Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0004405

Physical Location & Seq

Genomic Coordinates Reverse (-)

12081257 .. 12085881

Gene Structure 4625 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G197400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

ATGAAACGAGGGTACTCAGAATCCCCATCCACCTCTCTTGGGCCACCTCAATCCAGGTTAAAGCCCAACCCAGAAGGTGATTCACAATTCTTGGAGGATGAAAGCACAAAAATTTTTGCACGTAAAGTGGCAGATCATTACAGTGCAAGGACGAATCAAACGTTGGAAGAACGAGAAGCTAGTCCAATCATCCATTTAAAAAAGCTTAACAATTGGATTAAGAGTGTCTTAATTCAACTCTATGCTCGCAGAGGAGATGCTGTACTTGATCTTGCATGTGGCAAGGGGGGTGATCTCATCAAATGGGACAAGGCCAAAATTGGATATTATGTTGGCATCGATATCGCTGAAGGCTCAATAGAAGATTGTCGTACTCGTTACAATGGCGATGCTGACCATCATCAACGCCGTAAAAAATTTACATTTCCCGCCCACCTTATATGTGGAGATTGTTTTGAGGTTCGCCTGGATAAAGTCCTGGCTGATGATGCCCCCTTTGATATTTGCAGTTGCCAGTTTGCCTTGCATTATTCCTGGTCTACTGAAGCACGTGCACGACGAGCCTTGGCTAATGTCTCAGCTTTACTTCGTCCTGGCGGTACTTTCATTGGAACAATGCCTGATGCCAATGTGATCATCAAAAAGCTTAGAGAAGCTGAAGGATTGGTCTTTGGTAATAGTGTCTACTGGATACGATTTGATGAAGAATTTTCTGAAAAGAAATTCAAGTCTTCAAGCCCCTTTGGTATCCAGTACAAGTTTCACCTGGAGGATGCTGTTGATTGTCCTGAATGGATTGTCCCCTTTCATGTCTTCAAATCCCTGGTAGAAGAGTATGATATGGAGCTAGTTTTTGTGAAGAACTCACATGAATTTGTGCACGAGTATATGAAAAAACCAGAATATGTGGAGCTAATGCGGAGGCTTGGTGCATTAGGTGATGGTAACCAAGATCAGAGCACGCTATCACAAGATGAATGGGAAGTAGCTTATTTGTATTTGGCATTTGTCTTGAGGAAGCGAGGCGAACCTGATCGGGCACAAGTAAATGGTAGAAGAGACAAAGGGAAGATGCATATATCAAAAGAGGACATAATGTACGTCCGCAATGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001510 GO:0003674 GO:0003824 GO:0004482 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005845 GO:0006139 GO:0006370 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008173 GO:0008174 GO:0008757 GO:0009451 GO:0009452 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016556 GO:0016740 GO:0016741 GO:0032259 GO:0032991 GO:0034518 GO:0034641 GO:0036260 GO:0036265 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0080009 GO:0090304 GO:0106005 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

Pox_MCEL

Protein Analysis

372

Amino Acids

42.62

Weight (kDa)

6.44

Isoelectric Point (pI)

47.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004405)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20650 AT3G20650 AT3G20650
fragaria_vesca	FvH4_3g21511 FvH4_3g21511 FvH4_3g21511 FvH4_6g24821
malus_domestica	MD03G1215400.v1.1 MD11G1013800.v1.1 MD11G1230000.v1.1
prunus_persica	Prupe.4G197400_v2.0.a1
pyrus_communis	pycom03g16380 pycom11g20380
rosa_chinensis	RchiOBHm_Chr1g0332461 RchiOBHm_Chr5g0036961
rosa_laevigata	RLG00000019767 RLG00000029593 RLG00000029668 RLG00000033739
rosa_multiflora	Rmu_sc0000574.1_g000061 Rmu_sc0006147.1_g000007 Rmu_sc0007663.1_g000020 Rmu_sc0024051.1_g000002
rosa_roxburghii	Rroxscaffold_1G00043990 Rroxscaffold_2G00105880
rosa_rugosa	Rorug01G0101300 Rorug05G0159400
rosa_samantha	Rh1DG129900 Rh5DG261500
rosa_wichuraiana	Rw1G010160 Rw1G015570 Rw5G023160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	539, 684
AciI	CCGC	4 cut(s)	429, 597, 919, 1105
AclI	AACGTT	1 cut(s)	161
AcsI	RAATTY	5 cut(s)	111, 416, 707, 722, 872
AcuI	CTGAAG	3 cut(s)	369, 564, 678
AcvI	CACGTG	1 cut(s)	551
AfaI	GTAC	6 cut(s)	14, 264, 373, 601, 755, 1100
AfiI	CCNNNNNNNGG	1 cut(s)	39
AgsI	TTSAA	4 cut(s)	236, 727, 735, 817
AjnI	CCWGG	7 cut(s)	53, 465, 477, 533, 592, 765, 822
AjuI	GAANNNNNNNTTGG	2 cut(s)	146, 178
AluBI	AGCT	8 cut(s)	179, 205, 581, 646, 656, 847, 913, 989
AluI	AGCT	8 cut(s)	179, 205, 581, 646, 656, 847, 913, 989
Alw21I	GWGCWC	3 cut(s)	556, 882, 962
Alw26I	GTCTC	2 cut(s)	580, 1053
Alw44I	GTGCAC	2 cut(s)	552, 878
AoxI	GGCC	2 cut(s)	41, 312
ApaLI	GTGCAC	2 cut(s)	552, 878
ApoI	RAATTY	5 cut(s)	111, 416, 707, 722, 872
AspS9I	GGNCC	1 cut(s)	41
AsuHPI	GGTGA	4 cut(s)	89, 302, 755, 950
BaeGI	GKGCMC	3 cut(s)	556, 882, 1042
BauI	CACGAG	1 cut(s)	881
BbrPI	CACGTG	1 cut(s)	551
BbsI	GAAGAC	2 cut(s)	723, 805
Bbv12I	GWGCWC	3 cut(s)	556, 882, 962
BccI	CCATC	3 cut(s)	34, 405, 935
BceAI	ACGGC	1 cut(s)	393
BcgI	CGANNNNNNTGC	2 cut(s)	325, 359
BciT130I	CCWGG	7 cut(s)	55, 467, 479, 535, 594, 767, 824
BciVI	GTATCC	2 cut(s)	684, 758
BclI	TGATCA	1 cut(s)	633
BcoDI	GTCTC	2 cut(s)	580, 1053
BfaI	CTAG	2 cut(s)	180, 848
BfuI	GTATCC	2 cut(s)	684, 758
Bme1390I	CCNGG	7 cut(s)	55, 467, 479, 535, 594, 767, 824
BmgT120I	GGNCC	1 cut(s)	41
BmrFI	CCNGG	7 cut(s)	55, 467, 479, 535, 594, 767, 824
BmsI	GCATC	7 cut(s)	247, 345, 379, 478, 613, 763, 1062
BpiI	GAAGAC	2 cut(s)	723, 805
BpmI	CTGGAG	1 cut(s)	788
BpuEI	CTTGAG	1 cut(s)	1033
Bsa29I	ATCGAT	1 cut(s)	339
BsaAI	YACGTR	2 cut(s)	122, 551
BsaJI	CCNNGG	2 cut(s)	564, 822
BsaXI	ACNNNNNCTCC	4 cut(s)	246, 276, 913, 943
Bsc4I	CCNNNNNNNGG	1 cut(s)	39
Bse1I	ACTGG	3 cut(s)	514, 692, 751
Bse3DI	GCAATG	1 cut(s)	1114
BseBI	CCWGG	7 cut(s)	55, 467, 479, 535, 594, 767, 824
BseCI	ATCGAT	1 cut(s)	339
BseDI	CCNNGG	2 cut(s)	564, 822
BseGI	GGATG	4 cut(s)	26, 103, 189, 778
BseLI	CCNNNNNNNGG	1 cut(s)	39
BseMI	GCAATG	1 cut(s)	1114
BseMII	CTCAG	2 cut(s)	30, 591
BseNI	ACTGG	3 cut(s)	514, 692, 751
BseRI	GAGGAG	1 cut(s)	267
BseSI	GKGCMC	3 cut(s)	556, 882, 1042
BshFI	GGCC	2 cut(s)	43, 314
BshVI	ATCGAT	1 cut(s)	339
BsiHKAI	GWGCWC	3 cut(s)	556, 882, 962
BslFI	GGGAC	2 cut(s)	320, 785
BslI	CCNNNNNNNGG	1 cut(s)	39
BsmAI	GTCTC	2 cut(s)	580, 1053
BsmFI	GGGAC	2 cut(s)	320, 785
BsnI	GGCC	2 cut(s)	43, 314
Bsp1286I	GDGCHC	4 cut(s)	556, 882, 962, 1042
Bsp143I	GATC	6 cut(s)	133, 268, 292, 633, 952, 1033
BspACI	CCGC	4 cut(s)	429, 597, 919, 1105
BspANI	GGCC	2 cut(s)	43, 314
BspCNI	CTCAG	2 cut(s)	29, 590
BspDI	ATCGAT	1 cut(s)	339
BsrDI	GCAATG	1 cut(s)	1114
BsrI	ACTGG	3 cut(s)	514, 692, 751
BssECI	CCNNGG	2 cut(s)	564, 822
BssMI	GATC	6 cut(s)	133, 268, 292, 633, 952, 1033
BssSI	CACGAG	1 cut(s)	881
BssT1I	CCWWGG	1 cut(s)	564
Bst2BI	CACGAG	1 cut(s)	881
Bst2UI	CCWGG	7 cut(s)	55, 467, 479, 535, 594, 767, 824
Bst4CI	ACNGT	1 cut(s)	143
Bst6I	CTCTTC	2 cut(s)	825, 1051
BstBAI	YACGTR	2 cut(s)	122, 551
BstC8I	GCNNGC	2 cut(s)	247, 962
BstDEI	CTNAG	3 cut(s)	16, 577, 647
BstEII	GGTNACC	1 cut(s)	944
BstF5I	GGATG	4 cut(s)	26, 103, 189, 778
BstKTI	GATC	6 cut(s)	136, 271, 295, 636, 955, 1036
BstMAI	GTCTC	2 cut(s)	580, 1053
BstMBI	GATC	6 cut(s)	133, 268, 292, 633, 952, 1033
BstMWI	GCNNNNNNNGC	2 cut(s)	488, 560
BstNI	CCWGG	7 cut(s)	55, 467, 479, 535, 594, 767, 824
BstNSI	RCATGY	1 cut(s)	279
BstPI	GGTNACC	1 cut(s)	944
BstSCI	CCNGG	7 cut(s)	53, 465, 477, 533, 592, 765, 822
BstSLI	GKGCMC	3 cut(s)	556, 882, 1042
BstV2I	GAAGAC	2 cut(s)	723, 805
Bsu15I	ATCGAT	1 cut(s)	339
BsuI	GTATCC	2 cut(s)	684, 758
BsuRI	GGCC	2 cut(s)	43, 314
BsuTUI	ATCGAT	1 cut(s)	339
BtgZI	GCGATG	1 cut(s)	402
BtsCI	GGATG	4 cut(s)	26, 103, 189, 778
BtsIMutI	CAGTG	1 cut(s)	148
Cac8I	GCNNGC	2 cut(s)	247, 962
Cfr13I	GGNCC	1 cut(s)	41
ClaI	ATCGAT	1 cut(s)	339
Csp6I	GTAC	6 cut(s)	13, 263, 372, 600, 754, 1099
CspCI	CAANNNNNGTGG	2 cut(s)	19, 54
CviAII	CATG	3 cut(s)	276, 809, 869
CviQI	GTAC	6 cut(s)	13, 263, 372, 600, 754, 1099
DdeI	CTNAG	3 cut(s)	16, 577, 647
DpnI	GATC	6 cut(s)	135, 270, 294, 635, 954, 1035
DpnII	GATC	6 cut(s)	133, 268, 292, 633, 952, 1033
DraI	TTTAAA	1 cut(s)	198
Eam1104I	CTCTTC	2 cut(s)	825, 1051
EarI	CTCTTC	2 cut(s)	825, 1051
Eco130I	CCWWGG	1 cut(s)	564
Eco32I	GATATC	1 cut(s)	343
Eco57I	CTGAAG	3 cut(s)	369, 564, 678
Eco72I	CACGTG	1 cut(s)	551
Eco91I	GGTNACC	1 cut(s)	944
EcoO65I	GGTNACC	1 cut(s)	944
EcoRII	CCWGG	7 cut(s)	53, 465, 477, 533, 592, 765, 822
EcoRV	GATATC	1 cut(s)	343
EcoT14I	CCWWGG	1 cut(s)	564
EcoT22I	ATGCAT	1 cut(s)	1077
ErhI	CCWWGG	1 cut(s)	564
FaeI	CATG	3 cut(s)	279, 812, 872
FalI	AAGNNNNNCTT	2 cut(s)	212, 244
FaqI	GGGAC	2 cut(s)	320, 785
FatI	CATG	3 cut(s)	275, 808, 868
FauI	CCCGC	1 cut(s)	436
FbaI	TGATCA	1 cut(s)	633
FblI	GTMKAC	2 cut(s)	539, 684
FokI	GGATG	4 cut(s)	13, 110, 176, 785
FspBI	CTAG	2 cut(s)	180, 848
GsuI	CTGGAG	1 cut(s)	788
HaeIII	GGCC	2 cut(s)	43, 314
Hin1II	CATG	3 cut(s)	279, 812, 872
HindIII	AAGCTT	2 cut(s)	203, 644
HinfI	GANTC	3 cut(s)	20, 80, 154
HphI	GGTGA	4 cut(s)	89, 302, 755, 950
Hpy166II	GTNNAC	4 cut(s)	540, 554, 685, 880
Hpy188I	TCNGA	3 cut(s)	19, 715, 957
Hpy188III	TCNNGA	2 cut(s)	788, 1012
Hpy8I	GTNNAC	4 cut(s)	540, 554, 685, 880
Hpy99I	CGWCG	1 cut(s)	561
HpyAV	CCTTC	3 cut(s)	68, 344, 653
HpyCH4III	ACNGT	1 cut(s)	143
HpyCH4IV	ACGT	4 cut(s)	121, 161, 550, 1101
HpyCH4V	TGCA	9 cut(s)	119, 146, 275, 507, 526, 554, 880, 932, 1075
HpyF10VI	GCNNNNNNNGC	2 cut(s)	488, 560
HpyF3I	CTNAG	3 cut(s)	16, 577, 647
HpySE526I	ACGT	4 cut(s)	121, 161, 550, 1101
Hsp92II	CATG	3 cut(s)	279, 812, 872
Ksp22I	TGATCA	1 cut(s)	633
Kzo9I	GATC	6 cut(s)	133, 268, 292, 633, 952, 1033
LmnI	GCTCC	2 cut(s)	844, 910
LweI	GCATC	7 cut(s)	247, 345, 379, 478, 613, 763, 1062
MaeI	CTAG	2 cut(s)	180, 848
MaeII	ACGT	4 cut(s)	121, 161, 550, 1101
MaeIII	GTNAC	2 cut(s)	377, 944
MalI	GATC	6 cut(s)	135, 270, 294, 635, 954, 1035
MboI	GATC	6 cut(s)	133, 268, 292, 633, 952, 1033
MboII	GAAGA	9 cut(s)	179, 374, 716, 723, 805, 842, 871, 1068, 1081
MfeI	CAATTG	1 cut(s)	211
MhlI	GDGCHC	4 cut(s)	556, 882, 962, 1042
MluCI	AATT	9 cut(s)	86, 111, 211, 231, 318, 416, 707, 722, 872
MmeI	TCCRAC	1 cut(s)	144
Mph1103I	ATGCAT	1 cut(s)	1077
MseI	TTAA	6 cut(s)	59, 197, 207, 219, 230, 1114
MslI	CAYNNNNRTG	1 cut(s)	141
MspR9I	CCNGG	7 cut(s)	55, 467, 479, 535, 594, 767, 824
MunI	CAATTG	1 cut(s)	211
MvaI	CCWGG	7 cut(s)	55, 467, 479, 535, 594, 767, 824
MwoI	GCNNNNNNNGC	2 cut(s)	488, 560
NdeII	GATC	6 cut(s)	133, 268, 292, 633, 952, 1033
NlaIII	CATG	3 cut(s)	279, 812, 872
NsiI	ATGCAT	1 cut(s)	1077
NspI	RCATGY	1 cut(s)	279
PcsI	WCGNNNNNNNCGW	2 cut(s)	158, 556
PfeI	GAWTC	3 cut(s)	20, 80, 154
PmaCI	CACGTG	1 cut(s)	551
PmlI	CACGTG	1 cut(s)	551
Ppu21I	YACGTR	2 cut(s)	122, 551
Psp1406I	AACGTT	1 cut(s)	161
Psp6I	CCWGG	7 cut(s)	53, 465, 477, 533, 592, 765, 822
PspCI	CACGTG	1 cut(s)	551
PspEI	GGTNACC	1 cut(s)	944
PspGI	CCWGG	7 cut(s)	53, 465, 477, 533, 592, 765, 822
PspPI	GGNCC	1 cut(s)	41
RsaI	GTAC	6 cut(s)	14, 264, 373, 601, 755, 1100
RsaNI	GTAC	6 cut(s)	13, 263, 372, 600, 754, 1099
RseI	CAYNNNNRTG	1 cut(s)	141
SaqAI	TTAA	6 cut(s)	59, 197, 207, 219, 230, 1114
Sau3AI	GATC	6 cut(s)	133, 268, 292, 633, 952, 1033
Sau96I	GGNCC	1 cut(s)	41
ScrFI	CCNGG	7 cut(s)	55, 467, 479, 535, 594, 767, 824
SduI	GDGCHC	4 cut(s)	556, 882, 962, 1042
SfaNI	GCATC	7 cut(s)	247, 345, 379, 478, 613, 763, 1062
SmiMI	CAYNNNNRTG	1 cut(s)	141
SmlI	CTYRAG	1 cut(s)	1012
SmoI	CTYRAG	1 cut(s)	1012
Sse9I	AATT	9 cut(s)	86, 111, 211, 231, 318, 416, 707, 722, 872
SsiI	CCGC	4 cut(s)	429, 597, 919, 1105
SspMI	CTAG	2 cut(s)	180, 848
StyD4I	CCNGG	7 cut(s)	53, 465, 477, 533, 592, 765, 822
StyI	CCWWGG	1 cut(s)	564
TaaI	ACNGT	1 cut(s)	143
TaiI	ACGT	4 cut(s)	124, 164, 553, 1104
TaqI	TCGA	1 cut(s)	339
TasI	AATT	9 cut(s)	86, 111, 211, 231, 318, 416, 707, 722, 872
TatI	WGTACW	2 cut(s)	262, 753
TfiI	GAWTC	3 cut(s)	20, 80, 154
Tru1I	TTAA	6 cut(s)	59, 197, 207, 219, 230, 1114
Tru9I	TTAA	6 cut(s)	59, 197, 207, 219, 230, 1114
TscAI	CASTG	1 cut(s)	148
TspDTI	ATGAA	8 cut(s)	17, 114, 595, 717, 797, 885, 905, 990
TspRI	CASTG	1 cut(s)	148
VneI	GTGCAC	2 cut(s)	552, 878
XapI	RAATTY	5 cut(s)	111, 416, 707, 722, 872
XceI	RCATGY	1 cut(s)	279
XcmI	CCANNNNNNNNNTGG	1 cut(s)	440
XmiI	GTMKAC	2 cut(s)	539, 684
XspI	CTAG	2 cut(s)	180, 848
Zsp2I	ATGCAT	1 cut(s)	1077

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.