Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0010551

Physical Location & Seq

Genomic Coordinates Forward (+)

7637633 .. 7643436

Gene Structure 5804 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00005640.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2244 bp

ATGAGCGGCGGTGGGGAGACTAGGGTTTCAATCCCAGACAATGTACACAGCACGATCCAAAACATCAGAGAGATCACTAAGAAGCTTCACAGCGACGATGAAATCTATGCTGTGCTCAAGGAGTGCTCTATGGATCCCAACGAGACCGCCCAGAAGCTCTTGTATTTAGATACATTTCATGAGGTCAAAAAGAGACGTGATCGGAGAAAGGAGAACCTGAAAGGCAGGGCATCTGAAGATTCGAGGACAGCACCAGGTGCGCACAGGCGAATGGTCAGGGGTGGTGGCCAAGGGAATTATTCTTCTGATGCTGGTGGTGGGAGGAATTCTTCTGCTCGGAGGGAAAATGGAGCCAGTCATGTTGCAGATGGAGGTTCTCTGTCCTCTTTTATGCCAGTTCAGCAGAAAACTAAGAACAATGCTGCAGCTCCAATCGCAAAAGCTTCAATTGGCATTCCAAACGGGATTAAAAGCCTGTCAAATGGGACTTCTAGTCATGTTTCTGCCCCAAAATCCTCTGCTGGTGTAGATGCAAACAAGTTGGGAGCTACAGCACCTCGTTATGCTGTCGTTGTGGCATCTACACCTGTTGTTGGCTTAAAGGATCAACACAAGGCCCCAACAACTACATCTGATCATCTTCCAAATTCTGCCACTTCTGCATCTGATTCTGGTGTTTACTCATCTGCTTCAGATCCTTCCTTATCAACTCATATACCAGAAAACAAAGATGTTTCGGGTGAATCTGTTGTCATAGAGTTGTCAAAGAGTGAAAATGTTGCCTCAAAATCTGATAATCACGTGATCAAAGAAAAGACTCAAAGTGACAATGCTAAGGCAATTGGAAAGAATCGGCATGCTAAGTCGTCAGAACCCCCTTCCTCAACTCATGATGGTTCTCAGGCCATTCTGCCTTCTAATTCTGATGGAGAATCACAGATAGAGTCGACTGATGCTTTGAAAGTGGCCAAAATGGAGGTTGAAACCGTTGCTGTTAAACCTTCTTCTCAGTTGCCACCTGACTCGAGTCTCTCAGATACCAAACTCGTTACTTTTCCAAATCATATCAAGGTCCCTGAATCTTTAAGAAATGTTTTGACTTTTGGAAGTATTAATTCTACTTTTGGAACGAGTGTTGACTGCGTTAACGGTACTGGTAGCAATGGTTCTACGGGCGGTGTAGAATCTTCTCAGGATACTGATGAAACTGCTAAAGAGCCTTCTCCTAGCAAAAACAGTGTAGCCTCATCTGTTCAAGGAGATTTTTCAGAGAATCCACTGCCTTCACCAAATGTTCTTGAAAAGTTACAACCACCTGAGGGTAATGTCTCTTCAGAGAGTAATGTCCCTTCAGCCCCTGACTCAGAGACCAAAAGTGAACTGTTGAAGCAGGATTTGCAGTTGCCTCCAGAAGTTCCACATAACCTCACTGCTCTAAATGGCCCCAGCTATAGTCTTGGTTTTTTGCCACCGATGCTAGGAGGCCAGGTTTTACAAGTGGAAGGACATGATAATCAGGCACCTGAAGCACCTCGGGGTGGAAATTCTGTTGGTGTTCCCAGCCCAAATACAACCCCACCCCTGCCAAGCTCCATAGCTGCTTCTCCACAGATTCCTGTTTTCAGGCATGCATATCCCGCTAATTATTTCCCATATGGCTATCTCCCGCCGTATTATCTGCCACCAATGCACCAGTTTTTAAGCCCCAATGGCTTTCCTCCACAGCCTTCAGCATATCTACCACCAACAGCACCAGCTGCTGCTGGGATTAAATATCCTCCTCCGCAGTTCAAGGCAGGGAGCAATGCTGGAAATCCACCCCAGTATAACATTCAATCCGGTGGTTCATTCATAACCACCCCTGCTGGTTATGCTCCTGGTTCAGCAGTTACATCTGGAAGCTCAGTTGGTAACACTGAAGATCTTGGAGCATCTCAATCGAAAGAAAGTCATATCTACACTACAGGACAGCTGACTGAGGGTTCAACTGTTTGGATTCATACTCCTGGACAAGATATCAGTTCTCTGTACAACCTTCCTCAGGGGCAACGCTTCGCGTTCTCGCCTGTCCATGCTGGTCATGGTGCCATGACTGGACTTTATCCACCAGGGCAAACGATGGCTTCTCCAACATATCTGCAACAGTCCCAGGCTGCGGCTGGAGCTGCTGAGACCATAGGACCCCCACCTGCTGCTTATCAGCAGCCTCAACATGCACAGATGAATTGGAACAGTAGTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0008150 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043388 GO:0044093 GO:0044424 GO:0044464 GO:0051082 GO:0051098 GO:0051099 GO:0051101 GO:0065007 GO:0065009

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1296

Protein Analysis

747

Amino Acids

78.12

Weight (kDa)

6.13

Isoelectric Point (pI)

58.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GIP1_N	PF06972	11 - 71	1.9e-30	GBF-interacting protein 1 N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010551)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g42501
malus_domestica	MD03G1031400.v1.1 MD11G1035700.v1.1
prunus_persica	Prupe.6G026700_v2.0.a1 Prupe.6G026700_v2.0.a1
pyrus_communis	pycom03g02550 pycom11g02960
rosa_chinensis	RchiOBHm_Chr5g0076171 RchiOBHm_Chr5g0076181
rosa_laevigata	RLG00000036607
rosa_multiflora	Rmu_co8110220.1_g000001 Rmu_sc0003601.1_g000003 Rmu_sc0037654.1_g000001 Rmu_ssc0000123.1_g000003
rosa_roxburghii	Rroxscaffold_1G00005640
rosa_rugosa	Rorug05G0445300
rosa_samantha	Rh5AG501400 Rh5BG522900 Rh5CG546700 Rh5DG535300
rosa_wichuraiana	Rw5G046540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	2197
Acc16I	TGCGCA	1 cut(s)	261
Acc36I	ACCTGC	1 cut(s)	2197
AccB1I	GGYRCC	2 cut(s)	1519, 2084
AccBSI	CCGCTC	1 cut(s)	6
AccI	GTMKAC	1 cut(s)	947
AccII	CGCG	1 cut(s)	2057
AciI	CCGC	8 cut(s)	6, 9, 147, 1176, 1638, 1667, 1784, 2156
AclWI	GGATC	5 cut(s)	49, 128, 141, 612, 689
AcoI	YGGCCR	2 cut(s)	286, 966
AcsI	RAATTY	3 cut(s)	325, 646, 1543
AcuI	CTGAAG	7 cut(s)	255, 675, 1317, 1335, 1545, 1713, 1938
AcvI	CACGTG	1 cut(s)	802
AdeI	CACNNNGTG	1 cut(s)	257
AfaI	GTAC	3 cut(s)	45, 1153, 2030
AfiI	CCNNNNNNNGG	6 cut(s)	593, 1319, 1478, 1538, 2041, 2155
AhdI	GACNNNNNGTC	1 cut(s)	492
AjiI	CACGTC	1 cut(s)	197
AjnI	CCWGG	6 cut(s)	253, 1485, 1876, 2005, 2107, 2148
Alw21I	GWGCWC	2 cut(s)	117, 128
Alw26I	GTCTC	7 cut(s)	11, 137, 187, 1034, 1333, 1361, 2165
AlwI	GGATC	5 cut(s)	49, 128, 141, 612, 689
AlwNI	CAGNNNCTG	2 cut(s)	1358, 1760
Ama87I	CYCGRG	2 cut(s)	1024, 1533
AoxI	GGCC	6 cut(s)	286, 615, 903, 966, 1441, 1483
ApeKI	GCWGC	9 cut(s)	422, 425, 1598, 1757, 1760, 2153, 2165, 2192, 2203
ApoI	RAATTY	3 cut(s)	325, 646, 1543
ArsI	GACNNNNNNTTYG	2 cut(s)	940, 972
AseI	ATTAAT	1 cut(s)	1113
AspLEI	GCGC	1 cut(s)	262
AspS9I	GGNCC	4 cut(s)	616, 1072, 1442, 2180
AsuHPI	GGTGA	2 cut(s)	752, 1278
AvaI	CYCGRG	2 cut(s)	1024, 1533
AvaII	GGWCC	2 cut(s)	1072, 2180
AxyI	CCTNAGG	2 cut(s)	1317, 2040
BalI	TGGCCA	2 cut(s)	288, 968
BamHI	GGATCC	1 cut(s)	133
BanI	GGYRCC	2 cut(s)	1519, 2084
BarI	GAAGNNNNNNTAC	4 cut(s)	1315, 1333, 1347, 1365
BbrPI	CACGTG	1 cut(s)	802
Bbv12I	GWGCWC	2 cut(s)	117, 128
BbvI	GCAGC	9 cut(s)	409, 437, 1585, 1744, 1747, 2140, 2152, 2179, 2215
BccI	CCATC	4 cut(s)	362, 887, 920, 2113
BceAI	ACGGC	1 cut(s)	1654
BcgI	CGANNNNNNTGC	2 cut(s)	1920, 1954
BciT130I	CCWGG	6 cut(s)	255, 1487, 1878, 2007, 2109, 2150
BciVI	GTATCC	1 cut(s)	1189
BclI	TGATCA	2 cut(s)	634, 804
BcoDI	GTCTC	7 cut(s)	11, 137, 187, 1034, 1333, 1361, 2165
BfaI	CTAG	4 cut(s)	21, 492, 1227, 1478
BfmI	CTRYAG	4 cut(s)	423, 549, 1450, 1962
BfuAI	ACCTGC	1 cut(s)	2197
BfuI	GTATCC	1 cut(s)	1189
BglI	GCCNNNNNGGC	1 cut(s)	1710
BglII	AGATCT	1 cut(s)	1921
Bme1390I	CCNGG	6 cut(s)	255, 1487, 1878, 2007, 2109, 2150
Bme18I	GGWCC	2 cut(s)	1072, 2180
BmeRI	GACNNNNNGTC	1 cut(s)	492
BmeT110I	CYCGRG	2 cut(s)	1024, 1533
BmgBI	CACGTC	1 cut(s)	197
BmgT120I	GGNCC	4 cut(s)	616, 1072, 1442, 2180
BmiI	GGNNCC	8 cut(s)	135, 352, 618, 1074, 1444, 1521, 2086, 2182
BmrFI	CCNGG	6 cut(s)	255, 1487, 1878, 2007, 2109, 2150
BmrI	ACTGGG	1 cut(s)	1816
BmsI	GCATC	8 cut(s)	239, 298, 520, 587, 671, 943, 1464, 1940
BmuI	ACTGGG	1 cut(s)	1816
BoxI	GACNNNNGTC	1 cut(s)	1026
BpmI	CTGGAG	2 cut(s)	1392, 2181
Bpu10I	CCTNAGC	1 cut(s)	834
BpuEI	CTTGAG	1 cut(s)	101
BsaAI	YACGTR	1 cut(s)	802
BsaI	GGTCTC	3 cut(s)	137, 1361, 2165
BsaJI	CCNNGG	4 cut(s)	289, 1532, 2108, 2148
BsaWI	WCCGGW	1 cut(s)	1838
BsaXI	ACNNNNNCTCC	2 cut(s)	1473, 1503
Bsc4I	CCNNNNNNNGG	6 cut(s)	593, 1319, 1478, 1538, 2041, 2155
Bse1I	ACTGG	6 cut(s)	354, 395, 1159, 1693, 1822, 2098
Bse21I	CCTNAGG	2 cut(s)	1317, 2040
Bse3DI	GCAATG	2 cut(s)	1168, 1810
BseBI	CCWGG	6 cut(s)	255, 1487, 1878, 2007, 2109, 2150
BseDI	CCNNGG	4 cut(s)	289, 1532, 2108, 2148
BseLI	CCNNNNNNNGG	6 cut(s)	593, 1319, 1478, 1538, 2041, 2155
BseMI	GCAATG	2 cut(s)	1168, 1810
BseNI	ACTGG	6 cut(s)	354, 395, 1159, 1693, 1822, 2098
BseRI	GAGGAG	1 cut(s)	1770
BseXI	GCAGC	9 cut(s)	409, 437, 1585, 1744, 1747, 2140, 2152, 2179, 2215
BseYI	CCCAGC	3 cut(s)	1445, 1559, 1763
Bsh1236I	CGCG	1 cut(s)	2057
BshFI	GGCC	6 cut(s)	288, 617, 905, 968, 1443, 1485
BshNI	GGYRCC	2 cut(s)	1519, 2084
BsiHKAI	GWGCWC	2 cut(s)	117, 128
BsiHKCI	CYCGRG	2 cut(s)	1024, 1533
BsiSI	CCGG	1 cut(s)	1839
BslFI	GGGAC	4 cut(s)	499, 1058, 1331, 2131
BslI	CCNNNNNNNGG	6 cut(s)	593, 1319, 1478, 1538, 2041, 2155
BsmAI	GTCTC	7 cut(s)	11, 137, 187, 1034, 1333, 1361, 2165
BsmBI	CGTCTC	1 cut(s)	187
BsmFI	GGGAC	4 cut(s)	499, 1058, 1331, 2131
BsmI	GAATGC	1 cut(s)	453
BsnI	GGCC	6 cut(s)	288, 617, 905, 968, 1443, 1485
Bso31I	GGTCTC	3 cut(s)	137, 1361, 2165
BsoBI	CYCGRG	2 cut(s)	1024, 1533
Bsp1286I	GDGCHC	2 cut(s)	117, 128
Bsp1407I	TGTACA	2 cut(s)	43, 2028
Bsp143I	GATC	9 cut(s)	54, 72, 133, 199, 604, 634, 694, 804, 1921
BspACI	CCGC	8 cut(s)	6, 9, 147, 1176, 1638, 1667, 1784, 2156
BspANI	GGCC	6 cut(s)	288, 617, 905, 968, 1443, 1485
BspFNI	CGCG	1 cut(s)	2057
BspHI	TCATGA	2 cut(s)	178, 889
BspLI	GGNNCC	8 cut(s)	135, 352, 618, 1074, 1444, 1521, 2086, 2182
BspMAI	CTGCAG	1 cut(s)	427
BspMI	ACCTGC	1 cut(s)	2197
BspPI	GGATC	5 cut(s)	49, 128, 141, 612, 689
BspT107I	GGYRCC	2 cut(s)	1519, 2084
BspTNI	GGTCTC	3 cut(s)	137, 1361, 2165
BsrBI	CCGCTC	1 cut(s)	6
BsrDI	GCAATG	2 cut(s)	1168, 1810
BsrGI	TGTACA	2 cut(s)	43, 2028
BsrI	ACTGG	6 cut(s)	354, 395, 1159, 1693, 1822, 2098
BssECI	CCNNGG	4 cut(s)	289, 1532, 2108, 2148
BssMI	GATC	9 cut(s)	54, 72, 133, 199, 604, 634, 694, 804, 1921
BssT1I	CCWWGG	1 cut(s)	289
Bst2UI	CCWGG	6 cut(s)	255, 1487, 1878, 2007, 2109, 2150
Bst4CI	ACNGT	7 cut(s)	988, 1151, 1238, 1383, 1990, 2145, 2234
Bst6I	CTCTTC	1 cut(s)	1336
BstAPI	GCANNNNNTGC	3 cut(s)	257, 1396, 1757
BstAUI	TGTACA	2 cut(s)	43, 2028
BstBAI	YACGTR	1 cut(s)	802
BstC8I	GCNNGC	2 cut(s)	858, 1629
BstENI	CCTNNNNNAGG	1 cut(s)	2039
BstFNI	CGCG	1 cut(s)	2057
BstHHI	GCGC	1 cut(s)	262
BstKTI	GATC	9 cut(s)	57, 75, 136, 202, 607, 637, 697, 807, 1924
BstMAI	GTCTC	7 cut(s)	11, 137, 187, 1034, 1333, 1361, 2165
BstMBI	GATC	9 cut(s)	54, 72, 133, 199, 604, 634, 694, 804, 1921
BstNI	CCWGG	6 cut(s)	255, 1487, 1878, 2007, 2109, 2150
BstNSI	RCATGY	3 cut(s)	860, 1631, 2216
BstPAI	GACNNNNGTC	1 cut(s)	1026
BstSCI	CCNGG	6 cut(s)	253, 1485, 1876, 2005, 2107, 2148
BstSFI	CTRYAG	4 cut(s)	423, 549, 1450, 1962
BstUI	CGCG	1 cut(s)	2057
BstV1I	GCAGC	9 cut(s)	409, 437, 1585, 1744, 1747, 2140, 2152, 2179, 2215
BstX2I	RGATCY	3 cut(s)	133, 694, 1921
BstYI	RGATCY	3 cut(s)	133, 694, 1921
Bsu36I	CCTNAGG	2 cut(s)	1317, 2040
BsuI	GTATCC	1 cut(s)	1189
BsuRI	GGCC	6 cut(s)	288, 617, 905, 968, 1443, 1485
BtrI	CACGTC	1 cut(s)	197
BtsI	GCAGTG	2 cut(s)	1277, 1428
BtsIMutI	CAGTG	4 cut(s)	1243, 1277, 1428, 1914
BveI	ACCTGC	1 cut(s)	2197
Cac8I	GCNNGC	2 cut(s)	858, 1629
CaiI	CAGNNNCTG	2 cut(s)	1358, 1760
CciI	TCATGA	2 cut(s)	178, 889
CfoI	GCGC	1 cut(s)	262
Cfr13I	GGNCC	4 cut(s)	616, 1072, 1442, 2180
CsiI	ACCWGGT	1 cut(s)	253
Csp6I	GTAC	3 cut(s)	44, 1152, 2029
CviQI	GTAC	3 cut(s)	44, 1152, 2029
DpnI	GATC	9 cut(s)	56, 74, 135, 201, 606, 636, 696, 806, 1923
DpnII	GATC	9 cut(s)	54, 72, 133, 199, 604, 634, 694, 804, 1921
DraIII	CACNNNGTG	1 cut(s)	257
DriI	GACNNNNNGTC	1 cut(s)	492
EaeI	YGGCCR	2 cut(s)	286, 966
Eam1104I	CTCTTC	1 cut(s)	1336
Eam1105I	GACNNNNNGTC	1 cut(s)	492
EarI	CTCTTC	1 cut(s)	1336
Eco130I	CCWWGG	1 cut(s)	289
Eco31I	GGTCTC	3 cut(s)	137, 1361, 2165
Eco32I	GATATC	1 cut(s)	2017
Eco47I	GGWCC	2 cut(s)	1072, 2180
Eco57I	CTGAAG	7 cut(s)	255, 675, 1317, 1335, 1545, 1713, 1938
Eco72I	CACGTG	1 cut(s)	802
Eco81I	CCTNAGG	2 cut(s)	1317, 2040
Eco88I	CYCGRG	2 cut(s)	1024, 1533
EcoNI	CCTNNNNNAGG	1 cut(s)	2039
EcoO109I	RGGNCCY	3 cut(s)	616, 1072, 2180
EcoRI	GAATTC	1 cut(s)	325
EcoRII	CCWGG	6 cut(s)	253, 1485, 1876, 2005, 2107, 2148
EcoRV	GATATC	1 cut(s)	2017
EcoT14I	CCWWGG	1 cut(s)	289
EcoT22I	ATGCAT	1 cut(s)	1633
ErhI	CCWWGG	1 cut(s)	289
Esp3I	CGTCTC	1 cut(s)	187
FaqI	GGGAC	4 cut(s)	499, 1058, 1331, 2131
FauI	CCCGC	2 cut(s)	1645, 1674
FauNDI	CATATG	1 cut(s)	1654
FbaI	TGATCA	2 cut(s)	634, 804
FblI	GTMKAC	1 cut(s)	947
FspAI	RTGCGCAY	1 cut(s)	261
FspBI	CTAG	4 cut(s)	21, 492, 1227, 1478
FspI	TGCGCA	1 cut(s)	261
GlaI	GCGC	1 cut(s)	261
GsaI	CCCAGC	3 cut(s)	1449, 1563, 1767
GsuI	CTGGAG	2 cut(s)	1392, 2181
HaeIII	GGCC	6 cut(s)	288, 617, 905, 968, 1443, 1485
HapII	CCGG	1 cut(s)	1839
HhaI	GCGC	1 cut(s)	262
Hin6I	GCGC	1 cut(s)	260
HinP1I	GCGC	1 cut(s)	260
HincII	GTYRAC	3 cut(s)	948, 1138, 1147
HindII	GTYRAC	3 cut(s)	948, 1138, 1147
HindIII	AAGCTT	2 cut(s)	83, 441
HpaI	GTTAAC	1 cut(s)	1147
HpaII	CCGG	1 cut(s)	1839
HphI	GGTGA	2 cut(s)	752, 1278
Hpy166II	GTNNAC	6 cut(s)	46, 679, 948, 1138, 1147, 1379
Hpy188III	TCNNGA	6 cut(s)	179, 890, 1193, 1298, 1409, 1896
Hpy8I	GTNNAC	6 cut(s)	46, 679, 948, 1138, 1147, 1379
Hpy99I	CGWCG	1 cut(s)	98
HpyCH4III	ACNGT	7 cut(s)	988, 1151, 1238, 1383, 1990, 2145, 2234
HpyCH4IV	ACGT	2 cut(s)	196, 801
HpyCH4V	TGCA	9 cut(s)	365, 425, 533, 662, 1399, 1631, 1690, 2140, 2216
HpySE526I	ACGT	2 cut(s)	196, 801
HspAI	GCGC	1 cut(s)	260
Ksp22I	TGATCA	2 cut(s)	634, 804
KspAI	GTTAAC	1 cut(s)	1147
Kzo9I	GATC	9 cut(s)	54, 72, 133, 199, 604, 634, 694, 804, 1921
LmnI	GCTCC	8 cut(s)	350, 433, 545, 1595, 1800, 1879, 1928, 2162
Lsp1109I	GCAGC	9 cut(s)	409, 437, 1585, 1744, 1747, 2140, 2152, 2179, 2215
LweI	GCATC	8 cut(s)	239, 298, 520, 587, 671, 943, 1464, 1940
MabI	ACCWGGT	1 cut(s)	253
MaeI	CTAG	4 cut(s)	21, 492, 1227, 1478
MaeII	ACGT	2 cut(s)	196, 801
MaeIII	GTNAC	5 cut(s)	824, 1048, 1305, 1888, 1910
MalI	GATC	9 cut(s)	56, 74, 135, 201, 606, 636, 696, 806, 1923
MbiI	CCGCTC	1 cut(s)	6
MboI	GATC	9 cut(s)	54, 72, 133, 199, 604, 634, 694, 804, 1921
MboII	GAAGA	8 cut(s)	248, 294, 321, 632, 996, 1179, 1323, 1931
MfeI	CAATTG	2 cut(s)	447, 840
MflI	RGATCY	3 cut(s)	133, 694, 1921
MhlI	GDGCHC	2 cut(s)	117, 128
MlsI	TGGCCA	2 cut(s)	288, 968
MluNI	TGGCCA	2 cut(s)	288, 968
MlyI	GAGTC	5 cut(s)	811, 953, 1016, 1036, 1355
MmeI	TCCRAC	1 cut(s)	2153
Mox20I	TGGCCA	2 cut(s)	288, 968
Mph1103I	ATGCAT	1 cut(s)	1633
MscI	TGGCCA	2 cut(s)	288, 968
MseI	TTAA	8 cut(s)	468, 599, 996, 1085, 1113, 1146, 1700, 1770
Msp20I	TGGCCA	2 cut(s)	288, 968
MspA1I	CMGCKG	2 cut(s)	1757, 1972
MspI	CCGG	1 cut(s)	1839
MspR9I	CCNGG	6 cut(s)	255, 1487, 1878, 2007, 2109, 2150
MunI	CAATTG	2 cut(s)	447, 840
Mva1269I	GAATGC	1 cut(s)	453
MvaI	CCWGG	6 cut(s)	255, 1487, 1878, 2007, 2109, 2150
MvnI	CGCG	1 cut(s)	2057
NdeI	CATATG	1 cut(s)	1654
NdeII	GATC	9 cut(s)	54, 72, 133, 199, 604, 634, 694, 804, 1921
NlaIV	GGNNCC	8 cut(s)	135, 352, 618, 1074, 1444, 1521, 2086, 2182
NmuCI	GTSAC	1 cut(s)	824
NsbI	TGCGCA	1 cut(s)	261
NsiI	ATGCAT	1 cut(s)	1633
NspI	RCATGY	3 cut(s)	860, 1631, 2216
PaeI	GCATGC	2 cut(s)	860, 1631
PaeR7I	CTCGAG	1 cut(s)	1024
PagI	TCATGA	2 cut(s)	178, 889
PaqCI	CACCTGC	1 cut(s)	2197
PctI	GAATGC	1 cut(s)	453
PfoI	TCCNGGA	1 cut(s)	2005
PleI	GAGTC	5 cut(s)	811, 952, 1016, 1035, 1355
PmaCI	CACGTG	1 cut(s)	802
PmlI	CACGTG	1 cut(s)	802
PpsI	GAGTC	5 cut(s)	811, 952, 1016, 1035, 1355
Ppu21I	YACGTR	1 cut(s)	802
PpuMI	RGGWCCY	2 cut(s)	1072, 2180
PshAI	GACNNNNGTC	1 cut(s)	1026
PshBI	ATTAAT	1 cut(s)	1113
Psp5II	RGGWCCY	2 cut(s)	1072, 2180
Psp6I	CCWGG	6 cut(s)	253, 1485, 1876, 2005, 2107, 2148
PspCI	CACGTG	1 cut(s)	802
PspFI	CCCAGC	3 cut(s)	1445, 1559, 1763
PspGI	CCWGG	6 cut(s)	253, 1485, 1876, 2005, 2107, 2148
PspN4I	GGNNCC	8 cut(s)	135, 352, 618, 1074, 1444, 1521, 2086, 2182
PspPI	GGNCC	4 cut(s)	616, 1072, 1442, 2180
PspPPI	RGGWCCY	2 cut(s)	1072, 2180
PspXI	VCTCGAGB	1 cut(s)	1024
PsrI	GAACNNNNNNTAC	2 cut(s)	1150, 1182
PstI	CTGCAG	1 cut(s)	427
PstNI	CAGNNNCTG	2 cut(s)	1358, 1760
PsuI	RGATCY	3 cut(s)	133, 694, 1921
PvuII	CAGCTG	2 cut(s)	1757, 1972
RsaI	GTAC	3 cut(s)	45, 1153, 2030
RsaNI	GTAC	3 cut(s)	44, 1152, 2029
SalI	GTCGAC	1 cut(s)	946
SaqAI	TTAA	8 cut(s)	468, 599, 996, 1085, 1113, 1146, 1700, 1770
Sau3AI	GATC	9 cut(s)	54, 72, 133, 199, 604, 634, 694, 804, 1921
Sau96I	GGNCC	4 cut(s)	616, 1072, 1442, 2180
SchI	GAGTC	5 cut(s)	811, 953, 1016, 1036, 1355
ScrFI	CCNGG	6 cut(s)	255, 1487, 1878, 2007, 2109, 2150
SduI	GDGCHC	2 cut(s)	117, 128
SexAI	ACCWGGT	1 cut(s)	253
SfaNI	GCATC	8 cut(s)	239, 298, 520, 587, 671, 943, 1464, 1940
SfcI	CTRYAG	4 cut(s)	423, 549, 1450, 1962
Sfr274I	CTCGAG	1 cut(s)	1024
SinI	GGWCC	2 cut(s)	1072, 2180
SlaI	CTCGAG	1 cut(s)	1024
SmlI	CTYRAG	2 cut(s)	116, 1024
SmoI	CTYRAG	2 cut(s)	116, 1024
SphI	GCATGC	2 cut(s)	860, 1631
SsiI	CCGC	8 cut(s)	6, 9, 147, 1176, 1638, 1667, 1784, 2156
SspMI	CTAG	4 cut(s)	21, 492, 1227, 1478
StyD4I	CCNGG	6 cut(s)	253, 1485, 1876, 2005, 2107, 2148
StyI	CCWWGG	1 cut(s)	289
TaaI	ACNGT	7 cut(s)	988, 1151, 1238, 1383, 1990, 2145, 2234
TaiI	ACGT	2 cut(s)	199, 804
TaqI	TCGA	4 cut(s)	242, 947, 1025, 1940
TatI	WGTACW	2 cut(s)	43, 2028
TauI	GCSGC	2 cut(s)	9, 2159
Tru1I	TTAA	8 cut(s)	468, 599, 996, 1085, 1113, 1146, 1700, 1770
Tru9I	TTAA	8 cut(s)	468, 599, 996, 1085, 1113, 1146, 1700, 1770
TscAI	CASTG	4 cut(s)	1243, 1284, 1435, 1921
TseFI	GTSAC	1 cut(s)	824
TseI	GCWGC	9 cut(s)	422, 425, 1598, 1757, 1760, 2153, 2165, 2192, 2203
Tsp45I	GTSAC	1 cut(s)	824
TspDTI	ATGAA	7 cut(s)	114, 167, 1218, 1836, 1840, 1988, 2237
TspRI	CASTG	4 cut(s)	1243, 1284, 1435, 1921
VpaK11BI	GGWCC	2 cut(s)	1072, 2180
VspI	ATTAAT	1 cut(s)	1113
XagI	CCTNNNNNAGG	1 cut(s)	2039
XapI	RAATTY	3 cut(s)	325, 646, 1543
XceI	RCATGY	3 cut(s)	860, 1631, 2216
XcmI	CCANNNNNNNNNTGG	2 cut(s)	2078, 2156
XhoI	CTCGAG	1 cut(s)	1024
XmiI	GTMKAC	1 cut(s)	947
XspI	CTAG	4 cut(s)	21, 492, 1227, 1478
Zsp2I	ATGCAT	1 cut(s)	1633

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.