGG	7 cut(s)	255, 396, 1487, 1890, 2019, 2121, 2162
Bme18I	GGWCC	2 cut(s)	1072, 2192
BmeRI	GACNNNNNGTC	1 cut(s)	492
BmeT110I	CYCGRG	2 cut(s)	1024, 1533
BmgBI	CACGTC	1 cut(s)	197
BmgT120I	GGNCC	4 cut(s)	616, 1072, 1442, 2192
BmrFI	CCNGG	7 cut(s)	255, 396, 1487, 1890, 2019, 2121, 2162
BmrI	ACTGGG	2 cut(s)	1792, 1828
BmsI	GCATC	8 cut(s)	239, 298, 520, 587, 671, 943, 1464, 1952
BmuI	ACTGGG	2 cut(s)	1792, 1828
BoxI	GACNNNNGTC	1 cut(s)	1026
BpmI	CTGGAG	3 cut(s)	995, 1392, 2193
Bpu10I	CCTNAGC	1 cut(s)	834
Bpu14I	TTCGAA	1 cut(s)	1541
BpuEI	CTTGAG	1 cut(s)	101
BsaAI	YACGTR	1 cut(s)	802
BsaI	GGTCTC	2 cut(s)	137, 2177
BsaJI	CCNNGG	4 cut(s)	289, 1532, 2120, 2160
BsaWI	WCCGGW	1 cut(s)	1850
BsaXI	ACNNNNNCTCC	4 cut(s)	1352, 1382, 1473, 1503
Bsc4I	CCNNNNNNNGG	6 cut(s)	593, 1319, 1478, 1804, 2053, 2167
Bse118I	RCCGGY	1 cut(s)	521
Bse1I	ACTGG	7 cut(s)	354, 978, 1159, 1705, 1798, 1834, 2110
Bse21I	CCTNAGG	2 cut(s)	1317, 2052
Bse3DI	GCAATG	2 cut(s)	417, 1168
BseBI	CCWGG	7 cut(s)	255, 396, 1487, 1890, 2019, 2121, 2162
BseDI	CCNNGG	4 cut(s)	289, 1532, 2120, 2160
BseLI	CCNNNNNNNGG	6 cut(s)	593, 1319, 1478, 1804, 2053, 2167
BseMI	GCAATG	2 cut(s)	417, 1168
BseNI	ACTGG	7 cut(s)	354, 978, 1159, 1705, 1798, 1834, 2110
BseRI	GAGGAG	1 cut(s)	1782
BseXI	GCAGC	7 cut(s)	409, 1597, 1756, 1759, 2164, 2191, 2227
BseYI	CCCAGC	3 cut(s)	1445, 1571, 1775
Bsh1236I	CGCG	1 cut(s)	2069
BshFI	GGCC	6 cut(s)	288, 617, 905, 968, 1443, 1485
BshNI	GGYRCC	2 cut(s)	1519, 2096
BsiHKAI	GWGCWC	2 cut(s)	117, 128
BsiHKCI	CYCGRG	2 cut(s)	1024, 1533
BsiSI	CCGG	2 cut(s)	522, 1851
BslFI	GGGAC	4 cut(s)	499, 1058, 1331, 2143
BslI	CCNNNNNNNGG	6 cut(s)	593, 1319, 1478, 1804, 2053, 2167
BsmAI	GTCTC	6 cut(s)	11, 137, 187, 1034, 1333, 2177
BsmBI	CGTCTC	1 cut(s)	187
BsmFI	GGGAC	4 cut(s)	499, 1058, 1331, 2143
BsmI	GAATGC	1 cut(s)	453
BsnI	GGCC	6 cut(s)	288, 617, 905, 968, 1443, 1485
Bso31I	GGTCTC	2 cut(s)	137, 2177
BsoBI	CYCGRG	2 cut(s)	1024, 1533
Bsp119I	TTCGAA	1 cut(s)	1541
Bsp1286I	GDGCHC	2 cut(s)	117, 128
Bsp1407I	TGTACA	2 cut(s)	43, 2040
Bsp143I	GATC	9 cut(s)	54, 72, 133, 199, 604, 634, 694, 804, 1933
BspACI	CCGC	7 cut(s)	6, 9, 147, 425, 1176, 1650, 1679
BspANI	GGCC	6 cut(s)	288, 617, 905, 968, 1443, 1485
BspFNI	CGCG	1 cut(s)	2069
BspHI	TCATGA	2 cut(s)	178, 889
BspMI	ACCTGC	1 cut(s)	2209
BspPI	GGATC	5 cut(s)	49, 128, 141, 612, 689
BspT104I	TTCGAA	1 cut(s)	1541
BspT107I	GGYRCC	2 cut(s)	1519, 2096
BspTNI	GGTCTC	2 cut(s)	137, 2177
BsrBI	CCGCTC	1 cut(s)	6
BsrDI	GCAATG	2 cut(s)	417, 1168
BsrFI	RCCGGY	1 cut(s)	521
BsrGI	TGTACA	2 cut(s)	43, 2040
BsrI	ACTGG	7 cut(s)	354, 978, 1159, 1705, 1798, 1834, 2110
BssAI	RCCGGY	1 cut(s)	521
BssECI	CCNNGG	4 cut(s)	289, 1532, 2120, 2160
BssMI	GATC	9 cut(s)	54, 72, 133, 199, 604, 634, 694, 804, 1933
BssT1I	CCWWGG	1 cut(s)	289
Bst2UI	CCWGG	7 cut(s)	255, 396, 1487, 1890, 2019, 2121, 2162
Bst4CI	ACNGT	7 cut(s)	988, 1151, 1238, 1383, 2002, 2157, 2246
Bst6I	CTCTTC	1 cut(s)	1336
BstAPI	GCANNNNNTGC	3 cut(s)	257, 1396, 1769
BstAUI	TGTACA	2 cut(s)	43, 2040
BstBAI	YACGTR	1 cut(s)	802
BstBI	TTCGAA	1 cut(s)	1541
BstC8I	GCNNGC	1 cut(s)	1641
BstENI	CCTNNNNNAGG	1 cut(s)	2051
BstFNI	CGCG	1 cut(s)	2069
BstHHI	GCGC	1 cut(s)	262
BstKTI	GATC	9 cut(s)	57, 75, 136, 202, 607, 637, 697, 807, 1936
BstMAI	GTCTC	6 cut(s)	11, 137, 187, 1034, 1333, 2177
BstMBI	GATC	9 cut(s)	54, 72, 133, 199, 604, 634, 694, 804, 1933
BstNI	CCWGG	7 cut(s)	255, 396, 1487, 1890, 2019, 2121, 2162
BstNSI	RCATGY	2 cut(s)	1643, 2228
BstPAI	GACNNNNGTC	1 cut(s)	1026
BstSCI	CCNGG	7 cut(s)	253, 394, 1485, 1888, 2017, 2119, 2160
BstSFI	CTRYAG	3 cut(s)	549, 1450, 1974
BstUI	CGCG	1 cut(s)	2069
BstV1I	GCAGC	7 cut(s)	409, 1597, 1756, 1759, 2164, 2191, 2227
BstX2I	RGATCY	3 cut(s)	133, 694, 1933
BstYI	RGATCY	3 cut(s)	133, 694, 1933
Bsu36I	CCTNAGG	2 cut(s)	1317, 2052
BsuI	GTATCC	1 cut(s)	1189
BsuRI	GGCC	6 cut(s)	288, 617, 905, 968, 1443, 1485
BtrI	CACGTC	1 cut(s)	197
BtsI	GCAGTG	1 cut(s)	1277
BtsIMutI	CAGTG	3 cut(s)	1243, 1277, 1926
BveI	ACCTGC	1 cut(s)	2209
Cac8I	GCNNGC	1 cut(s)	1641
CaiI	CAGNNNCTG	4 cut(s)	665, 992, 1358, 1772
CciI	TCATGA	2 cut(s)	178, 889
CfoI	GCGC	1 cut(s)	262
Cfr10I	RCCGGY	1 cut(s)	521
Cfr13I	GGNCC	4 cut(s)	616, 1072, 1442, 2192
CsiI	ACCWGGT	1 cut(s)	253
Csp6I	GTAC	3 cut(s)	44, 1152, 2041
CviAII	CATG	9 cut(s)	179, 359, 890, 1508, 1640, 2084, 2093, 2101, 2225
CviQI	GTAC	3 cut(s)	44, 1152, 2041
DpnI	GATC	9 cut(s)	56, 74, 135, 201, 606, 636, 696, 806, 1935
DpnII	GATC	9 cut(s)	54, 72, 133, 199, 604, 634, 694, 804, 1933
DraIII	CACNNNGTG	1 cut(s)	257
DriI	GACNNNNNGTC	1 cut(s)	492
EaeI	YGGCCR	2 cut(s)	286, 966
Eam1104I	CTCTTC	1 cut(s)	1336
Eam1105I	GACNNNNNGTC	1 cut(s)	492
EarI	CTCTTC	1 cut(s)	1336
Eco130I	CCWWGG	1 cut(s)	289
Eco31I	GGTCTC	2 cut(s)	137, 2177
Eco32I	GATATC	1 cut(s)	2029
Eco47I	GGWCC	2 cut(s)	1072, 2192
Eco57I	CTGAAG	8 cut(s)	255, 642, 675, 1317, 1335, 1545, 1725, 1950
Eco72I	CACGTG	1 cut(s)	802
Eco81I	CCTNAGG	2 cut(s)	1317, 2052
Eco88I	CYCGRG	2 cut(s)	1024, 1533
EcoNI	CCTNNNNNAGG	1 cut(s)	2051
EcoO109I	RGGNCCY	3 cut(s)	616, 1072, 2192
EcoRI	GAATTC	1 cut(s)	325
EcoRII	CCWGG	7 cut(s)	253, 394, 1485, 1888, 2017, 2119, 2160
EcoRV	GATATC	1 cut(s)	2029
EcoT14I	CCWWGG	1 cut(s)	289
EcoT22I	ATGCAT	1 cut(s)	1645
ErhI	CCWWGG	1 cut(s)	289
Esp3I	CGTCTC	1 cut(s)	187
FaeI	CATG	9 cut(s)	182, 362, 893, 1511, 1643, 2087, 2096, 2104, 2228
FaqI	GGGAC	4 cut(s)	499, 1058, 1331, 2143
FatI	CATG	9 cut(s)	178, 358, 889, 1507, 1639, 2083, 2092, 2100, 2224
FauI	CCCGC	2 cut(s)	1657, 1686
FauNDI	CATATG	1 cut(s)	1666
FbaI	TGATCA	2 cut(s)	634, 804
FblI	GTMKAC	1 cut(s)	947
Fnu4HI	GCNGC	9 cut(s)	7, 423, 426, 1611, 1770, 1773, 2178, 2205, 2216
Fsp4HI	GCNGC	9 cut(s)	7, 423, 426, 1611, 1770, 1773, 2178, 2205, 2216
FspAI	RTGCGCAY	1 cut(s)	261
FspBI	CTAG	4 cut(s)	21, 492, 1227, 1478
FspI	TGCGCA	1 cut(s)	261
GlaI	GCGC	1 cut(s)	261
GluI	GCNGC	9 cut(s)	7, 423, 426, 1611, 1770, 1773, 2178, 2205, 2216
GsaI	CCCAGC	3 cut(s)	1449, 1575, 1779
GsuI	CTGGAG	3 cut(s)	995, 1392, 2193
HaeIII	GGCC	6 cut(s)	288, 617, 905, 968, 1443, 1485
HapII	CCGG	2 cut(s)	522, 1851
HhaI	GCGC	1 cut(s)	262
Hin1II	CATG	9 cut(s)	182, 362, 893, 1511, 1643, 2087, 2096, 2104, 2228
Hin6I	GCGC	1 cut(s)	260
HinP1I	GCGC	1 cut(s)	260
HincII	GTYRAC	3 cut(s)	948, 1138, 1147
HindII	GTYRAC	3 cut(s)	948, 1138, 1147
HindIII	AAGCTT	2 cut(s)	83, 441
HpaI	GTTAAC	1 cut(s)	1147
HpaII	CCGG	2 cut(s)	522, 1851
HphI	GGTGA	2 cut(s)	752, 1278
Hpy166II	GTNNAC	6 cut(s)	46, 679, 948, 1138, 1147, 1379
Hpy188III	TCNNGA	6 cut(s)	179, 890, 1193, 1298, 1409, 1908
Hpy8I	GTNNAC	6 cut(s)	46, 679, 948, 1138, 1147, 1379
Hpy99I	CGWCG	1 cut(s)	98
HpyCH4III	ACNGT	7 cut(s)	988, 1151, 1238, 1383, 2002, 2157, 2246
HpyCH4IV	ACGT	2 cut(s)	196, 801
HpyCH4V	TGCA	8 cut(s)	365, 533, 1309, 1399, 1643, 1702, 2152, 2228
HpySE526I	ACGT	2 cut(s)	196, 801
Hsp92II	CATG	9 cut(s)	182, 362, 893, 1511, 1643, 2087, 2096, 2104, 2228
HspAI	GCGC	1 cut(s)	260
Ksp22I	TGATCA	2 cut(s)	634, 804
KspAI	GTTAAC	1 cut(s)	1147
Kzo9I	GATC	9 cut(s)	54, 72, 133, 199, 604, 634, 694, 804, 1933
LmnI	GCTCC	8 cut(s)	350, 433, 545, 1411, 1607, 1891, 1940, 2174
Lsp1109I	GCAGC	7 cut(s)	409, 1597, 1756, 1759, 2164, 2191, 2227
LweI	GCATC	8 cut(s)	239, 298, 520, 587, 671, 943, 1464, 1952
MabI	ACCWGGT	1 cut(s)	253
MaeI	CTAG	4 cut(s)	21, 492, 1227, 1478
MaeII	ACGT	2 cut(s)	196, 801
MaeIII	GTNAC	4 cut(s)	824, 1048, 1900, 1922
MalI	GATC	9 cut(s)	56, 74, 135, 201, 606, 636, 696, 806, 1935
MbiI	CCGCTC	1 cut(s)	6
MboI	GATC	9 cut(s)	54, 72, 133, 199, 604, 634, 694, 804, 1933
MboII	GAAGA	8 cut(s)	248, 294, 321, 632, 996, 1179, 1323, 1943
MfeI	CAATTG	2 cut(s)	447, 840
MflI	RGATCY	3 cut(s)	133, 694, 1933
MhlI	GDGCHC	2 cut(s)	117, 128
MlsI	TGGCCA	2 cut(s)	288, 968
MluNI	TGGCCA	2 cut(s)	288, 968
MlyI	GAGTC	6 cut(s)	811, 953, 1016, 1036, 1355, 1361
MmeI	TCCRAC	1 cut(s)	2165
Mox20I	TGGCCA	2 cut(s)	288, 968
Mph1103I	ATGCAT	1 cut(s)	1645
MscI	TGGCCA	2 cut(s)	288, 968
MseI	TTAA	8 cut(s)	468, 599, 996, 1085, 1113, 1146, 1712, 1782
Msp20I	TGGCCA	2 cut(s)	288, 968
MspA1I	CMGCKG	2 cut(s)	1769, 1984
MspI	CCGG	2 cut(s)	522, 1851
MspR9I	CCNGG	7 cut(s)	255, 396, 1487, 1890, 2019, 2121, 2162
MunI	CAATTG	2 cut(s)	447, 840
Mva1269I	GAATGC	1 cut(s)	453
MvaI	CCWGG	7 cut(s)	255, 396, 1487, 1890, 2019, 2121, 2162
MvnI	CGCG	1 cut(s)	2069
NdeI	CATATG	1 cut(s)	1666
NdeII	GATC	9 cut(s)	54, 72, 133, 199, 604, 634, 694, 804, 1933
NlaIII	CATG	9 cut(s)	182, 362, 893, 1511, 1643, 2087, 2096, 2104, 2228
NmuCI	GTSAC	1 cut(s)	824
NsbI	TGCGCA	1 cut(s)	261
NsiI	ATGCAT	1 cut(s)	1645
NspI	RCATGY	2 cut(s)	1643, 2228
NspV	TTCGAA	1 cut(s)	1541
PaeI	GCATGC	1 cut(s)	1643
PaeR7I	CTCGAG	1 cut(s)	1024
PagI	TCATGA	2 cut(s)	178, 889
PaqCI	CACCTGC	1 cut(s)	2209
PctI	GAATGC	1 cut(s)	453
PflMI	CCANNNNNTGG	1 cut(s)	2167
PfoI	TCCNGGA	1 cut(s)	2017
PkrI	GCNGC	9 cut(s)	8, 424, 427, 1612, 1771, 1774, 2179, 2206, 2217
PleI	GAGTC	6 cut(s)	811, 952, 1016, 1035, 1355, 1361
PmaCI	CACGTG	1 cut(s)	802
PmlI	CACGTG	1 cut(s)	802
PpsI	GAGTC	6 cut(s)	811, 952, 1016, 1035, 1355, 1361
Ppu21I	YACGTR	1 cut(s)	802
PpuMI	RGGWCCY	2 cut(s)	1072, 2192
PshAI	GACNNNNGTC	1 cut(s)	1026
PshBI	ATTAAT	1 cut(s)	1113
Psp5II	RGGWCCY	2 cut(s)	1072, 2192
Psp6I	CCWGG	7 cut(s)	253, 394, 1485, 1888, 2017, 2119, 2160
PspCI	CACGTG	1 cut(s)	802
PspFI	CCCAGC	3 cut(s)	1445, 1571, 1775
PspGI	CCWGG	7 cut(s)	253, 394, 1485, 1888, 2017, 2119, 2160
PspPI	GGNCC	4 cut(s)	616, 1072, 1442, 2192
PspPPI	RGGWCCY	2 cut(s)	1072, 2192
PspXI	VCTCGAGB	1 cut(s)	1024
PstNI	CAGNNNCTG	4 cut(s)	665, 992, 1358, 1772
PsuI	RGATCY	3 cut(s)	133, 694, 1933
PvuII	CAGCTG	2 cut(s)	1769, 1984
RsaI	GTAC	3 cut(s)	45, 1153, 2042
RsaNI	GTAC	3 cut(s)	44, 1152, 2041
SalI	GTCGAC	1 cut(s)	946
SaqAI	TTAA	8 cut(s)	468, 599, 996, 1085, 1113, 1146, 1712, 1782
SatI	GCNGC	9 cut(s)	7, 423, 426, 1611, 1770, 1773, 2178, 2205, 2216
Sau3AI	GATC	9 cut(s)	54, 72, 133, 199, 604, 634, 694, 804, 1933
Sau96I	GGNCC	4 cut(s)	616, 1072, 1442, 2192
SchI	GAGTC	6 cut(s)	811, 953, 1016, 1036, 1355, 1361
ScrFI	CCNGG	7 cut(s)	255, 396, 1487, 1890, 2019, 2121, 2162
SduI	GDGCHC	2 cut(s)	117, 128
SexAI	ACCWGGT	1 cut(s)	253
SfaNI	GCATC	8 cut(s)	239, 298, 520, 587, 671, 943, 1464, 1952
SfcI	CTRYAG	3 cut(s)	549, 1450, 1974
Sfr274I	CTCGAG	1 cut(s)	1024
SfuI	TTCGAA	1 cut(s)	1541
SinI	GGWCC	2 cut(s)	1072, 2192
SlaI	CTCGAG	1 cut(s)	1024
SmlI	CTYRAG	2 cut(s)	116, 1024
SmoI	CTYRAG	2 cut(s)	116, 1024
SphI	GCATGC	1 cut(s)	1643
SsiI	CCGC	7 cut(s)	6, 9, 147, 425, 1176, 1650, 1679
SspMI	CTAG	4 cut(s)	21, 492, 1227, 1478
StyD4I	CCNGG	7 cut(s)	253, 394, 1485, 1888, 2017, 2119, 2160
StyI	CCWWGG	1 cut(s)	289
TaaI	ACNGT	7 cut(s)	988, 1151, 1238, 1383, 2002, 2157, 2246
TaiI	ACGT	2 cut(s)	199, 804
TaqI	TCGA	4 cut(s)	947, 1025, 1541, 1952
TatI	WGTACW	2 cut(s)	43, 2040
TauI	GCSGC	2 cut(s)	9, 428
Tru1I	TTAA	8 cut(s)	468, 599, 996, 1085, 1113, 1146, 1712, 1782
Tru9I	TTAA	8 cut(s)	468, 599, 996, 1085, 1113, 1146, 1712, 1782
TscAI	CASTG	3 cut(s)	1243, 1284, 1933
TseFI	GTSAC	1 cut(s)	824
TseI	GCWGC	7 cut(s)	422, 1610, 1769, 1772, 2177, 2204, 2215
Tsp45I	GTSAC	1 cut(s)	824
TspDTI	ATGAA	7 cut(s)	114, 167, 1218, 1848, 1852, 2000, 2249
TspRI	CASTG	3 cut(s)	1243, 1284, 1933
Van91I	CCANNNNNTGG	1 cut(s)	2167
VpaK11BI	GGWCC	2 cut(s)	1072, 2192
VspI	ATTAAT	1 cut(s)	1113
XagI	CCTNNNNNAGG	1 cut(s)	2051
XapI	RAATTY	3 cut(s)	325, 646, 1555
XceI	RCATGY	2 cut(s)	1643, 2228
XcmI	CCANNNNNNNNNTGG	2 cut(s)	2090, 2168
XhoI	CTCGAG	1 cut(s)	1024
XmiI	GTMKAC	1 cut(s)	947
XspI	CTAG	4 cut(s)	21, 492, 1227, 1478
Zsp2I	ATGCAT	1 cut(s)	1645

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.