Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0037654.1

Orthogroup ID

OG0010551

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 857

Gene Structure 857 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0037654.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 550 bp

tggccaaactggaggttgaaacagttgctgttaaaccttcttctcagttgccacctgactcgagtctctcagataccaaacttgttacttttccaaatcatatcaaggtccctgaatctttaagaaatgttttgacttttggaagtattaattctacttttggaacgagtgttgactgcgttaacggtactggtggcaatggttctacgggcggtgtagaatcttctcaggatactgatgaaactgctaaagagccttctcctagcaataacagtgtagcctcatctgttcaaggagatttttcagagaatccactgccttcaccaagtgttcttgaaaagttgcaaccacctgagggtaatgtctcttcagagagtaatgtcccttcagcccctgactcggactccaaaagtgaactgttgaagcaggatttgcagttgcctccagaagttccacataaccttagtgctctaaatggccccagctatagtcttggttttttgccaccgatgctaggaggccaggttatacaagtggaaggacatgataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0008150 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043388 GO:0044093 GO:0044424 GO:0044464 GO:0051082 GO:0051098 GO:0051099 GO:0051101 GO:0065007 GO:0065009

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1296

Protein Analysis

182

Amino Acids

18.88

Weight (kDa)

4.36

Isoelectric Point (pI)

59.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010551)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g42501
malus_domestica	MD03G1031400.v1.1 MD11G1035700.v1.1
prunus_persica	Prupe.6G026700_v2.0.a1 Prupe.6G026700_v2.0.a1
pyrus_communis	pycom03g02550 pycom11g02960
rosa_chinensis	RchiOBHm_Chr5g0076171 RchiOBHm_Chr5g0076181
rosa_laevigata	RLG00000036607
rosa_multiflora	Rmu_co8110220.1_g000001 Rmu_sc0003601.1_g000003 Rmu_sc0037654.1_g000001 Rmu_ssc0000123.1_g000003
rosa_roxburghii	Rroxscaffold_1G00005640
rosa_rugosa	Rorug05G0445300
rosa_samantha	Rh5AG501400 Rh5BG522900 Rh5CG546700 Rh5DG535300
rosa_wichuraiana	Rw5G046540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	212
AcoI	YGGCCR	1 cut(s)	2
AcuI	CTGAAG	2 cut(s)	353, 371
AdeI	CACNNNGTG	1 cut(s)	328
AfaI	GTAC	1 cut(s)	189
AfiI	CCNNNNNNNGG	3 cut(s)	355, 399, 514
AgsI	TTSAA	4 cut(s)	19, 292, 337, 423
AjnI	CCWGG	1 cut(s)	521
AluBI	AGCT	1 cut(s)	485
AluI	AGCT	1 cut(s)	485
Alw21I	GWGCWC	1 cut(s)	471
Alw26I	GTCTC	2 cut(s)	70, 369
AlwNI	CAGNNNCTG	2 cut(s)	28, 394
Ama87I	CYCGRG	1 cut(s)	60
AoxI	GGCC	3 cut(s)	2, 477, 519
AseI	ATTAAT	1 cut(s)	149
AspS9I	GGNCC	2 cut(s)	108, 478
AsuHPI	GGTGA	1 cut(s)	314
AvaI	CYCGRG	1 cut(s)	60
AvaII	GGWCC	1 cut(s)	108
AxyI	CCTNAGG	1 cut(s)	353
BalI	TGGCCA	1 cut(s)	4
BarI	GAAGNNNNNNTAC	4 cut(s)	351, 369, 383, 401
Bbv12I	GWGCWC	1 cut(s)	471
BciT130I	CCWGG	1 cut(s)	523
BciVI	GTATCC	1 cut(s)	225
BcoDI	GTCTC	2 cut(s)	70, 369
BfaI	CTAG	2 cut(s)	263, 514
BfmI	CTRYAG	1 cut(s)	486
BfuI	GTATCC	1 cut(s)	225
Bme1390I	CCNGG	1 cut(s)	523
Bme18I	GGWCC	1 cut(s)	108
BmeT110I	CYCGRG	1 cut(s)	60
BmgT120I	GGNCC	2 cut(s)	108, 478
BmiI	GGNNCC	2 cut(s)	110, 480
BmrFI	CCNGG	1 cut(s)	523
BmsI	GCATC	1 cut(s)	500
BoxI	GACNNNNGTC	1 cut(s)	62
BpmI	CTGGAG	2 cut(s)	31, 428
BsaXI	ACNNNNNCTCC	4 cut(s)	388, 418, 509, 539
Bsc4I	CCNNNNNNNGG	3 cut(s)	355, 399, 514
Bse1I	ACTGG	2 cut(s)	14, 195
Bse21I	CCTNAGG	1 cut(s)	353
Bse3DI	GCAATG	1 cut(s)	204
BseBI	CCWGG	1 cut(s)	523
BseLI	CCNNNNNNNGG	3 cut(s)	355, 399, 514
BseMI	GCAATG	1 cut(s)	204
BseMII	CTCAG	4 cut(s)	58, 83, 241, 344
BseNI	ACTGG	2 cut(s)	14, 195
BseYI	CCCAGC	1 cut(s)	481
BshFI	GGCC	3 cut(s)	4, 479, 521
BsiHKAI	GWGCWC	1 cut(s)	471
BsiHKCI	CYCGRG	1 cut(s)	60
BslFI	GGGAC	2 cut(s)	94, 367
BslI	CCNNNNNNNGG	3 cut(s)	355, 399, 514
BsmAI	GTCTC	2 cut(s)	70, 369
BsmFI	GGGAC	2 cut(s)	94, 367
BsnI	GGCC	3 cut(s)	4, 479, 521
BsoBI	CYCGRG	1 cut(s)	60
Bsp1286I	GDGCHC	1 cut(s)	471
BspACI	CCGC	1 cut(s)	212
BspANI	GGCC	3 cut(s)	4, 479, 521
BspCNI	CTCAG	4 cut(s)	57, 82, 240, 345
BspLI	GGNNCC	2 cut(s)	110, 480
BsrDI	GCAATG	1 cut(s)	204
BsrI	ACTGG	2 cut(s)	14, 195
Bst2UI	CCWGG	1 cut(s)	523
Bst4CI	ACNGT	4 cut(s)	24, 187, 274, 419
Bst6I	CTCTTC	1 cut(s)	372
BstAPI	GCANNNNNTGC	1 cut(s)	432
BstDEI	CTNAG	5 cut(s)	44, 69, 227, 353, 463
BstMAI	GTCTC	2 cut(s)	70, 369
BstMWI	GCNNNNNNNGC	2 cut(s)	432, 510
BstNI	CCWGG	1 cut(s)	523
BstPAI	GACNNNNGTC	1 cut(s)	62
BstSCI	CCNGG	1 cut(s)	521
BstSFI	CTRYAG	1 cut(s)	486
Bsu36I	CCTNAGG	1 cut(s)	353
BsuI	GTATCC	1 cut(s)	225
BsuRI	GGCC	3 cut(s)	4, 479, 521
BtsI	GCAGTG	1 cut(s)	313
BtsIMutI	CAGTG	2 cut(s)	279, 313
CaiI	CAGNNNCTG	2 cut(s)	28, 394
Cfr13I	GGNCC	2 cut(s)	108, 478
Csp6I	GTAC	1 cut(s)	188
CviAII	CATG	1 cut(s)	544
CviJI	RGCY	7 cut(s)	4, 255, 280, 391, 479, 485, 521
CviKI_1	RGCY	7 cut(s)	4, 255, 280, 391, 479, 485, 521
CviQI	GTAC	1 cut(s)	188
DdeI	CTNAG	5 cut(s)	44, 69, 227, 353, 463
DraIII	CACNNNGTG	1 cut(s)	328
EaeI	YGGCCR	1 cut(s)	2
Eam1104I	CTCTTC	1 cut(s)	372
EarI	CTCTTC	1 cut(s)	372
Eco47I	GGWCC	1 cut(s)	108
Eco57I	CTGAAG	2 cut(s)	353, 371
Eco81I	CCTNAGG	1 cut(s)	353
Eco88I	CYCGRG	1 cut(s)	60
EcoO109I	RGGNCCY	1 cut(s)	108
EcoRII	CCWGG	1 cut(s)	521
FaeI	CATG	1 cut(s)	547
FaiI	YATR	5 cut(s)	101, 458, 488, 529, 545
FaqI	GGGAC	2 cut(s)	94, 367
FatI	CATG	1 cut(s)	543
FspBI	CTAG	2 cut(s)	263, 514
GsaI	CCCAGC	1 cut(s)	485
GsuI	CTGGAG	2 cut(s)	31, 428
HaeIII	GGCC	3 cut(s)	4, 479, 521
Hin1II	CATG	1 cut(s)	547
HincII	GTYRAC	2 cut(s)	174, 183
HindII	GTYRAC	2 cut(s)	174, 183
HinfI	GANTC	7 cut(s)	58, 63, 115, 220, 309, 397, 403
HpaI	GTTAAC	1 cut(s)	183
HphI	GGTGA	1 cut(s)	314
Hpy166II	GTNNAC	3 cut(s)	174, 183, 415
Hpy188I	TCNGA	4 cut(s)	72, 306, 372, 402
Hpy188III	TCNNGA	3 cut(s)	229, 334, 445
Hpy8I	GTNNAC	3 cut(s)	174, 183, 415
HpyAV	CCTTC	5 cut(s)	47, 266, 329, 395, 532
HpyCH4III	ACNGT	4 cut(s)	24, 187, 274, 419
HpyCH4V	TGCA	2 cut(s)	345, 435
HpyF10VI	GCNNNNNNNGC	2 cut(s)	432, 510
HpyF3I	CTNAG	5 cut(s)	44, 69, 227, 353, 463
Hsp92II	CATG	1 cut(s)	547
KspAI	GTTAAC	1 cut(s)	183
LweI	GCATC	1 cut(s)	500
MaeI	CTAG	2 cut(s)	263, 514
MaeIII	GTNAC	1 cut(s)	84
MboII	GAAGA	3 cut(s)	32, 215, 359
MhlI	GDGCHC	1 cut(s)	471
MlsI	TGGCCA	1 cut(s)	4
MluCI	AATT	1 cut(s)	150
MluNI	TGGCCA	1 cut(s)	4
MlyI	GAGTC	4 cut(s)	52, 72, 391, 397
MnlI	CCTC	5 cut(s)	6, 291, 348, 452, 511
Mox20I	TGGCCA	1 cut(s)	4
MscI	TGGCCA	1 cut(s)	4
MseI	TTAA	4 cut(s)	32, 121, 149, 182
Msp20I	TGGCCA	1 cut(s)	4
MspR9I	CCNGG	1 cut(s)	523
MvaI	CCWGG	1 cut(s)	523
MwoI	GCNNNNNNNGC	2 cut(s)	432, 510
NlaIII	CATG	1 cut(s)	547
NlaIV	GGNNCC	2 cut(s)	110, 480
PaeR7I	CTCGAG	1 cut(s)	60
PfeI	GAWTC	3 cut(s)	115, 220, 309
PleI	GAGTC	4 cut(s)	52, 71, 391, 397
PpsI	GAGTC	4 cut(s)	52, 71, 391, 397
PpuMI	RGGWCCY	1 cut(s)	108
PshAI	GACNNNNGTC	1 cut(s)	62
PshBI	ATTAAT	1 cut(s)	149
Psp5II	RGGWCCY	1 cut(s)	108
Psp6I	CCWGG	1 cut(s)	521
PspFI	CCCAGC	1 cut(s)	481
PspGI	CCWGG	1 cut(s)	521
PspN4I	GGNNCC	2 cut(s)	110, 480
PspPI	GGNCC	2 cut(s)	108, 478
PspPPI	RGGWCCY	1 cut(s)	108
PspXI	VCTCGAGB	1 cut(s)	60
PstNI	CAGNNNCTG	2 cut(s)	28, 394
RsaI	GTAC	1 cut(s)	189
RsaNI	GTAC	1 cut(s)	188
SaqAI	TTAA	4 cut(s)	32, 121, 149, 182
Sau96I	GGNCC	2 cut(s)	108, 478
SchI	GAGTC	4 cut(s)	52, 72, 391, 397
ScrFI	CCNGG	1 cut(s)	523
SduI	GDGCHC	1 cut(s)	471
SetI	ASST	8 cut(s)	17, 39, 57, 110, 354, 464, 487, 527
SfaNI	GCATC	1 cut(s)	500
SfcI	CTRYAG	1 cut(s)	486
Sfr274I	CTCGAG	1 cut(s)	60
SinI	GGWCC	1 cut(s)	108
SlaI	CTCGAG	1 cut(s)	60
SmlI	CTYRAG	1 cut(s)	60
SmoI	CTYRAG	1 cut(s)	60
Sse9I	AATT	1 cut(s)	150
SsiI	CCGC	1 cut(s)	212
SspMI	CTAG	2 cut(s)	263, 514
StyD4I	CCNGG	1 cut(s)	521
TaaI	ACNGT	4 cut(s)	24, 187, 274, 419
TaqI	TCGA	1 cut(s)	61
TasI	AATT	1 cut(s)	150
TfiI	GAWTC	3 cut(s)	115, 220, 309
Tru1I	TTAA	4 cut(s)	32, 121, 149, 182
Tru9I	TTAA	4 cut(s)	32, 121, 149, 182
TscAI	CASTG	2 cut(s)	279, 320
TspDTI	ATGAA	1 cut(s)	254
TspRI	CASTG	2 cut(s)	279, 320
VpaK11BI	GGWCC	1 cut(s)	108
VspI	ATTAAT	1 cut(s)	149
XhoI	CTCGAG	1 cut(s)	60
XspI	CTAG	2 cut(s)	263, 514

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.