Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006147.1

Orthogroup ID

OG0004405

Physical Location & Seq

Genomic Coordinates Reverse (-)

19497 .. 22954

Gene Structure 3458 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006147.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

atgggagatgaagttgcagaaggcgtggagggagggagagagagtgatatgttgtgtgtgtggacgaagagttctccttctgaaggctttttctttggaaatagtgtgtactggatacgatttgatgaagaattttctgaaaagaaatttaagtcttcaagcccctttggtatcaagtacaagtttcatctggaggatgctgttgattgccctgaatggatcgtcccctttcatgtattcaaatcattggtagaagagtatgatatggagttaatttttgtgaagaactctcatgaatttgtgcacgagtatatgaaaagaccagagtacgtcgagttaatgcggaggcttggtgcattaggtgacggtaaccaagatcagagtacactatcacaagatgaatgggaagtagcctatttgtacttgtcatttgtcttgaggaagcggggccaacctgatcggactcaaacaaatagtagaagagataaagggaagatgcatatatcaaaagaggacatattgaacattgaacattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001510 GO:0003674 GO:0003824 GO:0004482 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005845 GO:0006139 GO:0006370 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008173 GO:0008174 GO:0008757 GO:0009451 GO:0009452 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016556 GO:0016740 GO:0016741 GO:0032259 GO:0032991 GO:0034518 GO:0034641 GO:0036260 GO:0036265 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0080009 GO:0090304 GO:0106005 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

Pox_MCEL

Protein Analysis

178

Amino Acids

20.95

Weight (kDa)

5.11

Isoelectric Point (pI)

58.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004405)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20650 AT3G20650 AT3G20650
fragaria_vesca	FvH4_3g21511 FvH4_3g21511 FvH4_3g21511 FvH4_6g24821
malus_domestica	MD03G1215400.v1.1 MD11G1013800.v1.1 MD11G1230000.v1.1
prunus_persica	Prupe.4G197400_v2.0.a1
pyrus_communis	pycom03g16380 pycom11g20380
rosa_chinensis	RchiOBHm_Chr1g0332461 RchiOBHm_Chr5g0036961
rosa_laevigata	RLG00000019767 RLG00000029593 RLG00000029668 RLG00000033739
rosa_multiflora	Rmu_sc0000574.1_g000061 Rmu_sc0006147.1_g000007 Rmu_sc0007663.1_g000020 Rmu_sc0024051.1_g000002
rosa_roxburghii	Rroxscaffold_1G00043990 Rroxscaffold_2G00105880
rosa_rugosa	Rorug01G0101300 Rorug05G0159400
rosa_samantha	Rh1DG129900 Rh5DG261500
rosa_wichuraiana	Rw1G010160 Rw1G015570 Rw5G023160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	343, 445
AclWI	GGATC	1 cut(s)	227
AcsI	RAATTY	3 cut(s)	131, 146, 296
AcuI	CTGAAG	1 cut(s)	102
AfaI	GTAC	5 cut(s)	110, 179, 329, 385, 422
AfiI	CCNNNNNNNGG	1 cut(s)	83
AgsI	TTSAA	4 cut(s)	159, 241, 523, 530
AloI	GAACNNNNNNTCC	2 cut(s)	55, 87
Alw21I	GWGCWC	1 cut(s)	306
Alw44I	GTGCAC	1 cut(s)	302
AlwI	GGATC	1 cut(s)	227
AoxI	GGCC	1 cut(s)	448
ApaLI	GTGCAC	1 cut(s)	302
ApoI	RAATTY	3 cut(s)	131, 146, 296
AspS9I	GGNCC	1 cut(s)	448
AsuHPI	GGTGA	1 cut(s)	374
BaeGI	GKGCMC	1 cut(s)	306
BauI	CACGAG	1 cut(s)	305
BbsI	GAAGAC	1 cut(s)	147
Bbv12I	GWGCWC	1 cut(s)	306
BciVI	GTATCC	1 cut(s)	108
BfuI	GTATCC	1 cut(s)	108
BmgT120I	GGNCC	1 cut(s)	448
BmiI	GGNNCC	1 cut(s)	449
BmsI	GCATC	2 cut(s)	187, 486
BpiI	GAAGAC	1 cut(s)	147
BpmI	CTGGAG	1 cut(s)	212
BpuEI	CTTGAG	1 cut(s)	457
BsaXI	ACNNNNNCTCC	5 cut(s)	27, 28, 58, 337, 367
Bsc4I	CCNNNNNNNGG	1 cut(s)	83
Bse1I	ACTGG	1 cut(s)	116
BseGI	GGATG	1 cut(s)	202
BseLI	CCNNNNNNNGG	1 cut(s)	83
BseNI	ACTGG	1 cut(s)	116
BseSI	GKGCMC	1 cut(s)	306
BshFI	GGCC	1 cut(s)	450
BsiHKAI	GWGCWC	1 cut(s)	306
BslFI	GGGAC	1 cut(s)	209
BslI	CCNNNNNNNGG	1 cut(s)	83
BsmFI	GGGAC	1 cut(s)	209
BsnI	GGCC	1 cut(s)	450
Bsp1286I	GDGCHC	1 cut(s)	306
Bsp143I	GATC	3 cut(s)	219, 376, 457
BspACI	CCGC	2 cut(s)	343, 445
BspANI	GGCC	1 cut(s)	450
BspHI	TCATGA	1 cut(s)	292
BspLI	GGNNCC	1 cut(s)	449
BspPI	GGATC	1 cut(s)	227
BsrI	ACTGG	1 cut(s)	116
BssMI	GATC	3 cut(s)	219, 376, 457
BssSI	CACGAG	1 cut(s)	305
Bst2BI	CACGAG	1 cut(s)	305
Bst4CI	ACNGT	1 cut(s)	368
Bst6I	CTCTTC	3 cut(s)	62, 249, 475
BstEII	GGTNACC	1 cut(s)	368
BstENI	CCTNNNNNAGG	1 cut(s)	81
BstF5I	GGATG	1 cut(s)	202
BstKTI	GATC	3 cut(s)	222, 379, 460
BstMBI	GATC	3 cut(s)	219, 376, 457
BstPI	GGTNACC	1 cut(s)	368
BstSLI	GKGCMC	1 cut(s)	306
BstV2I	GAAGAC	1 cut(s)	147
BsuI	GTATCC	1 cut(s)	108
BsuRI	GGCC	1 cut(s)	450
BtsCI	GGATG	1 cut(s)	202
CciI	TCATGA	1 cut(s)	292
Cfr13I	GGNCC	1 cut(s)	448
Csp6I	GTAC	5 cut(s)	109, 178, 328, 384, 421
CviAII	CATG	2 cut(s)	233, 293
CviJI	RGCY	5 cut(s)	87, 162, 349, 413, 450
CviKI_1	RGCY	5 cut(s)	87, 162, 349, 413, 450
CviQI	GTAC	5 cut(s)	109, 178, 328, 384, 421
DpnI	GATC	3 cut(s)	221, 378, 459
DpnII	GATC	3 cut(s)	219, 376, 457
Eam1104I	CTCTTC	3 cut(s)	62, 249, 475
EarI	CTCTTC	3 cut(s)	62, 249, 475
Eco57I	CTGAAG	1 cut(s)	102
Eco91I	GGTNACC	1 cut(s)	368
EcoNI	CCTNNNNNAGG	1 cut(s)	81
EcoO65I	GGTNACC	1 cut(s)	368
EcoT22I	ATGCAT	1 cut(s)	501
FaeI	CATG	2 cut(s)	236, 296
FaqI	GGGAC	1 cut(s)	209
FatI	CATG	2 cut(s)	232, 292
FauI	CCCGC	1 cut(s)	438
FokI	GGATG	1 cut(s)	209
GsuI	CTGGAG	1 cut(s)	212
HaeIII	GGCC	1 cut(s)	450
Hin1II	CATG	2 cut(s)	236, 296
HinfI	GANTC	1 cut(s)	463
HphI	GGTGA	1 cut(s)	374
Hpy166II	GTNNAC	4 cut(s)	63, 109, 304, 386
Hpy188I	TCNGA	4 cut(s)	82, 139, 381, 462
Hpy188III	TCNNGA	3 cut(s)	191, 293, 436
Hpy8I	GTNNAC	4 cut(s)	63, 109, 304, 386
Hpy99I	CGWCG	1 cut(s)	335
HpyAV	CCTTC	3 cut(s)	14, 77, 87
HpyCH4III	ACNGT	1 cut(s)	368
HpyCH4IV	ACGT	1 cut(s)	330
HpyCH4V	TGCA	4 cut(s)	17, 304, 356, 499
HpySE526I	ACGT	1 cut(s)	330
Hsp92II	CATG	2 cut(s)	236, 296
Kzo9I	GATC	3 cut(s)	219, 376, 457
LpnPI	CCDG	5 cut(s)	97, 176, 225, 336, 468
LweI	GCATC	2 cut(s)	187, 486
MaeII	ACGT	1 cut(s)	330
MaeIII	GTNAC	2 cut(s)	362, 368
MalI	GATC	3 cut(s)	221, 378, 459
MboI	GATC	3 cut(s)	219, 376, 457
MboII	GAAGA	7 cut(s)	79, 140, 147, 266, 295, 492, 505
MhlI	GDGCHC	1 cut(s)	306
MluCI	AATT	4 cut(s)	131, 146, 273, 296
MlyI	GAGTC	1 cut(s)	457
MnlI	CCTC	6 cut(s)	22, 26, 187, 339, 432, 505
Mph1103I	ATGCAT	1 cut(s)	501
MseI	TTAA	3 cut(s)	150, 272, 338
NdeII	GATC	3 cut(s)	219, 376, 457
NlaIII	CATG	2 cut(s)	236, 296
NlaIV	GGNNCC	1 cut(s)	449
NmuCI	GTSAC	1 cut(s)	362
NsiI	ATGCAT	1 cut(s)	501
PagI	TCATGA	1 cut(s)	292
PleI	GAGTC	1 cut(s)	457
PpsI	GAGTC	1 cut(s)	457
PspEI	GGTNACC	1 cut(s)	368
PspN4I	GGNNCC	1 cut(s)	449
PspPI	GGNCC	1 cut(s)	448
RsaI	GTAC	5 cut(s)	110, 179, 329, 385, 422
RsaNI	GTAC	5 cut(s)	109, 178, 328, 384, 421
SaqAI	TTAA	3 cut(s)	150, 272, 338
Sau3AI	GATC	3 cut(s)	219, 376, 457
Sau96I	GGNCC	1 cut(s)	448
SchI	GAGTC	1 cut(s)	457
SduI	GDGCHC	1 cut(s)	306
SetI	ASST	3 cut(s)	333, 364, 457
SfaNI	GCATC	2 cut(s)	187, 486
SmlI	CTYRAG	1 cut(s)	436
SmoI	CTYRAG	1 cut(s)	436
Sse9I	AATT	4 cut(s)	131, 146, 273, 296
SsiI	CCGC	2 cut(s)	343, 445
TaaI	ACNGT	1 cut(s)	368
TaiI	ACGT	1 cut(s)	333
TaqI	TCGA	1 cut(s)	333
TasI	AATT	4 cut(s)	131, 146, 273, 296
TatI	WGTACW	4 cut(s)	108, 177, 383, 420
Tru1I	TTAA	3 cut(s)	150, 272, 338
Tru9I	TTAA	3 cut(s)	150, 272, 338
TseFI	GTSAC	1 cut(s)	362
Tsp45I	GTSAC	1 cut(s)	362
TspDTI	ATGAA	7 cut(s)	24, 141, 176, 221, 309, 329, 414
VneI	GTGCAC	1 cut(s)	302
XagI	CCTNNNNNAGG	1 cut(s)	81
XapI	RAATTY	3 cut(s)	131, 146, 296
Zsp2I	ATGCAT	1 cut(s)	501

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.