Rorug05G0159400
ERF Family

Belongs to the class I-like SAM-binding methyltransferase superfamily. mRNA cap 0 methyltransferase family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Forward (+)
14848669 .. 14863532
14864 bp
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UTR
Exon/CDS
Intron
Rorug05G0159400.1

Sequence Viewer

Length: 561 bp
ATGCGCGGACAAACGTTGCGGAATTTTGACATCCAAATATTGAGAGATGAAGCTGTGTCAAGACTTCATCAGCTTGGAAAGGTAAGTGATAGTGATGGTTATCTTGAGAGGATATTCTTGAGACCAGCAACTGTGAGGGCTGGAAATCTTATCCGCAAATGGATGGAGGATGCTGGTGGGTTGATTGCTTGGGAAATGTACATGGTTGAGTTGAGGATTTTGAGTATCAATGGAAAATTGGGAGAACTAAAGCGGCCGGCTGAGATTCACATTGAACAAGGGCCTGTACTGGAATGGGTTGGTTTTCCTCTAGGTGTTGTTAAAGGCATAGCTGGACAGACAAGACTAAAGGTATCATTAGTGTCTCAGCTTTTCATAGTCATTTGCGATTCTGAGCTGACTTCGAAGCTGAAGTCTGCGGCTTATCTTGGGCTCAAGAGAATGACAGGTTCTGTTCAGGATGAAGTACCTGTATTAATGAGTGGAGCAGGACATGATGCAATGGCTCTGTCTCATTTAACTAAGTGGGTATGCTTTTTGTCCGCTGTCGAGGAGGCATAA

Protein Analysis

186

Amino Acids

20.62

Weight (kDa)

7.8

Isoelectric Point (pI)

42.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 6
AciI CCGC 6 cut(s) 6, 19, 154, 253, 419, 543
AclI AACGTT 1 cut(s) 14
AcoI YGGCCR 1 cut(s) 254
AcsI RAATTY 1 cut(s) 22
AcuI CTGAAG 1 cut(s) 431
AfaI GTAC 3 cut(s) 200, 288, 468
AgsI TTSAA 1 cut(s) 275
AluBI AGCT 6 cut(s) 53, 73, 332, 370, 397, 409
AluI AGCT 6 cut(s) 53, 73, 332, 370, 397, 409
Alw26I GTCTC 3 cut(s) 115, 369, 516
AlwNI CAGNNNCTG 2 cut(s) 131, 452
AoxI GGCC 2 cut(s) 254, 281
ApoI RAATTY 1 cut(s) 22
ArsI GACNNNNNNTTYG 2 cut(s) 398, 430
AseI ATTAAT 1 cut(s) 476
AspLEI GCGC 1 cut(s) 6
AspS9I GGNCC 1 cut(s) 281
AsuII TTCGAA 1 cut(s) 404
BanII GRGCYC 1 cut(s) 435
BccI CCATC 2 cut(s) 89, 157
BcoDI GTCTC 3 cut(s) 115, 369, 516
BfaI CTAG 1 cut(s) 311
BisI GCNGC 2 cut(s) 254, 420
BlsI GCNGC 2 cut(s) 255, 421
BmgT120I GGNCC 1 cut(s) 281
BmsI GCATC 2 cut(s) 160, 487
Bpu14I TTCGAA 1 cut(s) 404
BpuEI CTTGAG 3 cut(s) 125, 139, 419
BsaBI GATNNNNATC 1 cut(s) 99
BsaI GGTCTC 1 cut(s) 115
Bse118I RCCGGY 1 cut(s) 256
Bse1I ACTGG 1 cut(s) 294
Bse3DI GCAATG 1 cut(s) 507
Bse8I GATNNNNATC 1 cut(s) 99
BseGI GGATG 4 cut(s) 30, 168, 175, 466
BseJI GATNNNNATC 1 cut(s) 99
BseMI GCAATG 1 cut(s) 507
BseMII CTCAG 3 cut(s) 252, 380, 384
BseNI ACTGG 1 cut(s) 294
BseX3I CGGCCG 1 cut(s) 254
Bsh1236I CGCG 1 cut(s) 6
Bsh1285I CGRYCG 1 cut(s) 257
BshFI GGCC 2 cut(s) 256, 283
BsiEI CGRYCG 1 cut(s) 257
BsiSI CCGG 1 cut(s) 257
BsmAI GTCTC 3 cut(s) 115, 369, 516
BsnI GGCC 2 cut(s) 256, 283
Bso31I GGTCTC 1 cut(s) 115
Bsp119I TTCGAA 1 cut(s) 404
Bsp1286I GDGCHC 1 cut(s) 435
Bsp1407I TGTACA 1 cut(s) 198
BspACI CCGC 6 cut(s) 6, 19, 154, 253, 419, 543
BspANI GGCC 2 cut(s) 256, 283
BspCNI CTCAG 3 cut(s) 253, 379, 385
BspFNI CGCG 1 cut(s) 6
BspT104I TTCGAA 1 cut(s) 404
BspTNI GGTCTC 1 cut(s) 115
BsrDI GCAATG 1 cut(s) 507
BsrFI RCCGGY 1 cut(s) 256
BsrGI TGTACA 1 cut(s) 198
BsrI ACTGG 1 cut(s) 294
BssAI RCCGGY 1 cut(s) 256
Bst4CI ACNGT 1 cut(s) 133
BstAUI TGTACA 1 cut(s) 198
BstBI TTCGAA 1 cut(s) 404
BstC8I GCNNGC 1 cut(s) 258
BstDEI CTNAG 4 cut(s) 261, 366, 393, 522
BstF5I GGATG 4 cut(s) 30, 168, 175, 466
BstFNI CGCG 1 cut(s) 6
BstHHI GCGC 1 cut(s) 6
BstMAI GTCTC 3 cut(s) 115, 369, 516
BstMCI CGRYCG 1 cut(s) 257
BstUI CGCG 1 cut(s) 6
BstZI CGGCCG 1 cut(s) 254
BsuRI GGCC 2 cut(s) 256, 283
BtsCI GGATG 4 cut(s) 30, 168, 175, 466
Cac8I GCNNGC 1 cut(s) 258
CaiI CAGNNNCTG 2 cut(s) 131, 452
CfoI GCGC 1 cut(s) 6
Cfr10I RCCGGY 1 cut(s) 256
Cfr13I GGNCC 1 cut(s) 281
Csp6I GTAC 3 cut(s) 199, 287, 467
CviAII CATG 2 cut(s) 202, 494
CviQI GTAC 3 cut(s) 199, 287, 467
DdeI CTNAG 4 cut(s) 261, 366, 393, 522
EaeI YGGCCR 1 cut(s) 254
EagI CGGCCG 1 cut(s) 254
EclXI CGGCCG 1 cut(s) 254
Eco24I GRGCYC 1 cut(s) 435
Eco31I GGTCTC 1 cut(s) 115
Eco52I CGGCCG 1 cut(s) 254
Eco57I CTGAAG 1 cut(s) 431
EcoO109I RGGNCCY 1 cut(s) 281
EcoT38I GRGCYC 1 cut(s) 435
FaeI CATG 2 cut(s) 205, 497
FaiI YATR 6 cut(s) 203, 329, 377, 495, 532, 559
FatI CATG 2 cut(s) 201, 493
Fnu4HI GCNGC 2 cut(s) 254, 420
FokI GGATG 4 cut(s) 17, 175, 182, 473
FriOI GRGCYC 1 cut(s) 435
Fsp4HI GCNGC 2 cut(s) 254, 420
FspBI CTAG 1 cut(s) 311
GlaI GCGC 1 cut(s) 5
GluI GCNGC 2 cut(s) 254, 420
HaeIII GGCC 2 cut(s) 256, 283
HapII CCGG 1 cut(s) 257
HhaI GCGC 1 cut(s) 6
Hin1II CATG 2 cut(s) 205, 497
Hin6I GCGC 1 cut(s) 4
HinP1I GCGC 1 cut(s) 4
HinfI GANTC 2 cut(s) 265, 389
HpaII CCGG 1 cut(s) 257
Hpy188I TCNGA 1 cut(s) 394
Hpy188III TCNNGA 5 cut(s) 60, 104, 118, 436, 458
HpyCH4III ACNGT 1 cut(s) 133
HpyCH4IV ACGT 1 cut(s) 14
HpyCH4V TGCA 1 cut(s) 500
HpyF3I CTNAG 4 cut(s) 261, 366, 393, 522
HpySE526I ACGT 1 cut(s) 14
Hsp92II CATG 2 cut(s) 205, 497
HspAI GCGC 1 cut(s) 4
KroI GCCGGC 1 cut(s) 256
KroNI GCCGGC 1 cut(s) 258
LmnI GCTCC 1 cut(s) 485
LweI GCATC 2 cut(s) 160, 487
MaeI CTAG 1 cut(s) 311
MaeII ACGT 1 cut(s) 14
MhlI GDGCHC 1 cut(s) 435
MluCI AATT 2 cut(s) 22, 236
MnlI CCTC 7 cut(s) 102, 129, 160, 207, 318, 544, 547
MroNI GCCGGC 1 cut(s) 256
MseI TTAA 3 cut(s) 321, 476, 518
MspA1I CMGCKG 1 cut(s) 545
MspI CCGG 1 cut(s) 257
MvnI CGCG 1 cut(s) 6
NaeI GCCGGC 1 cut(s) 258
NgoMIV GCCGGC 1 cut(s) 256
NlaIII CATG 2 cut(s) 205, 497
NspV TTCGAA 1 cut(s) 404
PdiI GCCGGC 1 cut(s) 258
PfeI GAWTC 2 cut(s) 265, 389
PkrI GCNGC 2 cut(s) 255, 421
PshBI ATTAAT 1 cut(s) 476
Psp1406I AACGTT 1 cut(s) 14
PspPI GGNCC 1 cut(s) 281
PstNI CAGNNNCTG 2 cut(s) 131, 452
RsaI GTAC 3 cut(s) 200, 288, 468
RsaNI GTAC 3 cut(s) 199, 287, 467
SaqAI TTAA 3 cut(s) 321, 476, 518
SatI GCNGC 2 cut(s) 254, 420
Sau96I GGNCC 1 cut(s) 281
SduI GDGCHC 1 cut(s) 435
SfaNI GCATC 2 cut(s) 160, 487
SfuI TTCGAA 1 cut(s) 404
SmlI CTYRAG 3 cut(s) 104, 118, 434
SmoI CTYRAG 3 cut(s) 104, 118, 434
Sse9I AATT 2 cut(s) 22, 236
SsiI CCGC 6 cut(s) 6, 19, 154, 253, 419, 543
SspI AATATT 1 cut(s) 39
SspMI CTAG 1 cut(s) 311
TaaI ACNGT 1 cut(s) 133
TaiI ACGT 1 cut(s) 17
TaqI TCGA 2 cut(s) 404, 549
TasI AATT 2 cut(s) 22, 236
TatI WGTACW 2 cut(s) 198, 286
TauI GCSGC 2 cut(s) 256, 422
TfiI GAWTC 2 cut(s) 265, 389
Tru1I TTAA 3 cut(s) 321, 476, 518
Tru9I TTAA 3 cut(s) 321, 476, 518
TspDTI ATGAA 4 cut(s) 56, 63, 364, 477
VspI ATTAAT 1 cut(s) 476
XapI RAATTY 1 cut(s) 22
XspI CTAG 1 cut(s) 311
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.