Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0017399

Physical Location & Seq

Genomic Coordinates Reverse (-)

5317360 .. 5320292

Gene Structure 2933 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG063200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGAGAGGTGAAGGAGCTATTGCAGTATTGGACGCTGCCACTGGAGGTTGGTTAGATAGAAACAGGCTTGTGGTGGTCTCAAGGGAGAGGATTCAAATTTCTTGGAGGATGAAAGCACAAAGATATTTGCACCTTAACAACTGGATTAAGAGTGTACTAATTCAGCTCTATGCTCGCCGAGGAGATGCTGTTCTTGATCTTGCATGCGGAAAGGTTTGGAGAGTGGATCTAGCACTTGAACGCTTCAATCAATACTACAGTGGAAAGTCGGATAACTTAGGGAAGAGACAAGAGCCTAATGTCGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001510 GO:0003674 GO:0003824 GO:0004482 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005845 GO:0006139 GO:0006370 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008173 GO:0008174 GO:0008757 GO:0009451 GO:0009452 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016556 GO:0016740 GO:0016741 GO:0032259 GO:0032991 GO:0034518 GO:0034641 GO:0036260 GO:0036265 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0080009 GO:0090304 GO:0106005 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

Pox_MCEL

Protein Analysis

102

Amino Acids

11.72

Weight (kDa)

10.08

Isoelectric Point (pI)

23.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
mRNA_G-N7_MeTrfase	PF03291	44 - 71	1.6e-06	mRNA (guanine-N(7))-methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0017399)

Species	Orthologous Gene IDs
prunus_persica	Prupe.4G197400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0247051
rosa_multiflora	Rmu_sc0002556.1_g000021
rosa_roxburghii	Rroxscaffold_4G00316890 Rroxscaffold_6G00398980
rosa_samantha	Rh4CG160100 Rh5AG063200 Rh5AG444200 Rh5AG444300 Rh6CG423800
rosa_wichuraiana	Rw0G022830 Rw1G010880 Rw2G019180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	207
AclWI	GGATC	1 cut(s)	234
AcsI	RAATTY	1 cut(s)	96
AfaI	GTAC	1 cut(s)	156
AfiI	CCNNNNNNNGG	1 cut(s)	302
AgsI	TTSAA	3 cut(s)	95, 239, 247
AloI	GAACNNNNNNTCC	2 cut(s)	174, 206
AluBI	AGCT	2 cut(s)	17, 166
AluI	AGCT	2 cut(s)	17, 166
Alw26I	GTCTC	2 cut(s)	82, 280
AlwI	GGATC	1 cut(s)	234
ApeKI	GCWGC	1 cut(s)	35
ApoI	RAATTY	1 cut(s)	96
AsuHPI	GGTGA	1 cut(s)	20
BbvI	GCAGC	1 cut(s)	22
BcoDI	GTCTC	2 cut(s)	82, 280
BfaI	CTAG	1 cut(s)	230
BfmI	CTRYAG	1 cut(s)	256
BisI	GCNGC	1 cut(s)	36
BlsI	GCNGC	1 cut(s)	37
BmsI	GCATC	1 cut(s)	175
BpmI	CTGGAG	1 cut(s)	63
BpuEI	CTTGAG	1 cut(s)	64
BsaI	GGTCTC	1 cut(s)	82
BsaJI	CCNNGG	1 cut(s)	178
BsaXI	ACNNNNNCTCC	2 cut(s)	174, 204
Bsc4I	CCNNNNNNNGG	1 cut(s)	302
Bse1I	ACTGG	2 cut(s)	46, 146
BseDI	CCNNGG	1 cut(s)	178
BseGI	GGATG	1 cut(s)	114
BseLI	CCNNNNNNNGG	1 cut(s)	302
BseNI	ACTGG	2 cut(s)	46, 146
BseRI	GAGGAG	1 cut(s)	195
BseXI	GCAGC	1 cut(s)	22
BslI	CCNNNNNNNGG	1 cut(s)	302
BsmAI	GTCTC	2 cut(s)	82, 280
Bso31I	GGTCTC	1 cut(s)	82
Bsp143I	GATC	2 cut(s)	196, 226
BspACI	CCGC	1 cut(s)	207
BspPI	GGATC	1 cut(s)	234
BspTNI	GGTCTC	1 cut(s)	82
BsrI	ACTGG	2 cut(s)	46, 146
BssECI	CCNNGG	1 cut(s)	178
BssMI	GATC	2 cut(s)	196, 226
Bst4CI	ACNGT	1 cut(s)	260
Bst6I	CTCTTC	1 cut(s)	278
BstC8I	GCNNGC	2 cut(s)	175, 205
BstDEI	CTNAG	1 cut(s)	277
BstF5I	GGATG	1 cut(s)	114
BstKTI	GATC	2 cut(s)	199, 229
BstMAI	GTCTC	2 cut(s)	82, 280
BstMBI	GATC	2 cut(s)	196, 226
BstNSI	RCATGY	1 cut(s)	207
BstSFI	CTRYAG	1 cut(s)	256
BstV1I	GCAGC	1 cut(s)	22
BstX2I	RGATCY	1 cut(s)	226
BstYI	RGATCY	1 cut(s)	226
BtsCI	GGATG	1 cut(s)	114
BtsIMutI	CAGTG	2 cut(s)	39, 265
Cac8I	GCNNGC	2 cut(s)	175, 205
CseI	GACGC	1 cut(s)	41
Csp6I	GTAC	1 cut(s)	155
CviAII	CATG	1 cut(s)	204
CviJI	RGCY	4 cut(s)	17, 67, 166, 295
CviKI_1	RGCY	4 cut(s)	17, 67, 166, 295
CviQI	GTAC	1 cut(s)	155
DdeI	CTNAG	1 cut(s)	277
DpnI	GATC	2 cut(s)	198, 228
DpnII	GATC	2 cut(s)	196, 226
Eam1104I	CTCTTC	1 cut(s)	278
EarI	CTCTTC	1 cut(s)	278
Eco31I	GGTCTC	1 cut(s)	82
FaeI	CATG	1 cut(s)	207
FaiI	YATR	2 cut(s)	171, 205
FatI	CATG	1 cut(s)	203
Fnu4HI	GCNGC	1 cut(s)	36
FokI	GGATG	1 cut(s)	121
Fsp4HI	GCNGC	1 cut(s)	36
FspBI	CTAG	1 cut(s)	230
GluI	GCNGC	1 cut(s)	36
GsuI	CTGGAG	1 cut(s)	63
HgaI	GACGC	1 cut(s)	41
Hin1II	CATG	1 cut(s)	207
HinfI	GANTC	1 cut(s)	91
HphI	GGTGA	1 cut(s)	20
Hpy166II	GTNNAC	1 cut(s)	155
Hpy188I	TCNGA	2 cut(s)	271, 305
Hpy188III	TCNNGA	1 cut(s)	194
Hpy8I	GTNNAC	1 cut(s)	155
HpyAV	CCTTC	1 cut(s)	5
HpyCH4III	ACNGT	1 cut(s)	260
HpyCH4V	TGCA	3 cut(s)	23, 130, 203
HpyF3I	CTNAG	1 cut(s)	277
Hsp92II	CATG	1 cut(s)	207
Kzo9I	GATC	2 cut(s)	196, 226
LmnI	GCTCC	1 cut(s)	14
LpnPI	CCDG	3 cut(s)	27, 49, 127
Lsp1109I	GCAGC	1 cut(s)	22
LweI	GCATC	1 cut(s)	175
MaeI	CTAG	1 cut(s)	230
MalI	GATC	2 cut(s)	198, 228
MboI	GATC	2 cut(s)	196, 226
MboII	GAAGA	1 cut(s)	295
MflI	RGATCY	1 cut(s)	226
MluCI	AATT	2 cut(s)	96, 159
MmeI	TCCRAC	2 cut(s)	249, 283
MnlI	CCTC	4 cut(s)	38, 81, 99, 173
MseI	TTAA	2 cut(s)	135, 147
NdeII	GATC	2 cut(s)	196, 226
NlaIII	CATG	1 cut(s)	207
NmeAIII	GCCGAG	1 cut(s)	203
NspI	RCATGY	1 cut(s)	207
PaeI	GCATGC	1 cut(s)	207
PfeI	GAWTC	1 cut(s)	91
PkrI	GCNGC	1 cut(s)	37
PsuI	RGATCY	1 cut(s)	226
RsaI	GTAC	1 cut(s)	156
RsaNI	GTAC	1 cut(s)	155
SaqAI	TTAA	2 cut(s)	135, 147
SatI	GCNGC	1 cut(s)	36
Sau3AI	GATC	2 cut(s)	196, 226
SetI	ASST	6 cut(s)	10, 19, 49, 135, 168, 216
SfaNI	GCATC	1 cut(s)	175
SfcI	CTRYAG	1 cut(s)	256
SmlI	CTYRAG	1 cut(s)	79
SmoI	CTYRAG	1 cut(s)	79
SphI	GCATGC	1 cut(s)	207
Sse9I	AATT	2 cut(s)	96, 159
SsiI	CCGC	1 cut(s)	207
SspMI	CTAG	1 cut(s)	230
TaaI	ACNGT	1 cut(s)	260
TasI	AATT	2 cut(s)	96, 159
TatI	WGTACW	1 cut(s)	154
TfiI	GAWTC	1 cut(s)	91
Tru1I	TTAA	2 cut(s)	135, 147
Tru9I	TTAA	2 cut(s)	135, 147
TscAI	CASTG	2 cut(s)	46, 265
TseI	GCWGC	1 cut(s)	35
TspDTI	ATGAA	1 cut(s)	125
TspRI	CASTG	2 cut(s)	46, 265
XapI	RAATTY	1 cut(s)	96
XceI	RCATGY	1 cut(s)	207
XspI	CTAG	1 cut(s)	230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.