Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0004405

Physical Location & Seq

Genomic Coordinates Forward (+)

23310751 .. 23314412

Gene Structure 3662 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g20380.9

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1122 bp

ATGAAACGAGGGTACTCCGAATCGTCCTCCACCTCTCTCGGGCCTCCCCAATCGAGATTCAAACACAACCCAGAAGGTGATTCAGAGTTCTTGGAGGATGAAACCACAAAAAAATTCGCACGTAAAGTGGCCGATCATTACAGTGCAAGGACGAATCAAACTCTAGAAGAACGAGAAGCGAGTCCAATCATCCATTTAAAGAAGCTTAACAATTGGATTAAGAGTGTTTTAATCCAGCTATATGCTCATAGAGGAGATGCTGTCCTGGATCTTGCATGTGGCAAGGGAGGTGATCTCATCAAATGGGACAAGGCTAAAATTGCGTATTATGTTGGAATTGATATCGCTGAAGGCTCAATAGAAGATTGTCGTACCCGTTACAATGGCGATGCCGACCATCATCAGCGTCGTAAAAAGTTTACATTTCCTGCGCATCTTATGTGTGGAGATTGCTATGAGGTTCGCCTGGATAAAGTCCTGGCTGACGATGCCCCCTTTGATGTTGTCAGTTGCCAGTTTGCCTTGCATTATTCCTGGTCTACTGAGGCACGTGCGCGGCGAGCCTTGGCTAATGTATCGGCTTTACTGCGACCTGGCGGTACTTTTATTGGAACAATGCCCGATGCGAATGTGATTATCAAAAAGCTTAGAGAAGCTGAAGGATTGGTCTTTGGTAATAGCGTCTACTGGATACGTTTTGATGATGACTTTTCTGAAAAGAAATTCAAGTCTTCGAGCCCCTTTGGTATCAAGTACAAGTTTCACCTGGAGGATGCTGTTGATTGCCCGGAATGGATTGTCCCCTTTCATGTTTTCAAATCGCTGGTTGAAGAGTATGATATGGAGCTAGTTTTCATGAAGAACAACCACGAATTTGTGCATGAGTATATGAAAAAACCAGAATTTGTGGAGTTAATGCGGAGGCTTGGTGCATTAGGTGATGGTAACCAAGATCAAAGCACACTATCGAAAGACGAATGGGAAGTAGCTTATCTCTATTTGGCATTTGTCTTGAGGAAGGTGAGCGAGCGGGAACCTGATCGGACACAAGTAAACGGTAGAAGAGACAAAGGGAAGATGAACATATTAAAGGAGGACGTCATGTACGTAAGTAATGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001510 GO:0003674 GO:0003824 GO:0004482 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005845 GO:0006139 GO:0006370 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008173 GO:0008174 GO:0008757 GO:0009451 GO:0009452 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016556 GO:0016740 GO:0016741 GO:0032259 GO:0032991 GO:0034518 GO:0034641 GO:0036260 GO:0036265 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0080009 GO:0090304 GO:0106005 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

Pox_MCEL

Protein Analysis

374

Amino Acids

42.95

Weight (kDa)

6.34

Isoelectric Point (pI)

41.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004405)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20650 AT3G20650 AT3G20650
fragaria_vesca	FvH4_3g21511 FvH4_3g21511 FvH4_3g21511 FvH4_6g24821
malus_domestica	MD03G1215400.v1.1 MD11G1013800.v1.1 MD11G1230000.v1.1
prunus_persica	Prupe.4G197400_v2.0.a1
pyrus_communis	pycom03g16380 pycom11g20380
rosa_chinensis	RchiOBHm_Chr1g0332461 RchiOBHm_Chr5g0036961
rosa_laevigata	RLG00000019767 RLG00000029593 RLG00000029668 RLG00000033739
rosa_multiflora	Rmu_sc0000574.1_g000061 Rmu_sc0006147.1_g000007 Rmu_sc0007663.1_g000020 Rmu_sc0024051.1_g000002
rosa_roxburghii	Rroxscaffold_1G00043990 Rroxscaffold_2G00105880
rosa_rugosa	Rorug01G0101300 Rorug05G0159400
rosa_samantha	Rh1DG129900 Rh5DG261500
rosa_wichuraiana	Rw1G010160 Rw1G015570 Rw5G023160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1101
Acc16I	TGCGCA	1 cut(s)	432
AccBSI	CCGCTC	1 cut(s)	1030
AccI	GTMKAC	2 cut(s)	539, 684
AccII	CGCG	1 cut(s)	556
AciI	CCGC	4 cut(s)	556, 597, 919, 1030
AclWI	GGATC	1 cut(s)	276
AcoI	YGGCCR	1 cut(s)	129
AcsI	RAATTY	4 cut(s)	113, 722, 872, 902
AcuI	CTGAAG	2 cut(s)	369, 678
AcvI	CACGTG	1 cut(s)	551
AcyI	GRCGYC	1 cut(s)	1098
AfaI	GTAC	5 cut(s)	14, 373, 601, 755, 1106
AfiI	CCNNNNNNNGG	1 cut(s)	39
AgsI	TTSAA	4 cut(s)	61, 727, 817, 830
AjnI	CCWGG	6 cut(s)	264, 465, 477, 533, 592, 765
AluBI	AGCT	6 cut(s)	205, 238, 646, 656, 847, 989
AluI	AGCT	6 cut(s)	205, 238, 646, 656, 847, 989
Alw26I	GTCTC	1 cut(s)	1059
AlwI	GGATC	1 cut(s)	276
Ama87I	CYCGRG	1 cut(s)	38
AoxI	GGCC	2 cut(s)	41, 129
ApoI	RAATTY	4 cut(s)	113, 722, 872, 902
AspLEI	GCGC	2 cut(s)	433, 556
AspS9I	GGNCC	1 cut(s)	41
AsuC2I	CCSGG	1 cut(s)	788
AsuHPI	GGTGA	5 cut(s)	89, 302, 755, 950, 1033
AvaI	CYCGRG	1 cut(s)	38
BanII	GRGCYC	1 cut(s)	740
BbrPI	CACGTG	1 cut(s)	551
BbsI	GAAGAC	1 cut(s)	723
BccI	CCATC	2 cut(s)	405, 935
BciT130I	CCWGG	6 cut(s)	266, 467, 479, 535, 594, 767
BciVI	GTATCC	1 cut(s)	684
BcnI	CCSGG	1 cut(s)	788
BcoDI	GTCTC	1 cut(s)	1059
BfaI	CTAG	3 cut(s)	164, 848, 1120
BfuI	GTATCC	1 cut(s)	684
BisI	GCNGC	1 cut(s)	557
BlsI	GCNGC	1 cut(s)	558
Bme1390I	CCNGG	7 cut(s)	266, 467, 479, 535, 594, 767, 788
BmeT110I	CYCGRG	1 cut(s)	38
BmgT120I	GGNCC	1 cut(s)	41
BmiI	GGNNCC	1 cut(s)	1035
BmrFI	CCNGG	7 cut(s)	266, 467, 479, 535, 594, 767, 788
BmsI	GCATC	6 cut(s)	247, 379, 442, 478, 613, 763
BpiI	GAAGAC	1 cut(s)	723
BplI	GAGNNNNNCTC	2 cut(s)	279, 311
BpmI	CTGGAG	1 cut(s)	788
BpuEI	CTTGAG	1 cut(s)	1033
BpuMI	CCSGG	1 cut(s)	788
BsaAI	YACGTR	3 cut(s)	122, 551, 1108
BsaHI	GRCGYC	1 cut(s)	1098
BsaJI	CCNNGG	1 cut(s)	564
BsaXI	ACNNNNNCTCC	4 cut(s)	246, 276, 913, 943
Bsc4I	CCNNNNNNNGG	1 cut(s)	39
Bse1I	ACTGG	2 cut(s)	514, 692
BseBI	CCWGG	6 cut(s)	266, 467, 479, 535, 594, 767
BseDI	CCNNGG	1 cut(s)	564
BseGI	GGATG	3 cut(s)	103, 189, 778
BseLI	CCNNNNNNNGG	1 cut(s)	39
BseMII	CTCAG	1 cut(s)	534
BseNI	ACTGG	2 cut(s)	514, 692
BseRI	GAGGAG	1 cut(s)	267
Bsh1236I	CGCG	1 cut(s)	556
BshFI	GGCC	2 cut(s)	43, 131
BsiHKCI	CYCGRG	1 cut(s)	38
BsiSI	CCGG	1 cut(s)	788
BslFI	GGGAC	2 cut(s)	320, 785
BslI	CCNNNNNNNGG	1 cut(s)	39
BsmAI	GTCTC	1 cut(s)	1059
BsmFI	GGGAC	2 cut(s)	320, 785
BsnI	GGCC	2 cut(s)	43, 131
BsoBI	CYCGRG	1 cut(s)	38
Bsp1286I	GDGCHC	1 cut(s)	740
Bsp143I	GATC	5 cut(s)	133, 268, 292, 952, 1039
BspACI	CCGC	4 cut(s)	556, 597, 919, 1030
BspANI	GGCC	2 cut(s)	43, 131
BspCNI	CTCAG	1 cut(s)	535
BspFNI	CGCG	1 cut(s)	556
BspHI	TCATGA	1 cut(s)	855
BspLI	GGNNCC	1 cut(s)	1035
BspPI	GGATC	1 cut(s)	276
BsrBI	CCGCTC	1 cut(s)	1030
BsrI	ACTGG	2 cut(s)	514, 692
BssECI	CCNNGG	1 cut(s)	564
BssMI	GATC	5 cut(s)	133, 268, 292, 952, 1039
BssNI	GRCGYC	1 cut(s)	1098
BssT1I	CCWWGG	1 cut(s)	564
Bst2UI	CCWGG	6 cut(s)	266, 467, 479, 535, 594, 767
Bst4CI	ACNGT	2 cut(s)	143, 1058
Bst6I	CTCTTC	2 cut(s)	825, 1057
BstACI	GRCGYC	1 cut(s)	1098
BstBAI	YACGTR	3 cut(s)	122, 551, 1108
BstC8I	GCNNGC	2 cut(s)	561, 1028
BstDEI	CTNAG	2 cut(s)	543, 647
BstEII	GGTNACC	1 cut(s)	944
BstF5I	GGATG	3 cut(s)	103, 189, 778
BstFNI	CGCG	1 cut(s)	556
BstHHI	GCGC	2 cut(s)	433, 556
BstKTI	GATC	5 cut(s)	136, 271, 295, 955, 1042
BstMAI	GTCTC	1 cut(s)	1059
BstMBI	GATC	5 cut(s)	133, 268, 292, 952, 1039
BstMWI	GCNNNNNNNGC	3 cut(s)	320, 488, 560
BstNI	CCWGG	6 cut(s)	266, 467, 479, 535, 594, 767
BstNSI	RCATGY	1 cut(s)	279
BstPI	GGTNACC	1 cut(s)	944
BstSCI	CCNGG	7 cut(s)	264, 465, 477, 533, 592, 765, 786
BstSNI	TACGTA	1 cut(s)	1108
BstUI	CGCG	1 cut(s)	556
BstV2I	GAAGAC	1 cut(s)	723
BstX2I	RGATCY	1 cut(s)	268
BstYI	RGATCY	1 cut(s)	268
BsuI	GTATCC	1 cut(s)	684
BsuRI	GGCC	2 cut(s)	43, 131
BtgZI	GCGATG	1 cut(s)	402
BtsCI	GGATG	3 cut(s)	103, 189, 778
BtsIMutI	CAGTG	1 cut(s)	148
Cac8I	GCNNGC	2 cut(s)	561, 1028
CciI	TCATGA	1 cut(s)	855
CfoI	GCGC	2 cut(s)	433, 556
Cfr13I	GGNCC	1 cut(s)	41
CseI	GACGC	2 cut(s)	395, 670
Csp6I	GTAC	5 cut(s)	13, 372, 600, 754, 1105
CviAII	CATG	5 cut(s)	276, 809, 856, 881, 1102
CviQI	GTAC	5 cut(s)	13, 372, 600, 754, 1105
DdeI	CTNAG	2 cut(s)	543, 647
DpnI	GATC	5 cut(s)	135, 270, 294, 954, 1041
DpnII	GATC	5 cut(s)	133, 268, 292, 952, 1039
DraI	TTTAAA	1 cut(s)	198
EaeI	YGGCCR	1 cut(s)	129
Eam1104I	CTCTTC	2 cut(s)	825, 1057
EarI	CTCTTC	2 cut(s)	825, 1057
Eco105I	TACGTA	1 cut(s)	1108
Eco130I	CCWWGG	1 cut(s)	564
Eco24I	GRGCYC	1 cut(s)	740
Eco32I	GATATC	1 cut(s)	343
Eco57I	CTGAAG	2 cut(s)	369, 678
Eco72I	CACGTG	1 cut(s)	551
Eco88I	CYCGRG	1 cut(s)	38
Eco91I	GGTNACC	1 cut(s)	944
EcoO65I	GGTNACC	1 cut(s)	944
EcoRII	CCWGG	6 cut(s)	264, 465, 477, 533, 592, 765
EcoRV	GATATC	1 cut(s)	343
EcoT14I	CCWWGG	1 cut(s)	564
EcoT38I	GRGCYC	1 cut(s)	740
ErhI	CCWWGG	1 cut(s)	564
FaeI	CATG	5 cut(s)	279, 812, 859, 884, 1105
FaqI	GGGAC	2 cut(s)	320, 785
FatI	CATG	5 cut(s)	275, 808, 855, 880, 1101
FauI	CCCGC	1 cut(s)	1023
FblI	GTMKAC	2 cut(s)	539, 684
Fnu4HI	GCNGC	1 cut(s)	557
FokI	GGATG	3 cut(s)	110, 176, 785
FriOI	GRGCYC	1 cut(s)	740
Fsp4HI	GCNGC	1 cut(s)	557
FspBI	CTAG	3 cut(s)	164, 848, 1120
FspI	TGCGCA	1 cut(s)	432
GlaI	GCGC	2 cut(s)	432, 555
GluI	GCNGC	1 cut(s)	557
GsuI	CTGGAG	1 cut(s)	788
HaeIII	GGCC	2 cut(s)	43, 131
HapII	CCGG	1 cut(s)	788
HgaI	GACGC	2 cut(s)	395, 670
HhaI	GCGC	2 cut(s)	433, 556
Hin1I	GRCGYC	1 cut(s)	1098
Hin1II	CATG	5 cut(s)	279, 812, 859, 884, 1105
Hin6I	GCGC	2 cut(s)	431, 554
HinP1I	GCGC	2 cut(s)	431, 554
HindIII	AAGCTT	2 cut(s)	203, 644
HinfI	GANTC	5 cut(s)	20, 57, 80, 154, 181
HpaII	CCGG	1 cut(s)	788
HphI	GGTGA	5 cut(s)	89, 302, 755, 950, 1033
Hpy166II	GTNNAC	4 cut(s)	420, 540, 685, 1054
Hpy188I	TCNGA	4 cut(s)	19, 85, 715, 1044
Hpy188III	TCNNGA	4 cut(s)	54, 164, 856, 1012
Hpy8I	GTNNAC	4 cut(s)	420, 540, 685, 1054
Hpy99I	CGWCG	1 cut(s)	411
HpyAV	CCTTC	4 cut(s)	68, 344, 653, 1012
HpyCH4III	ACNGT	2 cut(s)	143, 1058
HpyCH4IV	ACGT	5 cut(s)	121, 550, 694, 1098, 1107
HpyCH4V	TGCA	5 cut(s)	146, 275, 526, 880, 932
HpyF10VI	GCNNNNNNNGC	3 cut(s)	320, 488, 560
HpyF3I	CTNAG	2 cut(s)	543, 647
HpySE526I	ACGT	5 cut(s)	121, 550, 694, 1098, 1107
Hsp92I	GRCGYC	1 cut(s)	1098
Hsp92II	CATG	5 cut(s)	279, 812, 859, 884, 1105
HspAI	GCGC	2 cut(s)	431, 554
Kzo9I	GATC	5 cut(s)	133, 268, 292, 952, 1039
LmnI	GCTCC	1 cut(s)	844
LweI	GCATC	6 cut(s)	247, 379, 442, 478, 613, 763
MaeI	CTAG	3 cut(s)	164, 848, 1120
MaeII	ACGT	5 cut(s)	121, 550, 694, 1098, 1107
MaeIII	GTNAC	2 cut(s)	377, 944
MalI	GATC	5 cut(s)	135, 270, 294, 954, 1041
MbiI	CCGCTC	1 cut(s)	1030
MboI	GATC	5 cut(s)	133, 268, 292, 952, 1039
MboII	GAAGA	7 cut(s)	179, 374, 723, 842, 871, 1074, 1087
MfeI	CAATTG	1 cut(s)	211
MflI	RGATCY	1 cut(s)	268
MhlI	GDGCHC	1 cut(s)	740
MluCI	AATT	7 cut(s)	113, 211, 318, 336, 722, 872, 902
MlyI	GAGTC	1 cut(s)	190
MmeI	TCCRAC	1 cut(s)	313
MseI	TTAA	6 cut(s)	197, 207, 219, 230, 914, 1088
MslI	CAYNNNNRTG	1 cut(s)	141
MspI	CCGG	1 cut(s)	788
MspR9I	CCNGG	7 cut(s)	266, 467, 479, 535, 594, 767, 788
MunI	CAATTG	1 cut(s)	211
MvaI	CCWGG	6 cut(s)	266, 467, 479, 535, 594, 767
MvnI	CGCG	1 cut(s)	556
MwoI	GCNNNNNNNGC	3 cut(s)	320, 488, 560
NciI	CCSGG	1 cut(s)	788
NdeII	GATC	5 cut(s)	133, 268, 292, 952, 1039
NlaIII	CATG	5 cut(s)	279, 812, 859, 884, 1105
NlaIV	GGNNCC	1 cut(s)	1035
NsbI	TGCGCA	1 cut(s)	432
NspI	RCATGY	1 cut(s)	279
PagI	TCATGA	1 cut(s)	855
PcsI	WCGNNNNNNNCGW	2 cut(s)	556, 1104
PfeI	GAWTC	4 cut(s)	20, 57, 80, 154
PfoI	TCCNGGA	1 cut(s)	264
PkrI	GCNGC	1 cut(s)	558
PleI	GAGTC	1 cut(s)	189
PmaCI	CACGTG	1 cut(s)	551
PmlI	CACGTG	1 cut(s)	551
PpsI	GAGTC	1 cut(s)	189
Ppu21I	YACGTR	3 cut(s)	122, 551, 1108
Psp6I	CCWGG	6 cut(s)	264, 465, 477, 533, 592, 765
PspCI	CACGTG	1 cut(s)	551
PspEI	GGTNACC	1 cut(s)	944
PspGI	CCWGG	6 cut(s)	264, 465, 477, 533, 592, 765
PspN4I	GGNNCC	1 cut(s)	1035
PspPI	GGNCC	1 cut(s)	41
PsuI	RGATCY	1 cut(s)	268
RsaI	GTAC	5 cut(s)	14, 373, 601, 755, 1106
RsaNI	GTAC	5 cut(s)	13, 372, 600, 754, 1105
RseI	CAYNNNNRTG	1 cut(s)	141
SaqAI	TTAA	6 cut(s)	197, 207, 219, 230, 914, 1088
SatI	GCNGC	1 cut(s)	557
Sau3AI	GATC	5 cut(s)	133, 268, 292, 952, 1039
Sau96I	GGNCC	1 cut(s)	41
SchI	GAGTC	1 cut(s)	190
ScrFI	CCNGG	7 cut(s)	266, 467, 479, 535, 594, 767, 788
SduI	GDGCHC	1 cut(s)	740
SfaNI	GCATC	6 cut(s)	247, 379, 442, 478, 613, 763
SmiMI	CAYNNNNRTG	1 cut(s)	141
SmlI	CTYRAG	1 cut(s)	1012
SmoI	CTYRAG	1 cut(s)	1012
SnaBI	TACGTA	1 cut(s)	1108
Sse9I	AATT	7 cut(s)	113, 211, 318, 336, 722, 872, 902
SsiI	CCGC	4 cut(s)	556, 597, 919, 1030
SspMI	CTAG	3 cut(s)	164, 848, 1120
StyD4I	CCNGG	7 cut(s)	264, 465, 477, 533, 592, 765, 786
StyI	CCWWGG	1 cut(s)	564
TaaI	ACNGT	2 cut(s)	143, 1058
TaiI	ACGT	5 cut(s)	124, 553, 697, 1101, 1110
TaqI	TCGA	3 cut(s)	53, 734, 968
TasI	AATT	7 cut(s)	113, 211, 318, 336, 722, 872, 902
TatI	WGTACW	1 cut(s)	753
TauI	GCSGC	1 cut(s)	559
TfiI	GAWTC	4 cut(s)	20, 57, 80, 154
Tru1I	TTAA	6 cut(s)	197, 207, 219, 230, 914, 1088
Tru9I	TTAA	6 cut(s)	197, 207, 219, 230, 914, 1088
TscAI	CASTG	1 cut(s)	148
TspDTI	ATGAA	7 cut(s)	17, 114, 797, 844, 872, 905, 1094
TspRI	CASTG	1 cut(s)	148
XapI	RAATTY	4 cut(s)	113, 722, 872, 902
XbaI	TCTAGA	1 cut(s)	163
XceI	RCATGY	1 cut(s)	279
XmiI	GTMKAC	2 cut(s)	539, 684
XspI	CTAG	3 cut(s)	164, 848, 1120
ZraI	GACGTC	1 cut(s)	1099

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.