Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0004405

Physical Location & Seq

Genomic Coordinates Reverse (-)

18807331 .. 18811128

Gene Structure 3798 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g24821.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGTACTTGAATGGAGATGCTGTTCTTGATCTTGCATGCGGCAAGGGAGGTGATCTAATCAAATGGGACAAGGCTAATATTGGGTACTATGTTGTCATTGATATTGCGGAAGGCTCTATAGAAGATTGTCGTACCCATTACAATGGTGATGCCGATCATCATCAACGCCGTAAACAGTTTACATTTCCTGCACGCCTTATCTGTGGAGACTGCTATGAGGTTCGACTGGATAAAGCCCTGGCGGATGATGCACCCTTTGATATTTGCAGTTGCCAGTTTGCCTTGCATTATTCCTGGTCCACTGAAGCACGAGCACGGAGAGCCTTGGCTAATGTTTCAGCCTTACTTCGCCCAGGTGGAACTTTCATTGGAACAATGCCAGACGCTAATGTGATCATCAAAAACCTGAGAGAAGCTGAAGGCTTATTCTTTGGAAATAGTGTCTACTGGATACGATTTGATGAGGAATTTTCAGAAAAGAAATTTACGTCTTCAAGCCCCTTTGGTATCAAGTACAAGTTTCATCTGGAGGATGCTGTTGATTGCCCTGAATGGATCGTCCCCTTTCATTTATTCAAATCATTGGTAGAAGAGTATGATATGGAGTTAATTTTTGTGAAGAACTCTCATGAATTTGTGCACGAGTATATGAAAGGACCAGAGTATGTAGATTTAATGCGGAGGATTGGTGCATTAGGTGACGGTAACCAAGATCAGAGTACACTATCACAAGATGAATGGGAAGTGGCCTATTTGTACTTGTCATTTGTCTTGAGGAAGCGTGGCCAACCTGATCGGACTCAACCAAATGGTAGAAGAGATGAAGGGAACATGCGTATATCAAAAGAGGACATATTGAACATTGAACATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001510 GO:0003674 GO:0003824 GO:0004482 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005845 GO:0006139 GO:0006370 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008173 GO:0008174 GO:0008757 GO:0009451 GO:0009452 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016556 GO:0016740 GO:0016741 GO:0032259 GO:0032991 GO:0034518 GO:0034641 GO:0036260 GO:0036265 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0080009 GO:0090304 GO:0106005 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

Pox_MCEL

Protein Analysis

291

Amino Acids

33.35

Weight (kDa)

5.18

Isoelectric Point (pI)

48.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_31	PF13847	5 - 128	4.4e-07	Methyltransferase domain
mRNA_G-N7_MeTrfase	PF03291	7 - 261	4.7e-105	mRNA (guanine-N(7))-methyltransferase domain
Methyltransf_25	PF13649	8 - 120	6.2e-10	Methyltransferase domain
Methyltransf_12	PF08242	9 - 122	4.6e-09	Methyltransferase domain
Methyltransf_11	PF08241	9 - 123	1.1e-08	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004405)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20650 AT3G20650 AT3G20650
fragaria_vesca	FvH4_3g21511 FvH4_3g21511 FvH4_3g21511 FvH4_6g24821
malus_domestica	MD03G1215400.v1.1 MD11G1013800.v1.1 MD11G1230000.v1.1
prunus_persica	Prupe.4G197400_v2.0.a1
pyrus_communis	pycom03g16380 pycom11g20380
rosa_chinensis	RchiOBHm_Chr1g0332461 RchiOBHm_Chr5g0036961
rosa_laevigata	RLG00000019767 RLG00000029593 RLG00000029668 RLG00000033739
rosa_multiflora	Rmu_sc0000574.1_g000061 Rmu_sc0006147.1_g000007 Rmu_sc0007663.1_g000020 Rmu_sc0024051.1_g000002
rosa_roxburghii	Rroxscaffold_1G00043990 Rroxscaffold_2G00105880
rosa_rugosa	Rorug01G0101300 Rorug05G0159400
rosa_samantha	Rh1DG129900 Rh5DG261500
rosa_wichuraiana	Rw1G010160 Rw1G015570 Rw5G023160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	444
AciI	CCGC	4 cut(s)	39, 107, 242, 679
AclWI	GGATC	1 cut(s)	563
AcoI	YGGCCR	1 cut(s)	784
AcsI	RAATTY	3 cut(s)	467, 482, 632
AcuI	CTGAAG	2 cut(s)	324, 438
AfaI	GTAC	6 cut(s)	5, 86, 133, 515, 721, 758
AgsI	TTSAA	5 cut(s)	10, 495, 577, 859, 866
AjnI	CCWGG	3 cut(s)	237, 293, 352
AloI	GAACNNNNNNTCC	1 cut(s)	38
AluBI	AGCT	1 cut(s)	416
AluI	AGCT	1 cut(s)	416
Alw21I	GWGCWC	2 cut(s)	316, 642
Alw26I	GTCTC	1 cut(s)	201
Alw44I	GTGCAC	1 cut(s)	638
AlwI	GGATC	1 cut(s)	563
AoxI	GGCC	2 cut(s)	747, 784
ApaLI	GTGCAC	1 cut(s)	638
ApoI	RAATTY	3 cut(s)	467, 482, 632
AspS9I	GGNCC	2 cut(s)	297, 656
AsuHPI	GGTGA	3 cut(s)	62, 158, 710
AvaII	GGWCC	2 cut(s)	297, 656
BaeGI	GKGCMC	1 cut(s)	642
BalI	TGGCCA	1 cut(s)	786
BauI	CACGAG	2 cut(s)	309, 641
BbsI	GAAGAC	1 cut(s)	483
Bbv12I	GWGCWC	2 cut(s)	316, 642
BceAI	ACGGC	1 cut(s)	153
BciT130I	CCWGG	3 cut(s)	239, 295, 354
BciVI	GTATCC	1 cut(s)	444
BclI	TGATCA	1 cut(s)	393
BcoDI	GTCTC	1 cut(s)	201
BfmI	CTRYAG	1 cut(s)	117
BfuI	GTATCC	1 cut(s)	444
BisI	GCNGC	1 cut(s)	40
BlsI	GCNGC	1 cut(s)	41
Bme1390I	CCNGG	3 cut(s)	239, 295, 354
Bme18I	GGWCC	2 cut(s)	297, 656
BmgT120I	GGNCC	2 cut(s)	297, 656
BmrFI	CCNGG	3 cut(s)	239, 295, 354
BmsI	GCATC	4 cut(s)	7, 139, 238, 523
BpiI	GAAGAC	1 cut(s)	483
BpmI	CTGGAG	1 cut(s)	548
BpuEI	CTTGAG	1 cut(s)	793
BsaBI	GATNNNNATC	2 cut(s)	153, 159
BsaJI	CCNNGG	3 cut(s)	237, 324, 352
BsaXI	ACNNNNNCTCC	4 cut(s)	6, 36, 673, 703
Bse1I	ACTGG	3 cut(s)	231, 274, 452
Bse8I	GATNNNNATC	2 cut(s)	153, 159
BseBI	CCWGG	3 cut(s)	239, 295, 354
BseDI	CCNNGG	3 cut(s)	237, 324, 352
BseGI	GGATG	2 cut(s)	250, 538
BseJI	GATNNNNATC	2 cut(s)	153, 159
BseMII	CTCAG	1 cut(s)	398
BseNI	ACTGG	3 cut(s)	231, 274, 452
BseSI	GKGCMC	1 cut(s)	642
BsgI	GTGCAG	1 cut(s)	174
BshFI	GGCC	2 cut(s)	749, 786
BsiHKAI	GWGCWC	2 cut(s)	316, 642
BslFI	GGGAC	2 cut(s)	80, 545
BsmAI	GTCTC	1 cut(s)	201
BsmFI	GGGAC	2 cut(s)	80, 545
BsnI	GGCC	2 cut(s)	749, 786
Bsp1286I	GDGCHC	2 cut(s)	316, 642
Bsp143I	GATC	7 cut(s)	28, 52, 154, 393, 555, 712, 793
BspACI	CCGC	4 cut(s)	39, 107, 242, 679
BspANI	GGCC	2 cut(s)	749, 786
BspCNI	CTCAG	1 cut(s)	399
BspHI	TCATGA	1 cut(s)	628
BspPI	GGATC	1 cut(s)	563
BsrI	ACTGG	3 cut(s)	231, 274, 452
BssECI	CCNNGG	3 cut(s)	237, 324, 352
BssMI	GATC	7 cut(s)	28, 52, 154, 393, 555, 712, 793
BssSI	CACGAG	2 cut(s)	309, 641
BssT1I	CCWWGG	1 cut(s)	324
Bst2BI	CACGAG	2 cut(s)	309, 641
Bst2UI	CCWGG	3 cut(s)	239, 295, 354
Bst4CI	ACNGT	2 cut(s)	177, 704
Bst6I	CTCTTC	2 cut(s)	585, 811
BstC8I	GCNNGC	2 cut(s)	37, 193
BstDEI	CTNAG	1 cut(s)	407
BstEII	GGTNACC	1 cut(s)	704
BstF5I	GGATG	2 cut(s)	250, 538
BstKTI	GATC	7 cut(s)	31, 55, 157, 396, 558, 715, 796
BstMAI	GTCTC	1 cut(s)	201
BstMBI	GATC	7 cut(s)	28, 52, 154, 393, 555, 712, 793
BstMWI	GCNNNNNNNGC	2 cut(s)	248, 320
BstNI	CCWGG	3 cut(s)	239, 295, 354
BstNSI	RCATGY	2 cut(s)	39, 835
BstPI	GGTNACC	1 cut(s)	704
BstSCI	CCNGG	3 cut(s)	237, 293, 352
BstSFI	CTRYAG	1 cut(s)	117
BstSLI	GKGCMC	1 cut(s)	642
BstV2I	GAAGAC	1 cut(s)	483
BstXI	CCANNNNNNTGG	1 cut(s)	143
BsuI	GTATCC	1 cut(s)	444
BsuRI	GGCC	2 cut(s)	749, 786
BtsCI	GGATG	2 cut(s)	250, 538
BtsIMutI	CAGTG	1 cut(s)	300
Cac8I	GCNNGC	2 cut(s)	37, 193
CciI	TCATGA	1 cut(s)	628
Cfr13I	GGNCC	2 cut(s)	297, 656
CseI	GACGC	1 cut(s)	392
Csp6I	GTAC	6 cut(s)	4, 85, 132, 514, 720, 757
CviAII	CATG	3 cut(s)	36, 629, 832
CviQI	GTAC	6 cut(s)	4, 85, 132, 514, 720, 757
DdeI	CTNAG	1 cut(s)	407
DpnI	GATC	7 cut(s)	30, 54, 156, 395, 557, 714, 795
DpnII	GATC	7 cut(s)	28, 52, 154, 393, 555, 712, 793
EaeI	YGGCCR	1 cut(s)	784
Eam1104I	CTCTTC	2 cut(s)	585, 811
EarI	CTCTTC	2 cut(s)	585, 811
EciI	GGCGGA	1 cut(s)	257
Eco130I	CCWWGG	1 cut(s)	324
Eco47I	GGWCC	2 cut(s)	297, 656
Eco57I	CTGAAG	2 cut(s)	324, 438
Eco91I	GGTNACC	1 cut(s)	704
EcoO65I	GGTNACC	1 cut(s)	704
EcoRII	CCWGG	3 cut(s)	237, 293, 352
EcoT14I	CCWWGG	1 cut(s)	324
ErhI	CCWWGG	1 cut(s)	324
FaeI	CATG	3 cut(s)	39, 632, 835
FaqI	GGGAC	2 cut(s)	80, 545
FatI	CATG	3 cut(s)	35, 628, 831
FbaI	TGATCA	1 cut(s)	393
FblI	GTMKAC	1 cut(s)	444
Fnu4HI	GCNGC	1 cut(s)	40
FokI	GGATG	2 cut(s)	257, 545
Fsp4HI	GCNGC	1 cut(s)	40
GluI	GCNGC	1 cut(s)	40
GsuI	CTGGAG	1 cut(s)	548
HaeIII	GGCC	2 cut(s)	749, 786
HgaI	GACGC	1 cut(s)	392
Hin1II	CATG	3 cut(s)	39, 632, 835
HinfI	GANTC	1 cut(s)	799
HphI	GGTGA	3 cut(s)	62, 158, 710
Hpy166II	GTNNAC	6 cut(s)	173, 180, 300, 445, 640, 722
Hpy188I	TCNGA	3 cut(s)	475, 717, 798
Hpy188III	TCNNGA	4 cut(s)	26, 527, 629, 772
Hpy8I	GTNNAC	6 cut(s)	173, 180, 300, 445, 640, 722
HpyAV	CCTTC	3 cut(s)	104, 413, 818
HpyCH4III	ACNGT	2 cut(s)	177, 704
HpyCH4IV	ACGT	1 cut(s)	488
HpyCH4V	TGCA	7 cut(s)	35, 191, 251, 267, 286, 640, 692
HpyF10VI	GCNNNNNNNGC	2 cut(s)	248, 320
HpyF3I	CTNAG	1 cut(s)	407
HpySE526I	ACGT	1 cut(s)	488
Hsp92II	CATG	3 cut(s)	39, 632, 835
Ksp22I	TGATCA	1 cut(s)	393
Kzo9I	GATC	7 cut(s)	28, 52, 154, 393, 555, 712, 793
LweI	GCATC	4 cut(s)	7, 139, 238, 523
MaeII	ACGT	1 cut(s)	488
MaeIII	GTNAC	2 cut(s)	698, 704
MalI	GATC	7 cut(s)	30, 54, 156, 395, 557, 714, 795
MboI	GATC	7 cut(s)	28, 52, 154, 393, 555, 712, 793
MboII	GAAGA	5 cut(s)	134, 483, 602, 631, 828
MhlI	GDGCHC	2 cut(s)	316, 642
MlsI	TGGCCA	1 cut(s)	786
MluCI	AATT	4 cut(s)	467, 482, 609, 632
MluNI	TGGCCA	1 cut(s)	786
MlyI	GAGTC	1 cut(s)	793
MnlI	CCTC	7 cut(s)	41, 211, 457, 523, 675, 768, 841
Mox20I	TGGCCA	1 cut(s)	786
MscI	TGGCCA	1 cut(s)	786
MseI	TTAA	2 cut(s)	608, 674
MslI	CAYNNNNRTG	1 cut(s)	141
Msp20I	TGGCCA	1 cut(s)	786
MspR9I	CCNGG	3 cut(s)	239, 295, 354
MvaI	CCWGG	3 cut(s)	239, 295, 354
MwoI	GCNNNNNNNGC	2 cut(s)	248, 320
NdeII	GATC	7 cut(s)	28, 52, 154, 393, 555, 712, 793
NlaIII	CATG	3 cut(s)	39, 632, 835
NmuCI	GTSAC	1 cut(s)	698
NspI	RCATGY	2 cut(s)	39, 835
PaeI	GCATGC	1 cut(s)	39
PagI	TCATGA	1 cut(s)	628
PkrI	GCNGC	1 cut(s)	41
PleI	GAGTC	1 cut(s)	793
PpsI	GAGTC	1 cut(s)	793
Psp6I	CCWGG	3 cut(s)	237, 293, 352
PspEI	GGTNACC	1 cut(s)	704
PspGI	CCWGG	3 cut(s)	237, 293, 352
PspPI	GGNCC	2 cut(s)	297, 656
RsaI	GTAC	6 cut(s)	5, 86, 133, 515, 721, 758
RsaNI	GTAC	6 cut(s)	4, 85, 132, 514, 720, 757
RseI	CAYNNNNRTG	1 cut(s)	141
SaqAI	TTAA	2 cut(s)	608, 674
SatI	GCNGC	1 cut(s)	40
Sau3AI	GATC	7 cut(s)	28, 52, 154, 393, 555, 712, 793
Sau96I	GGNCC	2 cut(s)	297, 656
SchI	GAGTC	1 cut(s)	793
ScrFI	CCNGG	3 cut(s)	239, 295, 354
SduI	GDGCHC	2 cut(s)	316, 642
SetI	ASST	8 cut(s)	52, 222, 358, 408, 418, 491, 700, 793
SfaNI	GCATC	4 cut(s)	7, 139, 238, 523
SfcI	CTRYAG	1 cut(s)	117
SinI	GGWCC	2 cut(s)	297, 656
SmiMI	CAYNNNNRTG	1 cut(s)	141
SmlI	CTYRAG	1 cut(s)	772
SmoI	CTYRAG	1 cut(s)	772
SphI	GCATGC	1 cut(s)	39
Sse9I	AATT	4 cut(s)	467, 482, 609, 632
SsiI	CCGC	4 cut(s)	39, 107, 242, 679
SspI	AATATT	1 cut(s)	79
StyD4I	CCNGG	3 cut(s)	237, 293, 352
StyI	CCWWGG	1 cut(s)	324
TaaI	ACNGT	2 cut(s)	177, 704
TaiI	ACGT	1 cut(s)	491
TaqI	TCGA	1 cut(s)	223
TasI	AATT	4 cut(s)	467, 482, 609, 632
TatI	WGTACW	4 cut(s)	3, 513, 719, 756
TauI	GCSGC	1 cut(s)	42
Tru1I	TTAA	2 cut(s)	608, 674
Tru9I	TTAA	2 cut(s)	608, 674
TscAI	CASTG	1 cut(s)	307
TseFI	GTSAC	1 cut(s)	698
Tsp45I	GTSAC	1 cut(s)	698
TspDTI	ATGAA	7 cut(s)	355, 512, 557, 645, 665, 750, 837
TspGWI	ACGGA	1 cut(s)	331
TspRI	CASTG	1 cut(s)	307
VneI	GTGCAC	1 cut(s)	638
VpaK11BI	GGWCC	2 cut(s)	297, 656
XapI	RAATTY	3 cut(s)	467, 482, 632
XceI	RCATGY	2 cut(s)	39, 835
XmiI	GTMKAC	1 cut(s)	444

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.