Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0004405

Physical Location & Seq

Genomic Coordinates Forward (+)

27070785 .. 27078863

Gene Structure 8079 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG129900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

ATGAAACGAGGCTACTCAGAATCGTCCTCAATCTCTGTTGGGCCTCCTCAATCGAGGTTCAAAGCCAACCCAGAAGAGGATTCAAATTTCTTGGAAGATGAGAGCACAAAGATTTTTGCACGAAAAGTGGCCGATCATTATAGTGCAAGGACAAATCAAACTCTGGAAGAACGAGAAGCTAGTCCGATCATCCATTTAAAAAAACTTAACAACTGGATTAAGAGTGTCTTAATTCAGCTCTATGCTCGCCGAGGAGATGCTGTTCTTGATCTTGCATGCGGCAAGGGAGGTGATCTCATCAAATGGGACAAGGCCAAAATTGGGTACTATGTTGGTATTGATATTGCTGAAGGCTCTATAGAAGATTGTCGTACCCGTTACAATGGTGATGCTGATCATCATCAACGCCGTAAAAAGTTTACATTTCCTGCACGCCTTATCTGTGGAGACTGCTATGAGGTTCGACTGGATAAAGCCCTAGCAGATGATGCACCCTTTGATATTTGCAGTTGCCAGTTTGCCTTGCATTATTCCTGGTCCACTGAAGCACGAGCACGGAGAGCCTTGGCCAATGTTTCAGCCTTACTTCGCCCAGGCGGAACTTTCATTGGAACAATGCCGGACGCTAATGTGATTATCAAAAAGCTGAGAGAAGCTGAAGGCTCATTCTTTGGAAATAGTGTCTACTGGATACGATTCGATGAAGAATTTTCGGAAAAGAAATTTAAGTCTTCAAGCCCCTTTGGTATCAAGTACAAGTTTCATCTTGAGGATGCTGTTGATTGCCCTGAATGGATCGTCCCTTTTCATGTATTCAAATCATTGGTAGAAGAGTATGATATGGAGTTAATTTTTGTGAAGAACTCTCATGAATTTGTGCACGAGTATATGAAAAGACCCGAGTACGTAGAGTTAATGCGGAGGCTTGGTGCATTAGGTGATGGTAACCAAGATCAGAGTACACTATCACAAGATGAATGGGAAGTAGCCTATTTGTACTTGTCATTTGTTTTGAGGAAGCGGGGCCAACCTGATCGGACTCAACCAAATGGTAGAAGAGATAAAGGGAAGATGCATATATCAAAAGAGGACATGTTGAACATTGAACATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001510 GO:0003674 GO:0003824 GO:0004482 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005845 GO:0006139 GO:0006370 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008173 GO:0008174 GO:0008757 GO:0009451 GO:0009452 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016556 GO:0016740 GO:0016741 GO:0032259 GO:0032991 GO:0034518 GO:0034641 GO:0036260 GO:0036265 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0080009 GO:0090304 GO:0106005 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

Pox_MCEL

Protein Analysis

370

Amino Acids

42.64

Weight (kDa)

6.62

Isoelectric Point (pI)

51.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
mRNA_G-N7_MeTrfase	PF03291	32 - 341	1.9e-129	mRNA (guanine-N(7))-methyltransferase domain
Methyltransf_31	PF13847	84 - 209	8.7e-09	Methyltransferase domain
Methyltransf_25	PF13649	88 - 200	1.6e-10	Methyltransferase domain
Methyltransf_12	PF08242	89 - 202	9.2e-10	Methyltransferase domain
Methyltransf_11	PF08241	89 - 203	2.6e-09	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004405)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20650 AT3G20650 AT3G20650
fragaria_vesca	FvH4_3g21511 FvH4_3g21511 FvH4_3g21511 FvH4_6g24821
malus_domestica	MD03G1215400.v1.1 MD11G1013800.v1.1 MD11G1230000.v1.1
prunus_persica	Prupe.4G197400_v2.0.a1
pyrus_communis	pycom03g16380 pycom11g20380
rosa_chinensis	RchiOBHm_Chr1g0332461 RchiOBHm_Chr5g0036961
rosa_laevigata	RLG00000019767 RLG00000029593 RLG00000029668 RLG00000033739
rosa_multiflora	Rmu_sc0000574.1_g000061 Rmu_sc0006147.1_g000007 Rmu_sc0007663.1_g000020 Rmu_sc0024051.1_g000002
rosa_roxburghii	Rroxscaffold_1G00043990 Rroxscaffold_2G00105880
rosa_rugosa	Rorug01G0101300 Rorug05G0159400
rosa_samantha	Rh1DG129900 Rh5DG261500
rosa_wichuraiana	Rw1G010160 Rw1G015570 Rw5G023160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	684
AciI	CCGC	4 cut(s)	279, 597, 919, 1021
AclWI	GGATC	1 cut(s)	803
AcoI	YGGCCR	2 cut(s)	129, 567
AcsI	RAATTY	4 cut(s)	85, 707, 722, 872
AcuI	CTGAAG	3 cut(s)	369, 564, 678
AfaI	GTAC	6 cut(s)	326, 373, 755, 905, 961, 998
AfiI	CCNNNNNNNGG	2 cut(s)	76, 321
AflIII	ACRYGT	1 cut(s)	1092
AgsI	TTSAA	6 cut(s)	61, 84, 735, 817, 1099, 1106
AjnI	CCWGG	2 cut(s)	533, 592
AloI	GAACNNNNNNTCC	2 cut(s)	246, 278
AluBI	AGCT	4 cut(s)	179, 238, 646, 656
AluI	AGCT	4 cut(s)	179, 238, 646, 656
Alw21I	GWGCWC	3 cut(s)	107, 556, 882
Alw26I	GTCTC	1 cut(s)	441
Alw44I	GTGCAC	1 cut(s)	878
AlwI	GGATC	1 cut(s)	803
Ama87I	CYCGRG	1 cut(s)	899
AoxI	GGCC	5 cut(s)	41, 129, 312, 567, 1024
ApaLI	GTGCAC	1 cut(s)	878
ApoI	RAATTY	4 cut(s)	85, 707, 722, 872
AspS9I	GGNCC	3 cut(s)	41, 537, 1024
AsuHPI	GGTGA	3 cut(s)	302, 398, 950
AvaI	CYCGRG	1 cut(s)	899
AvaII	GGWCC	1 cut(s)	537
BaeGI	GKGCMC	1 cut(s)	882
BalI	TGGCCA	1 cut(s)	569
BauI	CACGAG	2 cut(s)	549, 881
BbsI	GAAGAC	1 cut(s)	723
Bbv12I	GWGCWC	3 cut(s)	107, 556, 882
BccI	CCATC	1 cut(s)	935
BceAI	ACGGC	1 cut(s)	393
BciT130I	CCWGG	2 cut(s)	535, 594
BciVI	GTATCC	1 cut(s)	684
BclI	TGATCA	1 cut(s)	394
BcoDI	GTCTC	1 cut(s)	441
BfaI	CTAG	2 cut(s)	180, 479
BfmI	CTRYAG	1 cut(s)	357
BfuI	GTATCC	1 cut(s)	684
BisI	GCNGC	1 cut(s)	280
BlsI	GCNGC	1 cut(s)	281
Bme1390I	CCNGG	2 cut(s)	535, 594
Bme18I	GGWCC	1 cut(s)	537
BmeT110I	CYCGRG	1 cut(s)	899
BmgT120I	GGNCC	3 cut(s)	41, 537, 1024
BmiI	GGNNCC	1 cut(s)	1025
BmrFI	CCNGG	2 cut(s)	535, 594
BmsI	GCATC	5 cut(s)	247, 379, 478, 763, 1062
BpiI	GAAGAC	1 cut(s)	723
BplI	GAGNNNNNCTC	2 cut(s)	279, 311
BpuEI	CTTGAG	1 cut(s)	788
BsaAI	YACGTR	1 cut(s)	907
BsaBI	GATNNNNATC	2 cut(s)	393, 399
BsaJI	CCNNGG	3 cut(s)	250, 564, 592
BsaXI	ACNNNNNCTCC	4 cut(s)	246, 276, 913, 943
Bsc4I	CCNNNNNNNGG	2 cut(s)	76, 321
Bse1I	ACTGG	4 cut(s)	218, 471, 514, 692
Bse8I	GATNNNNATC	2 cut(s)	393, 399
BseBI	CCWGG	2 cut(s)	535, 594
BseDI	CCNNGG	3 cut(s)	250, 564, 592
BseGI	GGATG	2 cut(s)	189, 778
BseJI	GATNNNNATC	2 cut(s)	393, 399
BseLI	CCNNNNNNNGG	2 cut(s)	76, 321
BseMII	CTCAG	2 cut(s)	30, 638
BseNI	ACTGG	4 cut(s)	218, 471, 514, 692
BseRI	GAGGAG	2 cut(s)	36, 267
BseSI	GKGCMC	1 cut(s)	882
BsgI	GTGCAG	1 cut(s)	414
BshFI	GGCC	5 cut(s)	43, 131, 314, 569, 1026
BsiHKAI	GWGCWC	3 cut(s)	107, 556, 882
BsiHKCI	CYCGRG	1 cut(s)	899
BsiSI	CCGG	1 cut(s)	620
BslFI	GGGAC	2 cut(s)	320, 785
BslI	CCNNNNNNNGG	2 cut(s)	76, 321
BsmAI	GTCTC	1 cut(s)	441
BsmFI	GGGAC	2 cut(s)	320, 785
BsnI	GGCC	5 cut(s)	43, 131, 314, 569, 1026
BsoBI	CYCGRG	1 cut(s)	899
Bsp1286I	GDGCHC	3 cut(s)	107, 556, 882
Bsp143I	GATC	8 cut(s)	133, 186, 268, 292, 394, 795, 952, 1033
BspACI	CCGC	4 cut(s)	279, 597, 919, 1021
BspANI	GGCC	5 cut(s)	43, 131, 314, 569, 1026
BspCNI	CTCAG	2 cut(s)	29, 639
BspHI	TCATGA	1 cut(s)	868
BspLI	GGNNCC	1 cut(s)	1025
BspPI	GGATC	1 cut(s)	803
BsrI	ACTGG	4 cut(s)	218, 471, 514, 692
BssECI	CCNNGG	3 cut(s)	250, 564, 592
BssMI	GATC	8 cut(s)	133, 186, 268, 292, 394, 795, 952, 1033
BssSI	CACGAG	2 cut(s)	549, 881
BssT1I	CCWWGG	1 cut(s)	564
Bst2BI	CACGAG	2 cut(s)	549, 881
Bst2UI	CCWGG	2 cut(s)	535, 594
Bst6I	CTCTTC	3 cut(s)	69, 825, 1051
BstAPI	GCANNNNNTGC	1 cut(s)	488
BstBAI	YACGTR	1 cut(s)	907
BstC8I	GCNNGC	3 cut(s)	247, 277, 433
BstDEI	CTNAG	2 cut(s)	16, 647
BstEII	GGTNACC	1 cut(s)	944
BstF5I	GGATG	2 cut(s)	189, 778
BstKTI	GATC	8 cut(s)	136, 189, 271, 295, 397, 798, 955, 1036
BstMAI	GTCTC	1 cut(s)	441
BstMBI	GATC	8 cut(s)	133, 186, 268, 292, 394, 795, 952, 1033
BstMWI	GCNNNNNNNGC	2 cut(s)	488, 560
BstNI	CCWGG	2 cut(s)	535, 594
BstNSI	RCATGY	2 cut(s)	279, 1096
BstPI	GGTNACC	1 cut(s)	944
BstSCI	CCNGG	2 cut(s)	533, 592
BstSFI	CTRYAG	1 cut(s)	357
BstSLI	GKGCMC	1 cut(s)	882
BstSNI	TACGTA	1 cut(s)	907
BstV2I	GAAGAC	1 cut(s)	723
BsuI	GTATCC	1 cut(s)	684
BsuRI	GGCC	5 cut(s)	43, 131, 314, 569, 1026
BtsCI	GGATG	2 cut(s)	189, 778
BtsIMutI	CAGTG	1 cut(s)	540
Cac8I	GCNNGC	3 cut(s)	247, 277, 433
CciI	TCATGA	1 cut(s)	868
Cfr13I	GGNCC	3 cut(s)	41, 537, 1024
CseI	GACGC	1 cut(s)	632
Csp6I	GTAC	6 cut(s)	325, 372, 754, 904, 960, 997
CviAII	CATG	4 cut(s)	276, 809, 869, 1093
CviQI	GTAC	6 cut(s)	325, 372, 754, 904, 960, 997
DdeI	CTNAG	2 cut(s)	16, 647
DpnI	GATC	8 cut(s)	135, 188, 270, 294, 396, 797, 954, 1035
DpnII	GATC	8 cut(s)	133, 186, 268, 292, 394, 795, 952, 1033
DraI	TTTAAA	1 cut(s)	198
EaeI	YGGCCR	2 cut(s)	129, 567
Eam1104I	CTCTTC	3 cut(s)	69, 825, 1051
EarI	CTCTTC	3 cut(s)	69, 825, 1051
EciI	GGCGGA	1 cut(s)	612
Eco105I	TACGTA	1 cut(s)	907
Eco130I	CCWWGG	1 cut(s)	564
Eco47I	GGWCC	1 cut(s)	537
Eco57I	CTGAAG	3 cut(s)	369, 564, 678
Eco88I	CYCGRG	1 cut(s)	899
Eco91I	GGTNACC	1 cut(s)	944
EcoO65I	GGTNACC	1 cut(s)	944
EcoRII	CCWGG	2 cut(s)	533, 592
EcoT14I	CCWWGG	1 cut(s)	564
EcoT22I	ATGCAT	1 cut(s)	1077
ErhI	CCWWGG	1 cut(s)	564
FaeI	CATG	4 cut(s)	279, 812, 872, 1096
FalI	AAGNNNNNCTT	2 cut(s)	212, 244
FaqI	GGGAC	2 cut(s)	320, 785
FatI	CATG	4 cut(s)	275, 808, 868, 1092
FauI	CCCGC	1 cut(s)	1014
FbaI	TGATCA	1 cut(s)	394
FblI	GTMKAC	1 cut(s)	684
Fnu4HI	GCNGC	1 cut(s)	280
FokI	GGATG	2 cut(s)	176, 785
Fsp4HI	GCNGC	1 cut(s)	280
FspBI	CTAG	2 cut(s)	180, 479
GluI	GCNGC	1 cut(s)	280
HaeIII	GGCC	5 cut(s)	43, 131, 314, 569, 1026
HapII	CCGG	1 cut(s)	620
HgaI	GACGC	1 cut(s)	632
Hin1II	CATG	4 cut(s)	279, 812, 872, 1096
HinfI	GANTC	4 cut(s)	20, 80, 696, 1039
HpaII	CCGG	1 cut(s)	620
HphI	GGTGA	3 cut(s)	302, 398, 950
Hpy166II	GTNNAC	5 cut(s)	420, 540, 685, 880, 962
Hpy188I	TCNGA	5 cut(s)	19, 186, 715, 957, 1038
Hpy188III	TCNNGA	4 cut(s)	164, 266, 767, 869
Hpy8I	GTNNAC	5 cut(s)	420, 540, 685, 880, 962
HpyAV	CCTTC	2 cut(s)	344, 653
HpyCH4IV	ACGT	1 cut(s)	906
HpyF10VI	GCNNNNNNNGC	2 cut(s)	488, 560
HpyF3I	CTNAG	2 cut(s)	16, 647
HpySE526I	ACGT	1 cut(s)	906
Hsp92II	CATG	4 cut(s)	279, 812, 872, 1096
Ksp22I	TGATCA	1 cut(s)	394
Kzo9I	GATC	8 cut(s)	133, 186, 268, 292, 394, 795, 952, 1033
LweI	GCATC	5 cut(s)	247, 379, 478, 763, 1062
MaeI	CTAG	2 cut(s)	180, 479
MaeII	ACGT	1 cut(s)	906
MaeIII	GTNAC	2 cut(s)	377, 944
MalI	GATC	8 cut(s)	135, 188, 270, 294, 396, 797, 954, 1035
MboI	GATC	8 cut(s)	133, 186, 268, 292, 394, 795, 952, 1033
MhlI	GDGCHC	3 cut(s)	107, 556, 882
MlsI	TGGCCA	1 cut(s)	569
MluCI	AATT	7 cut(s)	85, 231, 318, 707, 722, 849, 872
MluNI	TGGCCA	1 cut(s)	569
MlyI	GAGTC	1 cut(s)	1033
Mox20I	TGGCCA	1 cut(s)	569
Mph1103I	ATGCAT	1 cut(s)	1077
MscI	TGGCCA	1 cut(s)	569
MseI	TTAA	7 cut(s)	197, 207, 219, 230, 726, 848, 914
MslI	CAYNNNNRTG	1 cut(s)	141
Msp20I	TGGCCA	1 cut(s)	569
MspI	CCGG	1 cut(s)	620
MspR9I	CCNGG	2 cut(s)	535, 594
MvaI	CCWGG	2 cut(s)	535, 594
MwoI	GCNNNNNNNGC	2 cut(s)	488, 560
NdeII	GATC	8 cut(s)	133, 186, 268, 292, 394, 795, 952, 1033
NlaIII	CATG	4 cut(s)	279, 812, 872, 1096
NlaIV	GGNNCC	1 cut(s)	1025
NmeAIII	GCCGAG	1 cut(s)	275
NsiI	ATGCAT	1 cut(s)	1077
NspI	RCATGY	2 cut(s)	279, 1096
PaeI	GCATGC	1 cut(s)	279
PagI	TCATGA	1 cut(s)	868
PciI	ACATGT	1 cut(s)	1092
PfeI	GAWTC	3 cut(s)	20, 80, 696
PkrI	GCNGC	1 cut(s)	281
PleI	GAGTC	1 cut(s)	1033
PpsI	GAGTC	1 cut(s)	1033
Ppu21I	YACGTR	1 cut(s)	907
PscI	ACATGT	1 cut(s)	1092
Psp6I	CCWGG	2 cut(s)	533, 592
PspEI	GGTNACC	1 cut(s)	944
PspGI	CCWGG	2 cut(s)	533, 592
PspN4I	GGNNCC	1 cut(s)	1025
PspPI	GGNCC	3 cut(s)	41, 537, 1024
RsaI	GTAC	6 cut(s)	326, 373, 755, 905, 961, 998
RsaNI	GTAC	6 cut(s)	325, 372, 754, 904, 960, 997
RseI	CAYNNNNRTG	1 cut(s)	141
SaqAI	TTAA	7 cut(s)	197, 207, 219, 230, 726, 848, 914
SatI	GCNGC	1 cut(s)	280
Sau3AI	GATC	8 cut(s)	133, 186, 268, 292, 394, 795, 952, 1033
Sau96I	GGNCC	3 cut(s)	41, 537, 1024
SchI	GAGTC	1 cut(s)	1033
ScrFI	CCNGG	2 cut(s)	535, 594
SduI	GDGCHC	3 cut(s)	107, 556, 882
SfaNI	GCATC	5 cut(s)	247, 379, 478, 763, 1062
SfcI	CTRYAG	1 cut(s)	357
SinI	GGWCC	1 cut(s)	537
SmiMI	CAYNNNNRTG	1 cut(s)	141
SmlI	CTYRAG	1 cut(s)	767
SmoI	CTYRAG	1 cut(s)	767
SnaBI	TACGTA	1 cut(s)	907
SphI	GCATGC	1 cut(s)	279
Sse9I	AATT	7 cut(s)	85, 231, 318, 707, 722, 849, 872
SsiI	CCGC	4 cut(s)	279, 597, 919, 1021
SspMI	CTAG	2 cut(s)	180, 479
StyD4I	CCNGG	2 cut(s)	533, 592
StyI	CCWWGG	1 cut(s)	564
TaiI	ACGT	1 cut(s)	909
TaqI	TCGA	3 cut(s)	53, 463, 699
TasI	AATT	7 cut(s)	85, 231, 318, 707, 722, 849, 872
TatI	WGTACW	3 cut(s)	753, 959, 996
TauI	GCSGC	1 cut(s)	282
TfiI	GAWTC	3 cut(s)	20, 80, 696
Tru1I	TTAA	7 cut(s)	197, 207, 219, 230, 726, 848, 914
Tru9I	TTAA	7 cut(s)	197, 207, 219, 230, 726, 848, 914
TscAI	CASTG	1 cut(s)	547
TspDTI	ATGAA	8 cut(s)	17, 595, 717, 752, 797, 885, 905, 990
TspGWI	ACGGA	1 cut(s)	571
TspRI	CASTG	1 cut(s)	547
VneI	GTGCAC	1 cut(s)	878
VpaK11BI	GGWCC	1 cut(s)	537
XapI	RAATTY	4 cut(s)	85, 707, 722, 872
XceI	RCATGY	2 cut(s)	279, 1096
XmiI	GTMKAC	1 cut(s)	684
XspI	CTAG	2 cut(s)	180, 479
Zsp2I	ATGCAT	1 cut(s)	1077

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.