Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0004405

Physical Location & Seq

Genomic Coordinates Reverse (-)

42603805 .. 42607852

Gene Structure 4048 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029668

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

ATGAAACGAGGCTACTCAGAATCGTCCTCAATCTCTGTTGGGCCTCCTCAATCGAGGTTCAAAGCCAACCCAGAAGAGGATTCAAATTTCTTGGAAGATGAGAGCACAAAGATTTTTGCACGAAAAGTGGCCGATCATTATAGTGCAAGGACAAATCAAACTCTGGAAGAACGAGAAGCTAGTCCGATCATCCATTTAAAAAAGCTTAACAACTGGATTAAGAGTGTCTTAATTCAGCTCTATGCTCGCAGAGGAGATGCTGTTCTTGATCTTGCATGCGGCAAGGGAGGTGATCTCATCAAATGGGACAAGGCCAAAATTGGGTACTATGTTGGTATTGATATTGCTGAAGGGTCTATAGAAGATTGTCGTACCCGTTACAATGGTGATGCTGATCATCATCAACGCCGTAAAAAGTTTACATTTCCTGCACGCCTTATCTGTGGAGACTGCTATGAGGTTCGACTGGATAAAGCCCTAGCAGATGATGCACCCTTTGATATTTGCAGTTGCCAGTTTGCCTTGCATTATTCCTGGTCCACTGAAGCACGAGCACGGAGAGCCTTGGCTAATGTTTCAGCCTTACTTCGCCCAGGTGGAACTTTCATTGGAACAATGCCAGACGCTAATGTGATTATCAAAAAGCTGAGAGAAGCTGAAGGCTTATTCTTTGGAAATAGTGTCTACTGGATACGATTTGACGAAGAATTTTCAGAAAAGAAATTTAAGTCTTCAAGCCCCTTTGGTATCAAGTACAAGTTTCATCTTGAGGATGCTGTTGATTGCCCTGAATGGATCGTCCCTTTTCATGTATTCAAATCATTGGTAGAAGAGTATGATATGGAGTTAATTTTTGTGAAGAACTCTCATGAATTTGTGCACGAGTATATGAAAAGACCCGAGTACGTAGAGTTAATGCGGAGGCTTGGTGCATTAGGTGATGGTAACCAAGATCAGAGTACACTATCACAAGATGAATGGGAAGTAGCCTATTTGTACTTGTCATTTGTTTTGAGGAAGCGCGGCCAACCTGATCGGACTCAACCAAATGGTAGAAGAGATAAAGGGCAGATGCATATATCAAAACAGGACATGTTGAACATTGAACATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001510 GO:0003674 GO:0003824 GO:0004482 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005845 GO:0006139 GO:0006370 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008173 GO:0008174 GO:0008757 GO:0009451 GO:0009452 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016556 GO:0016740 GO:0016741 GO:0032259 GO:0032991 GO:0034518 GO:0034641 GO:0036260 GO:0036265 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0080009 GO:0090304 GO:0106005 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

Pox_MCEL

Protein Analysis

371

Amino Acids

42.66

Weight (kDa)

6.62

Isoelectric Point (pI)

51.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
mRNA_G-N7_MeTrfase	PF03291	32 - 341	3.3e-129	mRNA (guanine-N(7))-methyltransferase domain
Methyltransf_31	PF13847	84 - 209	9.4e-09	Methyltransferase domain
Methyltransf_25	PF13649	88 - 200	1.6e-10	Methyltransferase domain
Methyltransf_12	PF08242	89 - 202	9.2e-10	Methyltransferase domain
Methyltransf_11	PF08241	89 - 203	2.6e-09	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004405)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20650 AT3G20650 AT3G20650
fragaria_vesca	FvH4_3g21511 FvH4_3g21511 FvH4_3g21511 FvH4_6g24821
malus_domestica	MD03G1215400.v1.1 MD11G1013800.v1.1 MD11G1230000.v1.1
prunus_persica	Prupe.4G197400_v2.0.a1
pyrus_communis	pycom03g16380 pycom11g20380
rosa_chinensis	RchiOBHm_Chr1g0332461 RchiOBHm_Chr5g0036961
rosa_laevigata	RLG00000019767 RLG00000029593 RLG00000029668 RLG00000033739
rosa_multiflora	Rmu_sc0000574.1_g000061 Rmu_sc0006147.1_g000007 Rmu_sc0007663.1_g000020 Rmu_sc0024051.1_g000002
rosa_roxburghii	Rroxscaffold_1G00043990 Rroxscaffold_2G00105880
rosa_rugosa	Rorug01G0101300 Rorug05G0159400
rosa_samantha	Rh1DG129900 Rh5DG261500
rosa_wichuraiana	Rw1G010160 Rw1G015570 Rw5G023160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	684
AccII	CGCG	1 cut(s)	1023
AciI	CCGC	3 cut(s)	279, 919, 1023
AclWI	GGATC	1 cut(s)	803
AcoI	YGGCCR	2 cut(s)	129, 1024
AcsI	RAATTY	4 cut(s)	85, 707, 722, 872
AcuI	CTGAAG	3 cut(s)	369, 564, 678
AfaI	GTAC	6 cut(s)	326, 373, 755, 905, 961, 998
AfiI	CCNNNNNNNGG	2 cut(s)	76, 321
AflIII	ACRYGT	1 cut(s)	1092
AgsI	TTSAA	6 cut(s)	61, 84, 735, 817, 1099, 1106
AjnI	CCWGG	2 cut(s)	533, 592
AloI	GAACNNNNNNTCC	2 cut(s)	246, 278
AluBI	AGCT	5 cut(s)	179, 205, 238, 646, 656
AluI	AGCT	5 cut(s)	179, 205, 238, 646, 656
Alw21I	GWGCWC	3 cut(s)	107, 556, 882
Alw26I	GTCTC	1 cut(s)	441
Alw44I	GTGCAC	1 cut(s)	878
AlwI	GGATC	1 cut(s)	803
Ama87I	CYCGRG	1 cut(s)	899
AoxI	GGCC	4 cut(s)	41, 129, 312, 1024
ApaLI	GTGCAC	1 cut(s)	878
ApoI	RAATTY	4 cut(s)	85, 707, 722, 872
AspLEI	GCGC	1 cut(s)	1023
AspS9I	GGNCC	2 cut(s)	41, 537
AsuHPI	GGTGA	3 cut(s)	302, 398, 950
AvaI	CYCGRG	1 cut(s)	899
AvaII	GGWCC	1 cut(s)	537
BaeGI	GKGCMC	1 cut(s)	882
BauI	CACGAG	2 cut(s)	549, 881
BbsI	GAAGAC	1 cut(s)	723
Bbv12I	GWGCWC	3 cut(s)	107, 556, 882
BccI	CCATC	1 cut(s)	935
BceAI	ACGGC	1 cut(s)	393
BciT130I	CCWGG	2 cut(s)	535, 594
BciVI	GTATCC	1 cut(s)	684
BclI	TGATCA	1 cut(s)	394
BcoDI	GTCTC	1 cut(s)	441
BfaI	CTAG	2 cut(s)	180, 479
BfmI	CTRYAG	1 cut(s)	357
BfuI	GTATCC	1 cut(s)	684
BisI	GCNGC	2 cut(s)	280, 1024
BlsI	GCNGC	2 cut(s)	281, 1025
Bme1390I	CCNGG	2 cut(s)	535, 594
Bme18I	GGWCC	1 cut(s)	537
BmeT110I	CYCGRG	1 cut(s)	899
BmgT120I	GGNCC	2 cut(s)	41, 537
BmrFI	CCNGG	2 cut(s)	535, 594
BmsI	GCATC	5 cut(s)	247, 379, 478, 763, 1062
BpiI	GAAGAC	1 cut(s)	723
BplI	GAGNNNNNCTC	2 cut(s)	279, 311
BpuEI	CTTGAG	1 cut(s)	788
BsaAI	YACGTR	1 cut(s)	907
BsaBI	GATNNNNATC	2 cut(s)	393, 399
BsaJI	CCNNGG	2 cut(s)	564, 592
BsaXI	ACNNNNNCTCC	4 cut(s)	246, 276, 913, 943
Bsc4I	CCNNNNNNNGG	2 cut(s)	76, 321
Bse1I	ACTGG	4 cut(s)	218, 471, 514, 692
Bse8I	GATNNNNATC	2 cut(s)	393, 399
BseBI	CCWGG	2 cut(s)	535, 594
BseDI	CCNNGG	2 cut(s)	564, 592
BseGI	GGATG	2 cut(s)	189, 778
BseJI	GATNNNNATC	2 cut(s)	393, 399
BseLI	CCNNNNNNNGG	2 cut(s)	76, 321
BseMII	CTCAG	2 cut(s)	30, 638
BseNI	ACTGG	4 cut(s)	218, 471, 514, 692
BseRI	GAGGAG	2 cut(s)	36, 267
BseSI	GKGCMC	1 cut(s)	882
BsgI	GTGCAG	1 cut(s)	414
Bsh1236I	CGCG	1 cut(s)	1023
BshFI	GGCC	4 cut(s)	43, 131, 314, 1026
BsiHKAI	GWGCWC	3 cut(s)	107, 556, 882
BsiHKCI	CYCGRG	1 cut(s)	899
BslFI	GGGAC	2 cut(s)	320, 785
BslI	CCNNNNNNNGG	2 cut(s)	76, 321
BsmAI	GTCTC	1 cut(s)	441
BsmFI	GGGAC	2 cut(s)	320, 785
BsnI	GGCC	4 cut(s)	43, 131, 314, 1026
BsoBI	CYCGRG	1 cut(s)	899
Bsp1286I	GDGCHC	3 cut(s)	107, 556, 882
Bsp143I	GATC	8 cut(s)	133, 186, 268, 292, 394, 795, 952, 1033
BspACI	CCGC	3 cut(s)	279, 919, 1023
BspANI	GGCC	4 cut(s)	43, 131, 314, 1026
BspCNI	CTCAG	2 cut(s)	29, 639
BspFNI	CGCG	1 cut(s)	1023
BspHI	TCATGA	1 cut(s)	868
BspPI	GGATC	1 cut(s)	803
BsrI	ACTGG	4 cut(s)	218, 471, 514, 692
BssECI	CCNNGG	2 cut(s)	564, 592
BssMI	GATC	8 cut(s)	133, 186, 268, 292, 394, 795, 952, 1033
BssSI	CACGAG	2 cut(s)	549, 881
BssT1I	CCWWGG	1 cut(s)	564
Bst2BI	CACGAG	2 cut(s)	549, 881
Bst2UI	CCWGG	2 cut(s)	535, 594
Bst6I	CTCTTC	3 cut(s)	69, 825, 1051
BstAPI	GCANNNNNTGC	1 cut(s)	488
BstBAI	YACGTR	1 cut(s)	907
BstC8I	GCNNGC	3 cut(s)	247, 277, 433
BstDEI	CTNAG	2 cut(s)	16, 647
BstEII	GGTNACC	1 cut(s)	944
BstF5I	GGATG	2 cut(s)	189, 778
BstFNI	CGCG	1 cut(s)	1023
BstHHI	GCGC	1 cut(s)	1023
BstKTI	GATC	8 cut(s)	136, 189, 271, 295, 397, 798, 955, 1036
BstMAI	GTCTC	1 cut(s)	441
BstMBI	GATC	8 cut(s)	133, 186, 268, 292, 394, 795, 952, 1033
BstMWI	GCNNNNNNNGC	2 cut(s)	488, 560
BstNI	CCWGG	2 cut(s)	535, 594
BstNSI	RCATGY	2 cut(s)	279, 1096
BstPI	GGTNACC	1 cut(s)	944
BstSCI	CCNGG	2 cut(s)	533, 592
BstSFI	CTRYAG	1 cut(s)	357
BstSLI	GKGCMC	1 cut(s)	882
BstSNI	TACGTA	1 cut(s)	907
BstUI	CGCG	1 cut(s)	1023
BstV2I	GAAGAC	1 cut(s)	723
BsuI	GTATCC	1 cut(s)	684
BsuRI	GGCC	4 cut(s)	43, 131, 314, 1026
BtsCI	GGATG	2 cut(s)	189, 778
BtsIMutI	CAGTG	1 cut(s)	540
Cac8I	GCNNGC	3 cut(s)	247, 277, 433
CciI	TCATGA	1 cut(s)	868
CfoI	GCGC	1 cut(s)	1023
Cfr13I	GGNCC	2 cut(s)	41, 537
CseI	GACGC	1 cut(s)	632
Csp6I	GTAC	6 cut(s)	325, 372, 754, 904, 960, 997
CviAII	CATG	4 cut(s)	276, 809, 869, 1093
CviQI	GTAC	6 cut(s)	325, 372, 754, 904, 960, 997
DdeI	CTNAG	2 cut(s)	16, 647
DpnI	GATC	8 cut(s)	135, 188, 270, 294, 396, 797, 954, 1035
DpnII	GATC	8 cut(s)	133, 186, 268, 292, 394, 795, 952, 1033
DraI	TTTAAA	1 cut(s)	198
EaeI	YGGCCR	2 cut(s)	129, 1024
Eam1104I	CTCTTC	3 cut(s)	69, 825, 1051
EarI	CTCTTC	3 cut(s)	69, 825, 1051
Eco105I	TACGTA	1 cut(s)	907
Eco130I	CCWWGG	1 cut(s)	564
Eco47I	GGWCC	1 cut(s)	537
Eco57I	CTGAAG	3 cut(s)	369, 564, 678
Eco88I	CYCGRG	1 cut(s)	899
Eco91I	GGTNACC	1 cut(s)	944
EcoO65I	GGTNACC	1 cut(s)	944
EcoRII	CCWGG	2 cut(s)	533, 592
EcoT14I	CCWWGG	1 cut(s)	564
EcoT22I	ATGCAT	1 cut(s)	1077
ErhI	CCWWGG	1 cut(s)	564
FaeI	CATG	4 cut(s)	279, 812, 872, 1096
FalI	AAGNNNNNCTT	2 cut(s)	212, 244
FaqI	GGGAC	2 cut(s)	320, 785
FatI	CATG	4 cut(s)	275, 808, 868, 1092
FbaI	TGATCA	1 cut(s)	394
FblI	GTMKAC	1 cut(s)	684
Fnu4HI	GCNGC	2 cut(s)	280, 1024
FokI	GGATG	2 cut(s)	176, 785
Fsp4HI	GCNGC	2 cut(s)	280, 1024
FspBI	CTAG	2 cut(s)	180, 479
GlaI	GCGC	1 cut(s)	1022
GluI	GCNGC	2 cut(s)	280, 1024
HaeIII	GGCC	4 cut(s)	43, 131, 314, 1026
HgaI	GACGC	1 cut(s)	632
HhaI	GCGC	1 cut(s)	1023
Hin1II	CATG	4 cut(s)	279, 812, 872, 1096
Hin6I	GCGC	1 cut(s)	1021
HinP1I	GCGC	1 cut(s)	1021
HindIII	AAGCTT	1 cut(s)	203
HinfI	GANTC	3 cut(s)	20, 80, 1039
HphI	GGTGA	3 cut(s)	302, 398, 950
Hpy166II	GTNNAC	5 cut(s)	420, 540, 685, 880, 962
Hpy188I	TCNGA	5 cut(s)	19, 186, 715, 957, 1038
Hpy188III	TCNNGA	4 cut(s)	164, 266, 767, 869
Hpy8I	GTNNAC	5 cut(s)	420, 540, 685, 880, 962
HpyAV	CCTTC	2 cut(s)	344, 653
HpyCH4IV	ACGT	1 cut(s)	906
HpyF10VI	GCNNNNNNNGC	2 cut(s)	488, 560
HpyF3I	CTNAG	2 cut(s)	16, 647
HpySE526I	ACGT	1 cut(s)	906
Hsp92II	CATG	4 cut(s)	279, 812, 872, 1096
HspAI	GCGC	1 cut(s)	1021
Ksp22I	TGATCA	1 cut(s)	394
Kzo9I	GATC	8 cut(s)	133, 186, 268, 292, 394, 795, 952, 1033
LweI	GCATC	5 cut(s)	247, 379, 478, 763, 1062
MaeI	CTAG	2 cut(s)	180, 479
MaeII	ACGT	1 cut(s)	906
MaeIII	GTNAC	2 cut(s)	377, 944
MalI	GATC	8 cut(s)	135, 188, 270, 294, 396, 797, 954, 1035
MboI	GATC	8 cut(s)	133, 186, 268, 292, 394, 795, 952, 1033
MboII	GAAGA	9 cut(s)	86, 107, 179, 374, 716, 723, 842, 871, 1068
MhlI	GDGCHC	3 cut(s)	107, 556, 882
MluCI	AATT	7 cut(s)	85, 231, 318, 707, 722, 849, 872
MlyI	GAGTC	1 cut(s)	1033
Mph1103I	ATGCAT	1 cut(s)	1077
MseI	TTAA	7 cut(s)	197, 207, 219, 230, 726, 848, 914
MslI	CAYNNNNRTG	1 cut(s)	141
MspR9I	CCNGG	2 cut(s)	535, 594
MvaI	CCWGG	2 cut(s)	535, 594
MvnI	CGCG	1 cut(s)	1023
MwoI	GCNNNNNNNGC	2 cut(s)	488, 560
NdeII	GATC	8 cut(s)	133, 186, 268, 292, 394, 795, 952, 1033
NlaIII	CATG	4 cut(s)	279, 812, 872, 1096
NsiI	ATGCAT	1 cut(s)	1077
NspI	RCATGY	2 cut(s)	279, 1096
PaeI	GCATGC	1 cut(s)	279
PagI	TCATGA	1 cut(s)	868
PciI	ACATGT	1 cut(s)	1092
PfeI	GAWTC	2 cut(s)	20, 80
PkrI	GCNGC	2 cut(s)	281, 1025
PleI	GAGTC	1 cut(s)	1033
PpsI	GAGTC	1 cut(s)	1033
Ppu21I	YACGTR	1 cut(s)	907
PscI	ACATGT	1 cut(s)	1092
Psp6I	CCWGG	2 cut(s)	533, 592
PspEI	GGTNACC	1 cut(s)	944
PspGI	CCWGG	2 cut(s)	533, 592
PspPI	GGNCC	2 cut(s)	41, 537
RsaI	GTAC	6 cut(s)	326, 373, 755, 905, 961, 998
RsaNI	GTAC	6 cut(s)	325, 372, 754, 904, 960, 997
RseI	CAYNNNNRTG	1 cut(s)	141
SaqAI	TTAA	7 cut(s)	197, 207, 219, 230, 726, 848, 914
SatI	GCNGC	2 cut(s)	280, 1024
Sau3AI	GATC	8 cut(s)	133, 186, 268, 292, 394, 795, 952, 1033
Sau96I	GGNCC	2 cut(s)	41, 537
SchI	GAGTC	1 cut(s)	1033
ScrFI	CCNGG	2 cut(s)	535, 594
SduI	GDGCHC	3 cut(s)	107, 556, 882
SfaNI	GCATC	5 cut(s)	247, 379, 478, 763, 1062
SfcI	CTRYAG	1 cut(s)	357
SinI	GGWCC	1 cut(s)	537
SmiMI	CAYNNNNRTG	1 cut(s)	141
SmlI	CTYRAG	1 cut(s)	767
SmoI	CTYRAG	1 cut(s)	767
SnaBI	TACGTA	1 cut(s)	907
SphI	GCATGC	1 cut(s)	279
Sse9I	AATT	7 cut(s)	85, 231, 318, 707, 722, 849, 872
SsiI	CCGC	3 cut(s)	279, 919, 1023
SspMI	CTAG	2 cut(s)	180, 479
StyD4I	CCNGG	2 cut(s)	533, 592
StyI	CCWWGG	1 cut(s)	564
TaiI	ACGT	1 cut(s)	909
TaqI	TCGA	2 cut(s)	53, 463
TasI	AATT	7 cut(s)	85, 231, 318, 707, 722, 849, 872
TatI	WGTACW	3 cut(s)	753, 959, 996
TauI	GCSGC	2 cut(s)	282, 1026
TfiI	GAWTC	2 cut(s)	20, 80
Tru1I	TTAA	7 cut(s)	197, 207, 219, 230, 726, 848, 914
Tru9I	TTAA	7 cut(s)	197, 207, 219, 230, 726, 848, 914
TscAI	CASTG	1 cut(s)	547
TspDTI	ATGAA	7 cut(s)	17, 595, 752, 797, 885, 905, 990
TspGWI	ACGGA	1 cut(s)	571
TspRI	CASTG	1 cut(s)	547
VneI	GTGCAC	1 cut(s)	878
VpaK11BI	GGWCC	1 cut(s)	537
XapI	RAATTY	4 cut(s)	85, 707, 722, 872
XceI	RCATGY	2 cut(s)	279, 1096
XmiI	GTMKAC	1 cut(s)	684
XspI	CTAG	2 cut(s)	180, 479
Zsp2I	ATGCAT	1 cut(s)	1077

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.