Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0017399

Physical Location & Seq

Genomic Coordinates Reverse (-)

2821701 .. 2821965

Gene Structure 265 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ22146

Sequence Viewer

CDS Protein Promoter (2k)

Length: 189 bp

ATGGTTCCCTCTCTTATCGAACAGATTAAGAGTGTACTAATTCAGCTCTATGCTCGCCGAGGAGATGCTGTTCTTGATCTTGCATGCGGAAAGGGAGGTGATCTCATCAAATGGGACAAGGCCAAAATTGGGTACTATGTTGGCATTGATATTGCTGAAGGCTCTGTAAGTGCTGAAATCTTATTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001510 GO:0003674 GO:0003824 GO:0004482 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005845 GO:0006139 GO:0006370 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008173 GO:0008174 GO:0008757 GO:0009451 GO:0009452 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016556 GO:0016740 GO:0016741 GO:0032259 GO:0032991 GO:0034518 GO:0034641 GO:0036260 GO:0036265 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0080009 GO:0090304 GO:0106005 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

Pox_MCEL

Protein Analysis

62

Amino Acids

6.71

Weight (kDa)

5.09

Isoelectric Point (pI)

42.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
mRNA_G-N7_MeTrfase	PF03291	8 - 57	3.7e-19	mRNA (guanine-N(7))-methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0017399)

Species	Orthologous Gene IDs
prunus_persica	Prupe.4G197400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0247051
rosa_multiflora	Rmu_sc0002556.1_g000021
rosa_roxburghii	Rroxscaffold_4G00316890 Rroxscaffold_6G00398980
rosa_samantha	Rh4CG160100 Rh5AG063200 Rh5AG444200 Rh5AG444300 Rh6CG423800
rosa_wichuraiana	Rw0G022830 Rw1G010880 Rw2G019180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	87
AcuI	CTGAAG	1 cut(s)	177
AfaI	GTAC	2 cut(s)	36, 134
AfiI	CCNNNNNNNGG	1 cut(s)	129
AloI	GAACNNNNNNTCC	2 cut(s)	54, 86
AluBI	AGCT	1 cut(s)	46
AluI	AGCT	1 cut(s)	46
AoxI	GGCC	1 cut(s)	120
AsuHPI	GGTGA	1 cut(s)	110
BmiI	GGNNCC	1 cut(s)	6
BmsI	GCATC	1 cut(s)	55
BplI	GAGNNNNNCTC	2 cut(s)	87, 119
BsaJI	CCNNGG	1 cut(s)	58
BsaXI	ACNNNNNCTCC	2 cut(s)	54, 84
Bsc4I	CCNNNNNNNGG	1 cut(s)	129
BseDI	CCNNGG	1 cut(s)	58
BseLI	CCNNNNNNNGG	1 cut(s)	129
BseRI	GAGGAG	1 cut(s)	75
BshFI	GGCC	1 cut(s)	122
BslFI	GGGAC	1 cut(s)	128
BslI	CCNNNNNNNGG	1 cut(s)	129
BsmFI	GGGAC	1 cut(s)	128
BsnI	GGCC	1 cut(s)	122
Bsp143I	GATC	2 cut(s)	76, 100
BspACI	CCGC	1 cut(s)	87
BspANI	GGCC	1 cut(s)	122
BspLI	GGNNCC	1 cut(s)	6
BssECI	CCNNGG	1 cut(s)	58
BssMI	GATC	2 cut(s)	76, 100
BstC8I	GCNNGC	2 cut(s)	55, 85
BstKTI	GATC	2 cut(s)	79, 103
BstMBI	GATC	2 cut(s)	76, 100
BstNSI	RCATGY	1 cut(s)	87
BsuRI	GGCC	1 cut(s)	122
Cac8I	GCNNGC	2 cut(s)	55, 85
Csp6I	GTAC	2 cut(s)	35, 133
CviAII	CATG	1 cut(s)	84
CviJI	RGCY	3 cut(s)	46, 122, 162
CviKI_1	RGCY	3 cut(s)	46, 122, 162
CviQI	GTAC	2 cut(s)	35, 133
DpnI	GATC	2 cut(s)	78, 102
DpnII	GATC	2 cut(s)	76, 100
Eco57I	CTGAAG	1 cut(s)	177
FaeI	CATG	1 cut(s)	87
FaiI	YATR	3 cut(s)	51, 85, 138
FaqI	GGGAC	1 cut(s)	128
FatI	CATG	1 cut(s)	83
HaeIII	GGCC	1 cut(s)	122
Hin1II	CATG	1 cut(s)	87
HphI	GGTGA	1 cut(s)	110
Hpy166II	GTNNAC	1 cut(s)	35
Hpy188III	TCNNGA	1 cut(s)	74
Hpy8I	GTNNAC	1 cut(s)	35
HpyAV	CCTTC	1 cut(s)	152
HpyCH4V	TGCA	1 cut(s)	83
Hsp92II	CATG	1 cut(s)	87
Kzo9I	GATC	2 cut(s)	76, 100
LweI	GCATC	1 cut(s)	55
MalI	GATC	2 cut(s)	78, 102
MboI	GATC	2 cut(s)	76, 100
MluCI	AATT	2 cut(s)	39, 126
MnlI	CCTC	3 cut(s)	19, 53, 89
MseI	TTAA	2 cut(s)	27, 187
NdeII	GATC	2 cut(s)	76, 100
NlaIII	CATG	1 cut(s)	87
NlaIV	GGNNCC	1 cut(s)	6
NmeAIII	GCCGAG	1 cut(s)	83
NspI	RCATGY	1 cut(s)	87
PaeI	GCATGC	1 cut(s)	87
PspN4I	GGNNCC	1 cut(s)	6
RsaI	GTAC	2 cut(s)	36, 134
RsaNI	GTAC	2 cut(s)	35, 133
SaqAI	TTAA	2 cut(s)	27, 187
Sau3AI	GATC	2 cut(s)	76, 100
SetI	ASST	2 cut(s)	48, 100
SfaNI	GCATC	1 cut(s)	55
SgeI	CNNG	6 cut(s)	66, 71, 86, 92, 96, 130
SphI	GCATGC	1 cut(s)	87
Sse9I	AATT	2 cut(s)	39, 126
SsiI	CCGC	1 cut(s)	87
TaqI	TCGA	1 cut(s)	18
TasI	AATT	2 cut(s)	39, 126
TatI	WGTACW	1 cut(s)	34
Tru1I	TTAA	2 cut(s)	27, 187
Tru9I	TTAA	2 cut(s)	27, 187
XceI	RCATGY	1 cut(s)	87

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.