Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0004405

Physical Location & Seq

Genomic Coordinates Forward (+)

17550645 .. 17554002

Gene Structure 3358 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g16380.12

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGAAACGAGGGTACTCGGAATCGTCGTCCACCTCCCTCGGGCCTCCCCAGTCGAGATTCAAACACAACCCAGAAGGTGATGCCGAATTCTTGGAGGATGAAACCACAAAAAAATTTGCACGTAAATTGGTTATAGTTCCTTCTCTTGTTGAGCAGATTAAGAGTGTTTTAATCCAGCTATATGCTCGCAAAGGAGATGCTGTTCTGGATCTTGCATGTGGCAAGGGGGGTGATCTCATCAAATGGGACAAGGCAAAAATTGGGTATTATGTTGGAATTGATATCGCTGAAGGCTCGATAGAAGATTGTCGTACTCGTTACAATGGTGATGCTGACCATCATCAGCGTCGTAAAAAGTTTACATTTCCTGCGCATCTTATATGTGGAGATTGCTATGAGGTTCGCCTGGATAAAGTCCTGGCTGATGATGCCCCCTTTGATGTTGTCAGTTGCCAGTTTGCCTTGCATTATTCCTGGTCTACTGAGGCACGTGCACGGCGAGCCTTGGCTAATGTATCGGCTTTACTGCGCCCTGGCGGTACTTTTATTGGAACAATGCCTGATGCAAATGTGATTATCAAAAAGCTCAGAGAAGCTGAAGGATTGGTCTTTGGTAATAGCGTCTACTGGATACGCTTTGATGAAGACTTTTCTGAAAAGAAATTCAAGTCTTCGAGCCCCTTTGGTATCAAGTACAAGTTTCACCTGGAGGATGCTGTTGATTGCCCGGAATGGATTGTCCCATTTCATGTTTTCAAATCGTTGGTCGAAGAGTACGATATGGAGCTAGTTTTGGTGAAGAACAACCACGAATTTGTGCATGAGAATATGAAAAAACCAGAATTTGTGGAGTTAATGCGGAGGCTTGGTGCATTGGGTGATGGTAACCAAGATCAAAGTACACTATCGAAAGATGAATGGGAAGTAGCTCATCTCTATTTGGCATTTGTCTTGAGGAAGGAGAAGCCTGCTTGGCGGTATGGGGAAAGCGAAGAGCTCGACTCCCCGCACCGTTCTACTGGCTACGATTACAAGTGGATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001510 GO:0003674 GO:0003824 GO:0004482 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005845 GO:0006139 GO:0006370 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008173 GO:0008174 GO:0008757 GO:0009451 GO:0009452 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016556 GO:0016740 GO:0016741 GO:0032259 GO:0032991 GO:0034518 GO:0034641 GO:0036260 GO:0036265 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0080009 GO:0090304 GO:0106005 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

Pox_MCEL

Protein Analysis

348

Amino Acids

39.77

Weight (kDa)

6.04

Isoelectric Point (pI)

42.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004405)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20650 AT3G20650 AT3G20650
fragaria_vesca	FvH4_3g21511 FvH4_3g21511 FvH4_3g21511 FvH4_6g24821
malus_domestica	MD03G1215400.v1.1 MD11G1013800.v1.1 MD11G1230000.v1.1
prunus_persica	Prupe.4G197400_v2.0.a1
pyrus_communis	pycom03g16380 pycom11g20380
rosa_chinensis	RchiOBHm_Chr1g0332461 RchiOBHm_Chr5g0036961
rosa_laevigata	RLG00000019767 RLG00000029593 RLG00000029668 RLG00000033739
rosa_multiflora	Rmu_sc0000574.1_g000061 Rmu_sc0006147.1_g000007 Rmu_sc0007663.1_g000020 Rmu_sc0024051.1_g000002
rosa_roxburghii	Rroxscaffold_1G00043990 Rroxscaffold_2G00105880
rosa_rugosa	Rorug01G0101300 Rorug05G0159400
rosa_samantha	Rh1DG129900 Rh5DG261500
rosa_wichuraiana	Rw1G010160 Rw1G015570 Rw5G023160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	372
AccI	GTMKAC	2 cut(s)	479, 624
AciI	CCGC	4 cut(s)	537, 859, 976, 1007
AclWI	GGATC	1 cut(s)	216
AcsI	RAATTY	5 cut(s)	86, 113, 662, 812, 842
AcuI	CTGAAG	2 cut(s)	309, 618
AcvI	CACGTG	1 cut(s)	491
AfaI	GTAC	6 cut(s)	14, 313, 541, 695, 776, 901
AfiI	CCNNNNNNNGG	1 cut(s)	39
AgsI	TTSAA	3 cut(s)	61, 667, 757
AjnI	CCWGG	5 cut(s)	405, 417, 473, 532, 705
AloI	GAACNNNNNNTCC	2 cut(s)	186, 218
AluBI	AGCT	6 cut(s)	178, 586, 596, 787, 929, 997
AluI	AGCT	6 cut(s)	178, 586, 596, 787, 929, 997
Alw21I	GWGCWC	2 cut(s)	496, 999
Alw44I	GTGCAC	1 cut(s)	492
AlwI	GGATC	1 cut(s)	216
Ama87I	CYCGRG	1 cut(s)	38
AoxI	GGCC	1 cut(s)	41
ApaLI	GTGCAC	1 cut(s)	492
ApoI	RAATTY	5 cut(s)	86, 113, 662, 812, 842
ArsI	GACNNNNNNTTYG	2 cut(s)	750, 782
AspLEI	GCGC	2 cut(s)	373, 531
AspS9I	GGNCC	1 cut(s)	41
AsuC2I	CCSGG	1 cut(s)	728
AsuHPI	GGTGA	6 cut(s)	89, 242, 338, 695, 808, 890
AvaI	CYCGRG	1 cut(s)	38
BaeGI	GKGCMC	1 cut(s)	496
BanII	GRGCYC	2 cut(s)	680, 999
BbrPI	CACGTG	1 cut(s)	491
BbsI	GAAGAC	2 cut(s)	651, 663
Bbv12I	GWGCWC	2 cut(s)	496, 999
BccI	CCATC	2 cut(s)	345, 875
BceAI	ACGGC	1 cut(s)	512
BciT130I	CCWGG	5 cut(s)	407, 419, 475, 534, 707
BciVI	GTATCC	1 cut(s)	624
BcnI	CCSGG	1 cut(s)	728
BfaI	CTAG	1 cut(s)	788
BfuI	GTATCC	1 cut(s)	624
BglI	GCCNNNNNGGC	1 cut(s)	973
Bme1390I	CCNGG	6 cut(s)	407, 419, 475, 534, 707, 728
BmeT110I	CYCGRG	1 cut(s)	38
BmgT120I	GGNCC	1 cut(s)	41
BmrFI	CCNGG	6 cut(s)	407, 419, 475, 534, 707, 728
BmrI	ACTGGG	1 cut(s)	43
BmsI	GCATC	7 cut(s)	70, 187, 319, 382, 418, 553, 703
BmuI	ACTGGG	1 cut(s)	43
BpiI	GAAGAC	2 cut(s)	651, 663
BplI	GAGNNNNNCTC	2 cut(s)	986, 1018
BpmI	CTGGAG	1 cut(s)	728
BpuEI	CTTGAG	1 cut(s)	973
BpuMI	CCSGG	1 cut(s)	728
BsaAI	YACGTR	2 cut(s)	122, 491
BsaJI	CCNNGG	3 cut(s)	37, 504, 532
BsaXI	ACNNNNNCTCC	4 cut(s)	186, 216, 853, 883
Bsc4I	CCNNNNNNNGG	1 cut(s)	39
Bse1I	ACTGG	4 cut(s)	49, 454, 632, 1024
BseBI	CCWGG	5 cut(s)	407, 419, 475, 534, 707
BseDI	CCNNGG	3 cut(s)	37, 504, 532
BseGI	GGATG	3 cut(s)	103, 718, 1044
BseLI	CCNNNNNNNGG	1 cut(s)	39
BseMII	CTCAG	2 cut(s)	474, 601
BseNI	ACTGG	4 cut(s)	49, 454, 632, 1024
BseSI	GKGCMC	1 cut(s)	496
BshFI	GGCC	1 cut(s)	43
BsiHKAI	GWGCWC	2 cut(s)	496, 999
BsiHKCI	CYCGRG	1 cut(s)	38
BsiSI	CCGG	1 cut(s)	728
BslFI	GGGAC	2 cut(s)	260, 725
BslI	CCNNNNNNNGG	1 cut(s)	39
BsmFI	GGGAC	2 cut(s)	260, 725
BsnI	GGCC	1 cut(s)	43
BsoBI	CYCGRG	1 cut(s)	38
Bsp1286I	GDGCHC	3 cut(s)	496, 680, 999
Bsp143I	GATC	3 cut(s)	208, 232, 892
BspACI	CCGC	4 cut(s)	537, 859, 976, 1007
BspANI	GGCC	1 cut(s)	43
BspCNI	CTCAG	2 cut(s)	475, 600
BspPI	GGATC	1 cut(s)	216
BspQI	GCTCTTC	1 cut(s)	987
BsrI	ACTGG	4 cut(s)	49, 454, 632, 1024
BssECI	CCNNGG	3 cut(s)	37, 504, 532
BssMI	GATC	3 cut(s)	208, 232, 892
BssT1I	CCWWGG	1 cut(s)	504
Bst2UI	CCWGG	5 cut(s)	407, 419, 475, 534, 707
Bst4CI	ACNGT	1 cut(s)	1013
Bst6I	CTCTTC	2 cut(s)	765, 987
BstBAI	YACGTR	2 cut(s)	122, 491
BstC8I	GCNNGC	3 cut(s)	187, 501, 969
BstDEI	CTNAG	2 cut(s)	483, 587
BstEII	GGTNACC	1 cut(s)	884
BstF5I	GGATG	3 cut(s)	103, 718, 1044
BstHHI	GCGC	2 cut(s)	373, 531
BstKTI	GATC	3 cut(s)	211, 235, 895
BstMBI	GATC	3 cut(s)	208, 232, 892
BstMWI	GCNNNNNNNGC	3 cut(s)	428, 500, 973
BstNI	CCWGG	5 cut(s)	407, 419, 475, 534, 707
BstNSI	RCATGY	1 cut(s)	219
BstPI	GGTNACC	1 cut(s)	884
BstSCI	CCNGG	6 cut(s)	405, 417, 473, 532, 705, 726
BstSLI	GKGCMC	1 cut(s)	496
BstV2I	GAAGAC	2 cut(s)	651, 663
BstX2I	RGATCY	1 cut(s)	208
BstYI	RGATCY	1 cut(s)	208
BsuI	GTATCC	1 cut(s)	624
BsuRI	GGCC	1 cut(s)	43
BtsCI	GGATG	3 cut(s)	103, 718, 1044
Cac8I	GCNNGC	3 cut(s)	187, 501, 969
CfoI	GCGC	2 cut(s)	373, 531
Cfr13I	GGNCC	1 cut(s)	41
CseI	GACGC	2 cut(s)	335, 610
Csp6I	GTAC	6 cut(s)	13, 312, 540, 694, 775, 900
CviAII	CATG	3 cut(s)	216, 749, 821
CviQI	GTAC	6 cut(s)	13, 312, 540, 694, 775, 900
DdeI	CTNAG	2 cut(s)	483, 587
DpnI	GATC	3 cut(s)	210, 234, 894
DpnII	GATC	3 cut(s)	208, 232, 892
Eam1104I	CTCTTC	2 cut(s)	765, 987
EarI	CTCTTC	2 cut(s)	765, 987
Ecl136II	GAGCTC	1 cut(s)	997
Eco130I	CCWWGG	1 cut(s)	504
Eco24I	GRGCYC	2 cut(s)	680, 999
Eco32I	GATATC	1 cut(s)	283
Eco53kI	GAGCTC	1 cut(s)	997
Eco57I	CTGAAG	2 cut(s)	309, 618
Eco72I	CACGTG	1 cut(s)	491
Eco88I	CYCGRG	1 cut(s)	38
Eco91I	GGTNACC	1 cut(s)	884
EcoICRI	GAGCTC	1 cut(s)	997
EcoO65I	GGTNACC	1 cut(s)	884
EcoRI	GAATTC	1 cut(s)	86
EcoRII	CCWGG	5 cut(s)	405, 417, 473, 532, 705
EcoRV	GATATC	1 cut(s)	283
EcoT14I	CCWWGG	1 cut(s)	504
EcoT38I	GRGCYC	2 cut(s)	680, 999
ErhI	CCWWGG	1 cut(s)	504
FaeI	CATG	3 cut(s)	219, 752, 824
FaqI	GGGAC	2 cut(s)	260, 725
FatI	CATG	3 cut(s)	215, 748, 820
FauI	CCCGC	1 cut(s)	1014
FblI	GTMKAC	2 cut(s)	479, 624
FokI	GGATG	2 cut(s)	110, 725
FriOI	GRGCYC	2 cut(s)	680, 999
FspBI	CTAG	1 cut(s)	788
FspI	TGCGCA	1 cut(s)	372
GlaI	GCGC	2 cut(s)	372, 530
GsuI	CTGGAG	1 cut(s)	728
HaeIII	GGCC	1 cut(s)	43
HapII	CCGG	1 cut(s)	728
HgaI	GACGC	2 cut(s)	335, 610
HhaI	GCGC	2 cut(s)	373, 531
Hin1II	CATG	3 cut(s)	219, 752, 824
Hin6I	GCGC	2 cut(s)	371, 529
HinP1I	GCGC	2 cut(s)	371, 529
HinfI	GANTC	3 cut(s)	20, 57, 1001
HpaII	CCGG	1 cut(s)	728
HphI	GGTGA	6 cut(s)	89, 242, 338, 695, 808, 890
Hpy166II	GTNNAC	6 cut(s)	30, 360, 480, 494, 625, 902
Hpy188I	TCNGA	3 cut(s)	19, 590, 655
Hpy188III	TCNNGA	3 cut(s)	54, 206, 952
Hpy8I	GTNNAC	6 cut(s)	30, 360, 480, 494, 625, 902
Hpy99I	CGWCG	2 cut(s)	28, 351
HpyAV	CCTTC	5 cut(s)	68, 150, 284, 593, 952
HpyCH4III	ACNGT	1 cut(s)	1013
HpyCH4IV	ACGT	2 cut(s)	121, 490
HpyCH4V	TGCA	7 cut(s)	119, 215, 466, 494, 566, 820, 872
HpyF10VI	GCNNNNNNNGC	3 cut(s)	428, 500, 973
HpyF3I	CTNAG	2 cut(s)	483, 587
HpySE526I	ACGT	2 cut(s)	121, 490
Hsp92II	CATG	3 cut(s)	219, 752, 824
HspAI	GCGC	2 cut(s)	371, 529
Kzo9I	GATC	3 cut(s)	208, 232, 892
LguI	GCTCTTC	1 cut(s)	987
LmnI	GCTCC	1 cut(s)	784
LweI	GCATC	7 cut(s)	70, 187, 319, 382, 418, 553, 703
MaeI	CTAG	1 cut(s)	788
MaeII	ACGT	2 cut(s)	121, 490
MaeIII	GTNAC	2 cut(s)	317, 884
MalI	GATC	3 cut(s)	210, 234, 894
MboI	GATC	3 cut(s)	208, 232, 892
MboII	GAAGA	6 cut(s)	314, 656, 663, 782, 811, 1004
MflI	RGATCY	1 cut(s)	208
MhlI	GDGCHC	3 cut(s)	496, 680, 999
MluCI	AATT	8 cut(s)	86, 113, 125, 258, 276, 662, 812, 842
MlyI	GAGTC	1 cut(s)	995
MmeI	TCCRAC	1 cut(s)	253
MnlI	CCTC	9 cut(s)	43, 47, 54, 88, 391, 478, 703, 855, 948
MseI	TTAA	3 cut(s)	159, 170, 854
MspI	CCGG	1 cut(s)	728
MspR9I	CCNGG	6 cut(s)	407, 419, 475, 534, 707, 728
MvaI	CCWGG	5 cut(s)	407, 419, 475, 534, 707
MwoI	GCNNNNNNNGC	3 cut(s)	428, 500, 973
NciI	CCSGG	1 cut(s)	728
NdeII	GATC	3 cut(s)	208, 232, 892
NlaIII	CATG	3 cut(s)	219, 752, 824
NsbI	TGCGCA	1 cut(s)	372
NspI	RCATGY	1 cut(s)	219
PciSI	GCTCTTC	1 cut(s)	987
PcsI	WCGNNNNNNNCGW	3 cut(s)	23, 496, 774
PfeI	GAWTC	2 cut(s)	20, 57
PleI	GAGTC	1 cut(s)	995
PmaCI	CACGTG	1 cut(s)	491
PmlI	CACGTG	1 cut(s)	491
PpsI	GAGTC	1 cut(s)	995
Ppu21I	YACGTR	2 cut(s)	122, 491
Psp124BI	GAGCTC	1 cut(s)	999
Psp6I	CCWGG	5 cut(s)	405, 417, 473, 532, 705
PspCI	CACGTG	1 cut(s)	491
PspEI	GGTNACC	1 cut(s)	884
PspGI	CCWGG	5 cut(s)	405, 417, 473, 532, 705
PspPI	GGNCC	1 cut(s)	41
PsuI	RGATCY	1 cut(s)	208
RsaI	GTAC	6 cut(s)	14, 313, 541, 695, 776, 901
RsaNI	GTAC	6 cut(s)	13, 312, 540, 694, 775, 900
SacI	GAGCTC	1 cut(s)	999
SapI	GCTCTTC	1 cut(s)	987
SaqAI	TTAA	3 cut(s)	159, 170, 854
Sau3AI	GATC	3 cut(s)	208, 232, 892
Sau96I	GGNCC	1 cut(s)	41
SchI	GAGTC	1 cut(s)	995
ScrFI	CCNGG	6 cut(s)	407, 419, 475, 534, 707, 728
SduI	GDGCHC	3 cut(s)	496, 680, 999
SfaNI	GCATC	7 cut(s)	70, 187, 319, 382, 418, 553, 703
SmlI	CTYRAG	1 cut(s)	952
SmoI	CTYRAG	1 cut(s)	952
Sse9I	AATT	8 cut(s)	86, 113, 125, 258, 276, 662, 812, 842
SsiI	CCGC	4 cut(s)	537, 859, 976, 1007
SspMI	CTAG	1 cut(s)	788
SstI	GAGCTC	1 cut(s)	999
StyD4I	CCNGG	6 cut(s)	405, 417, 473, 532, 705, 726
StyI	CCWWGG	1 cut(s)	504
TaaI	ACNGT	1 cut(s)	1013
TaiI	ACGT	2 cut(s)	124, 493
TaqI	TCGA	6 cut(s)	53, 296, 674, 768, 908, 999
TasI	AATT	8 cut(s)	86, 113, 125, 258, 276, 662, 812, 842
TatI	WGTACW	2 cut(s)	693, 899
TfiI	GAWTC	2 cut(s)	20, 57
Tru1I	TTAA	3 cut(s)	159, 170, 854
Tru9I	TTAA	3 cut(s)	159, 170, 854
TspDTI	ATGAA	6 cut(s)	17, 114, 657, 737, 845, 930
VneI	GTGCAC	1 cut(s)	492
XapI	RAATTY	5 cut(s)	86, 113, 662, 812, 842
XceI	RCATGY	1 cut(s)	219
XmiI	GTMKAC	2 cut(s)	479, 624
XspI	CTAG	1 cut(s)	788

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.