Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000123.1

Orthogroup ID

OG0010551

Physical Location & Seq

Genomic Coordinates Reverse (-)

7325 .. 8118

Gene Structure 794 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000123.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

atgcaccagtttttaagccccaatggctttcctccacagccttcagcatatctaccaccaacagcaccagctgctgctgggattaaatatcctcctccgcagttcaaggcagggagcaatgctggaaatccaccccagtataacattcaatccggtggttcattcataaccacccctgctggttatgctcctggttcagcagttacatctggaagctcagttggtaacactgaagatcttggagcatctcaatcgaaagaaagtcatatctacactacaggacagctgactgagggttcaactgtttggattcatactcctggacaagatatcagttctctgtacaaccttcctcaggggcaacgcttcgcgttctcgcctgtccatgctggtcatggtgccatgactggactttatccaccagggcaaacgatggcttctccaacatatatgcaacagtcccaggctgcggctggagctgctgagaccataggacccccacctgctgcttatcagcagcctcaacatgcacagatgaattggaacagtagtttttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0008150 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043388 GO:0044093 GO:0044424 GO:0044464 GO:0051082 GO:0051098 GO:0051099 GO:0051101 GO:0065007 GO:0065009

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1296

Protein Analysis

185

Amino Acids

19.18

Weight (kDa)

6.26

Isoelectric Point (pI)

66.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010551)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g42501
malus_domestica	MD03G1031400.v1.1 MD11G1035700.v1.1
prunus_persica	Prupe.6G026700_v2.0.a1 Prupe.6G026700_v2.0.a1
pyrus_communis	pycom03g02550 pycom11g02960
rosa_chinensis	RchiOBHm_Chr5g0076171 RchiOBHm_Chr5g0076181
rosa_laevigata	RLG00000036607
rosa_multiflora	Rmu_co8110220.1_g000001 Rmu_sc0003601.1_g000003 Rmu_sc0037654.1_g000001 Rmu_ssc0000123.1_g000003
rosa_roxburghii	Rroxscaffold_1G00005640
rosa_rugosa	Rorug05G0445300
rosa_samantha	Rh5AG501400 Rh5BG522900 Rh5CG546700 Rh5DG535300
rosa_wichuraiana	Rw5G046540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	511
Acc36I	ACCTGC	1 cut(s)	511
AccB1I	GGYRCC	1 cut(s)	398
AccII	CGCG	1 cut(s)	371
AciI	CCGC	2 cut(s)	98, 470
AcuI	CTGAAG	2 cut(s)	27, 252
AfaI	GTAC	1 cut(s)	344
AfiI	CCNNNNNNNGG	2 cut(s)	355, 469
AgsI	TTSAA	3 cut(s)	106, 149, 300
AjnI	CCWGG	4 cut(s)	190, 319, 421, 462
AluBI	AGCT	4 cut(s)	71, 216, 286, 479
AluI	AGCT	4 cut(s)	71, 216, 286, 479
Alw26I	GTCTC	1 cut(s)	479
AlwNI	CAGNNNCTG	1 cut(s)	74
ApeKI	GCWGC	6 cut(s)	71, 74, 467, 479, 506, 517
AspS9I	GGNCC	1 cut(s)	494
AvaII	GGWCC	1 cut(s)	494
AxyI	CCTNAGG	1 cut(s)	354
BanI	GGYRCC	1 cut(s)	398
BbvI	GCAGC	6 cut(s)	58, 61, 454, 466, 493, 529
BccI	CCATC	1 cut(s)	427
BcgI	CGANNNNNNTGC	2 cut(s)	234, 268
BciT130I	CCWGG	4 cut(s)	192, 321, 423, 464
BcoDI	GTCTC	1 cut(s)	479
BfmI	CTRYAG	1 cut(s)	276
BfuAI	ACCTGC	1 cut(s)	511
BglI	GCCNNNNNGGC	1 cut(s)	24
BglII	AGATCT	1 cut(s)	235
BisI	GCNGC	7 cut(s)	72, 75, 468, 471, 480, 507, 518
BlsI	GCNGC	7 cut(s)	73, 76, 469, 472, 481, 508, 519
Bme1390I	CCNGG	4 cut(s)	192, 321, 423, 464
Bme18I	GGWCC	1 cut(s)	494
BmgT120I	GGNCC	1 cut(s)	494
BmiI	GGNNCC	2 cut(s)	400, 496
BmrFI	CCNGG	4 cut(s)	192, 321, 423, 464
BmrI	ACTGGG	1 cut(s)	130
BmsI	GCATC	1 cut(s)	254
BmuI	ACTGGG	1 cut(s)	130
BpmI	CTGGAG	1 cut(s)	495
BsaI	GGTCTC	1 cut(s)	479
BsaJI	CCNNGG	2 cut(s)	422, 462
BsaWI	WCCGGW	1 cut(s)	152
Bsc4I	CCNNNNNNNGG	2 cut(s)	355, 469
Bse1I	ACTGG	3 cut(s)	7, 136, 412
Bse21I	CCTNAGG	1 cut(s)	354
Bse3DI	GCAATG	1 cut(s)	124
BseBI	CCWGG	4 cut(s)	192, 321, 423, 464
BseDI	CCNNGG	2 cut(s)	422, 462
BseLI	CCNNNNNNNGG	2 cut(s)	355, 469
BseMI	GCAATG	1 cut(s)	124
BseMII	CTCAG	4 cut(s)	231, 282, 368, 474
BseNI	ACTGG	3 cut(s)	7, 136, 412
BseRI	GAGGAG	1 cut(s)	84
BseXI	GCAGC	6 cut(s)	58, 61, 454, 466, 493, 529
BseYI	CCCAGC	1 cut(s)	77
Bsh1236I	CGCG	1 cut(s)	371
BshNI	GGYRCC	1 cut(s)	398
BsiSI	CCGG	1 cut(s)	153
BslFI	GGGAC	1 cut(s)	445
BslI	CCNNNNNNNGG	2 cut(s)	355, 469
BsmAI	GTCTC	1 cut(s)	479
BsmFI	GGGAC	1 cut(s)	445
Bso31I	GGTCTC	1 cut(s)	479
Bsp1407I	TGTACA	1 cut(s)	342
Bsp143I	GATC	1 cut(s)	235
BspACI	CCGC	2 cut(s)	98, 470
BspCNI	CTCAG	4 cut(s)	230, 283, 367, 475
BspFNI	CGCG	1 cut(s)	371
BspLI	GGNNCC	2 cut(s)	400, 496
BspMI	ACCTGC	1 cut(s)	511
BspT107I	GGYRCC	1 cut(s)	398
BspTNI	GGTCTC	1 cut(s)	479
BsrDI	GCAATG	1 cut(s)	124
BsrGI	TGTACA	1 cut(s)	342
BsrI	ACTGG	3 cut(s)	7, 136, 412
BssECI	CCNNGG	2 cut(s)	422, 462
BssMI	GATC	1 cut(s)	235
Bst2UI	CCWGG	4 cut(s)	192, 321, 423, 464
Bst4CI	ACNGT	3 cut(s)	304, 459, 548
BstAPI	GCANNNNNTGC	1 cut(s)	71
BstAUI	TGTACA	1 cut(s)	342
BstDEI	CTNAG	4 cut(s)	217, 291, 354, 483
BstENI	CCTNNNNNAGG	1 cut(s)	353
BstFNI	CGCG	1 cut(s)	371
BstKTI	GATC	1 cut(s)	238
BstMAI	GTCTC	1 cut(s)	479
BstMBI	GATC	1 cut(s)	235
BstMWI	GCNNNNNNNGC	5 cut(s)	24, 71, 185, 476, 479
BstNI	CCWGG	4 cut(s)	192, 321, 423, 464
BstNSI	RCATGY	1 cut(s)	530
BstSCI	CCNGG	4 cut(s)	190, 319, 421, 462
BstSFI	CTRYAG	1 cut(s)	276
BstUI	CGCG	1 cut(s)	371
BstV1I	GCAGC	6 cut(s)	58, 61, 454, 466, 493, 529
BstX2I	RGATCY	1 cut(s)	235
BstYI	RGATCY	1 cut(s)	235
Bsu36I	CCTNAGG	1 cut(s)	354
BtsIMutI	CAGTG	1 cut(s)	228
BveI	ACCTGC	1 cut(s)	511
CaiI	CAGNNNCTG	1 cut(s)	74
Cfr13I	GGNCC	1 cut(s)	494
Csp6I	GTAC	1 cut(s)	343
CviAII	CATG	4 cut(s)	386, 395, 403, 527
CviQI	GTAC	1 cut(s)	343
DdeI	CTNAG	4 cut(s)	217, 291, 354, 483
DpnI	GATC	1 cut(s)	237
DpnII	GATC	1 cut(s)	235
Eco31I	GGTCTC	1 cut(s)	479
Eco32I	GATATC	1 cut(s)	331
Eco47I	GGWCC	1 cut(s)	494
Eco57I	CTGAAG	2 cut(s)	27, 252
Eco81I	CCTNAGG	1 cut(s)	354
EcoNI	CCTNNNNNAGG	1 cut(s)	353
EcoO109I	RGGNCCY	1 cut(s)	494
EcoRII	CCWGG	4 cut(s)	190, 319, 421, 462
EcoRV	GATATC	1 cut(s)	331
FaeI	CATG	4 cut(s)	389, 398, 406, 530
FaqI	GGGAC	1 cut(s)	445
FatI	CATG	4 cut(s)	385, 394, 402, 526
Fnu4HI	GCNGC	7 cut(s)	72, 75, 468, 471, 480, 507, 518
Fsp4HI	GCNGC	7 cut(s)	72, 75, 468, 471, 480, 507, 518
GluI	GCNGC	7 cut(s)	72, 75, 468, 471, 480, 507, 518
GsaI	CCCAGC	1 cut(s)	81
GsuI	CTGGAG	1 cut(s)	495
HapII	CCGG	1 cut(s)	153
Hin1II	CATG	4 cut(s)	389, 398, 406, 530
HinfI	GANTC	1 cut(s)	310
HpaII	CCGG	1 cut(s)	153
Hpy188III	TCNNGA	1 cut(s)	210
HpyAV	CCTTC	2 cut(s)	51, 359
HpyCH4III	ACNGT	3 cut(s)	304, 459, 548
HpyCH4V	TGCA	3 cut(s)	4, 454, 530
HpyF10VI	GCNNNNNNNGC	5 cut(s)	24, 71, 185, 476, 479
HpyF3I	CTNAG	4 cut(s)	217, 291, 354, 483
Hsp92II	CATG	4 cut(s)	389, 398, 406, 530
Kzo9I	GATC	1 cut(s)	235
LmnI	GCTCC	4 cut(s)	114, 193, 242, 476
Lsp1109I	GCAGC	6 cut(s)	58, 61, 454, 466, 493, 529
LweI	GCATC	1 cut(s)	254
MaeIII	GTNAC	2 cut(s)	202, 224
MalI	GATC	1 cut(s)	237
MboI	GATC	1 cut(s)	235
MboII	GAAGA	1 cut(s)	245
MflI	RGATCY	1 cut(s)	235
MluCI	AATT	1 cut(s)	538
MmeI	TCCRAC	1 cut(s)	467
MnlI	CCTC	6 cut(s)	42, 102, 105, 286, 363, 531
MseI	TTAA	2 cut(s)	14, 84
MspA1I	CMGCKG	2 cut(s)	71, 286
MspI	CCGG	1 cut(s)	153
MspR9I	CCNGG	4 cut(s)	192, 321, 423, 464
MvaI	CCWGG	4 cut(s)	192, 321, 423, 464
MvnI	CGCG	1 cut(s)	371
MwoI	GCNNNNNNNGC	5 cut(s)	24, 71, 185, 476, 479
NdeII	GATC	1 cut(s)	235
NlaIII	CATG	4 cut(s)	389, 398, 406, 530
NlaIV	GGNNCC	2 cut(s)	400, 496
NspI	RCATGY	1 cut(s)	530
PaqCI	CACCTGC	1 cut(s)	511
PfeI	GAWTC	1 cut(s)	310
PfoI	TCCNGGA	1 cut(s)	319
PkrI	GCNGC	7 cut(s)	73, 76, 469, 472, 481, 508, 519
PpuMI	RGGWCCY	1 cut(s)	494
Psp5II	RGGWCCY	1 cut(s)	494
Psp6I	CCWGG	4 cut(s)	190, 319, 421, 462
PspFI	CCCAGC	1 cut(s)	77
PspGI	CCWGG	4 cut(s)	190, 319, 421, 462
PspN4I	GGNNCC	2 cut(s)	400, 496
PspPI	GGNCC	1 cut(s)	494
PspPPI	RGGWCCY	1 cut(s)	494
PstNI	CAGNNNCTG	1 cut(s)	74
PsuI	RGATCY	1 cut(s)	235
PvuII	CAGCTG	2 cut(s)	71, 286
RsaI	GTAC	1 cut(s)	344
RsaNI	GTAC	1 cut(s)	343
SaqAI	TTAA	2 cut(s)	14, 84
SatI	GCNGC	7 cut(s)	72, 75, 468, 471, 480, 507, 518
Sau3AI	GATC	1 cut(s)	235
Sau96I	GGNCC	1 cut(s)	494
ScrFI	CCNGG	4 cut(s)	192, 321, 423, 464
SetI	ASST	6 cut(s)	73, 218, 288, 351, 481, 505
SfaNI	GCATC	1 cut(s)	254
SfcI	CTRYAG	1 cut(s)	276
SinI	GGWCC	1 cut(s)	494
Sse9I	AATT	1 cut(s)	538
SsiI	CCGC	2 cut(s)	98, 470
StyD4I	CCNGG	4 cut(s)	190, 319, 421, 462
TaaI	ACNGT	3 cut(s)	304, 459, 548
TaqI	TCGA	1 cut(s)	254
TasI	AATT	1 cut(s)	538
TatI	WGTACW	1 cut(s)	342
TauI	GCSGC	1 cut(s)	473
TfiI	GAWTC	1 cut(s)	310
Tru1I	TTAA	2 cut(s)	14, 84
Tru9I	TTAA	2 cut(s)	14, 84
TscAI	CASTG	1 cut(s)	235
TseI	GCWGC	6 cut(s)	71, 74, 467, 479, 506, 517
TspDTI	ATGAA	4 cut(s)	150, 154, 302, 551
TspRI	CASTG	1 cut(s)	235
VpaK11BI	GGWCC	1 cut(s)	494
XagI	CCTNNNNNAGG	1 cut(s)	353
XceI	RCATGY	1 cut(s)	530
XcmI	CCANNNNNNNNNTGG	2 cut(s)	392, 470

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.