Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0004405

Physical Location & Seq

Genomic Coordinates Forward (+)

56455156 .. 56459572

Gene Structure 4417 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000019767

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGAAACGAGGCTACTCAGAATTGTCCTCAGCCTCTGTTGGGCCTCCTCAATCGCGGTTCAAAGCCAACCCAGAAGAGGATTCAAATTTCTTGGAGGATGAGAGCACAAAGATTTTTGCACGAAAAGTGGCCGATCATTATAGTGCAAGGACAAATCAAACTCTGGAAGAACGAGAAGCTAGTCCGATCATCCATTTAAAAAGGCTTAACAACTGGATTAAGAGTGTCTTAATTCAGCTCTATGCTCACCGAGGAGATGCTGTTCTTGATCTTGCATGTGGCAAGGGAGGTGATCTCATCAAATGGGACAAGGCCAATATTGGGTACTATGTTGGCATTGATATTGCTGAAGGCTCCATAGAAGATTGTCGTACCCATTACAATGGTGATGCCGATCATCATCAACACCGTAAAAAGTTTACATTGCCTGCATACCTTATCTGTGGAGACTGCTATGAGGTTCGACTGGATAAAACCCTACCAGATGATGCACCCTTTGATATTTGCAGTTGCCAGTTTGCCTTGCATTATTCCTGGTCCACTGAAGCACGAGCACGGAGAGCCTTGGCTAATGTTTCAGCCTTACTTCGCCCGGGCGGAACTTTCATTGGAACAATACCAGACGCTAATGTGATTATCAAAATGCTGAGAGAAGCTGAAGGCTTATTCTTTGGAAATAGTGTCTACTGGATACGATTTGATGAAGAATTTTCGGAAAAGGATGCTGTTGATTGCCCTGAATGGATCATCCCCTTTCATGTATTCAAATCATTGGTAGAAGAGTATATGAAAAGACCAGAGTACGTAGAGTTAATGCGAAGGCTTGGTGCATTAGGTGACGGTAACCAAGATCAGAGTACACTATCAGAAGATGAATGGGAAGCAGCCTATCTGTACTTGTCATTTGTCTTGAGGAAGCGGGGCCAACCTGATCGGACTCAACCAAATGGTAGAGCAGATAAAGGGAAGATGCATATATCAAAAGAGGACATGTTGAACATTGAACATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001510 GO:0003674 GO:0003824 GO:0004482 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005845 GO:0006139 GO:0006370 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008173 GO:0008174 GO:0008757 GO:0009451 GO:0009452 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016556 GO:0016740 GO:0016741 GO:0032259 GO:0032991 GO:0034518 GO:0034641 GO:0036260 GO:0036265 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0080009 GO:0090304 GO:0106005 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

Pox_MCEL

Protein Analysis

337

Amino Acids

38.38

Weight (kDa)

5.62

Isoelectric Point (pI)

49.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
mRNA_G-N7_MeTrfase	PF03291	32 - 307	8.6e-98	mRNA (guanine-N(7))-methyltransferase domain
Methyltransf_31	PF13847	83 - 208	3.1e-07	Methyltransferase domain
Methyltransf_25	PF13649	88 - 200	5.5e-10	Methyltransferase domain
Methyltransf_12	PF08242	89 - 202	1.4e-09	Methyltransferase domain
Methyltransf_11	PF08241	89 - 203	5e-09	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004405)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20650 AT3G20650 AT3G20650
fragaria_vesca	FvH4_3g21511 FvH4_3g21511 FvH4_3g21511 FvH4_6g24821
malus_domestica	MD03G1215400.v1.1 MD11G1013800.v1.1 MD11G1230000.v1.1
prunus_persica	Prupe.4G197400_v2.0.a1
pyrus_communis	pycom03g16380 pycom11g20380
rosa_chinensis	RchiOBHm_Chr1g0332461 RchiOBHm_Chr5g0036961
rosa_laevigata	RLG00000019767 RLG00000029593 RLG00000029668 RLG00000033739
rosa_multiflora	Rmu_sc0000574.1_g000061 Rmu_sc0006147.1_g000007 Rmu_sc0007663.1_g000020 Rmu_sc0024051.1_g000002
rosa_roxburghii	Rroxscaffold_1G00043990 Rroxscaffold_2G00105880
rosa_rugosa	Rorug01G0101300 Rorug05G0159400
rosa_samantha	Rh1DG129900 Rh5DG261500
rosa_wichuraiana	Rw1G010160 Rw1G015570 Rw5G023160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	684
AccII	CGCG	1 cut(s)	55
AciI	CCGC	3 cut(s)	55, 597, 919
AclWI	GGATC	1 cut(s)	752
AcoI	YGGCCR	1 cut(s)	129
AcsI	RAATTY	2 cut(s)	85, 707
AcuI	CTGAAG	3 cut(s)	369, 564, 678
AfaI	GTAC	5 cut(s)	326, 373, 803, 859, 896
AfiI	CCNNNNNNNGG	3 cut(s)	39, 76, 321
AflIII	ACRYGT	1 cut(s)	990
AgsI	TTSAA	5 cut(s)	61, 84, 766, 997, 1004
AjnI	CCWGG	1 cut(s)	533
AloI	GAACNNNNNNTCC	2 cut(s)	246, 278
AluBI	AGCT	3 cut(s)	179, 238, 656
AluI	AGCT	3 cut(s)	179, 238, 656
Alw21I	GWGCWC	2 cut(s)	107, 556
Alw26I	GTCTC	1 cut(s)	441
AlwI	GGATC	1 cut(s)	752
AlwNI	CAGNNNCTG	1 cut(s)	35
Ama87I	CYCGRG	1 cut(s)	592
AoxI	GGCC	4 cut(s)	41, 129, 312, 922
ApeKI	GCWGC	1 cut(s)	884
ApoI	RAATTY	2 cut(s)	85, 707
AspS9I	GGNCC	3 cut(s)	41, 537, 922
AsuC2I	CCSGG	2 cut(s)	593, 594
AsuHPI	GGTGA	4 cut(s)	239, 302, 398, 848
AvaI	CYCGRG	1 cut(s)	592
AvaII	GGWCC	1 cut(s)	537
BauI	CACGAG	1 cut(s)	549
Bbv12I	GWGCWC	2 cut(s)	107, 556
BbvCI	CCTCAGC	1 cut(s)	28
BbvI	GCAGC	1 cut(s)	896
BciT130I	CCWGG	1 cut(s)	535
BciVI	GTATCC	1 cut(s)	684
BcnI	CCSGG	2 cut(s)	593, 594
BcoDI	GTCTC	1 cut(s)	441
BfaI	CTAG	1 cut(s)	180
BfuI	GTATCC	1 cut(s)	684
BisI	GCNGC	1 cut(s)	885
BlsI	GCNGC	1 cut(s)	886
Bme1390I	CCNGG	3 cut(s)	535, 593, 594
Bme18I	GGWCC	1 cut(s)	537
BmeT110I	CYCGRG	1 cut(s)	592
BmgT120I	GGNCC	3 cut(s)	41, 537, 922
BmiI	GGNNCC	2 cut(s)	355, 923
BmrFI	CCNGG	3 cut(s)	535, 593, 594
BmsI	GCATC	5 cut(s)	247, 379, 478, 712, 960
BplI	GAGNNNNNCTC	2 cut(s)	279, 311
Bpu10I	CCTNAGC	1 cut(s)	28
BpuEI	CTTGAG	1 cut(s)	931
BpuMI	CCSGG	2 cut(s)	593, 594
BsaAI	YACGTR	1 cut(s)	805
BsaBI	GATNNNNATC	2 cut(s)	393, 399
BsaJI	CCNNGG	3 cut(s)	250, 564, 592
BsaXI	ACNNNNNCTCC	2 cut(s)	246, 276
Bsc4I	CCNNNNNNNGG	3 cut(s)	39, 76, 321
Bse1I	ACTGG	4 cut(s)	218, 471, 514, 692
Bse3DI	GCAATG	1 cut(s)	422
Bse8I	GATNNNNATC	2 cut(s)	393, 399
BseBI	CCWGG	1 cut(s)	535
BseDI	CCNNGG	3 cut(s)	250, 564, 592
BseGI	GGATG	4 cut(s)	103, 189, 727, 747
BseJI	GATNNNNATC	2 cut(s)	393, 399
BseLI	CCNNNNNNNGG	3 cut(s)	39, 76, 321
BseMI	GCAATG	1 cut(s)	422
BseMII	CTCAG	3 cut(s)	30, 42, 638
BseNI	ACTGG	4 cut(s)	218, 471, 514, 692
BseRI	GAGGAG	2 cut(s)	36, 267
BseXI	GCAGC	1 cut(s)	896
Bsh1236I	CGCG	1 cut(s)	55
BshFI	GGCC	4 cut(s)	43, 131, 314, 924
BsiHKAI	GWGCWC	2 cut(s)	107, 556
BsiHKCI	CYCGRG	1 cut(s)	592
BsiSI	CCGG	1 cut(s)	593
BslFI	GGGAC	1 cut(s)	320
BslI	CCNNNNNNNGG	3 cut(s)	39, 76, 321
BsmAI	GTCTC	1 cut(s)	441
BsmFI	GGGAC	1 cut(s)	320
BsnI	GGCC	4 cut(s)	43, 131, 314, 924
BsoBI	CYCGRG	1 cut(s)	592
Bsp1286I	GDGCHC	2 cut(s)	107, 556
Bsp143I	GATC	8 cut(s)	133, 186, 268, 292, 394, 744, 850, 931
BspACI	CCGC	3 cut(s)	55, 597, 919
BspANI	GGCC	4 cut(s)	43, 131, 314, 924
BspCNI	CTCAG	3 cut(s)	29, 41, 639
BspFNI	CGCG	1 cut(s)	55
BspLI	GGNNCC	2 cut(s)	355, 923
BspPI	GGATC	1 cut(s)	752
BsrDI	GCAATG	1 cut(s)	422
BsrI	ACTGG	4 cut(s)	218, 471, 514, 692
BssECI	CCNNGG	3 cut(s)	250, 564, 592
BssMI	GATC	8 cut(s)	133, 186, 268, 292, 394, 744, 850, 931
BssSI	CACGAG	1 cut(s)	549
BssT1I	CCWWGG	1 cut(s)	564
Bst2BI	CACGAG	1 cut(s)	549
Bst2UI	CCWGG	1 cut(s)	535
Bst4CI	ACNGT	2 cut(s)	410, 842
Bst6I	CTCTTC	2 cut(s)	69, 774
BstBAI	YACGTR	1 cut(s)	805
BstC8I	GCNNGC	1 cut(s)	429
BstDEI	CTNAG	3 cut(s)	16, 28, 647
BstEII	GGTNACC	1 cut(s)	842
BstF5I	GGATG	4 cut(s)	103, 189, 727, 747
BstFNI	CGCG	1 cut(s)	55
BstKTI	GATC	8 cut(s)	136, 189, 271, 295, 397, 747, 853, 934
BstMAI	GTCTC	1 cut(s)	441
BstMBI	GATC	8 cut(s)	133, 186, 268, 292, 394, 744, 850, 931
BstMWI	GCNNNNNNNGC	1 cut(s)	560
BstNI	CCWGG	1 cut(s)	535
BstNSI	RCATGY	2 cut(s)	279, 994
BstPI	GGTNACC	1 cut(s)	842
BstSCI	CCNGG	3 cut(s)	533, 591, 592
BstSNI	TACGTA	1 cut(s)	805
BstUI	CGCG	1 cut(s)	55
BstV1I	GCAGC	1 cut(s)	896
BstXI	CCANNNNNNTGG	1 cut(s)	383
BsuI	GTATCC	1 cut(s)	684
BsuRI	GGCC	4 cut(s)	43, 131, 314, 924
BtsCI	GGATG	4 cut(s)	103, 189, 727, 747
BtsIMutI	CAGTG	1 cut(s)	540
Cac8I	GCNNGC	1 cut(s)	429
CaiI	CAGNNNCTG	1 cut(s)	35
Cfr13I	GGNCC	3 cut(s)	41, 537, 922
Cfr9I	CCCGGG	1 cut(s)	592
CseI	GACGC	1 cut(s)	632
Csp6I	GTAC	5 cut(s)	325, 372, 802, 858, 895
CviAII	CATG	3 cut(s)	276, 758, 991
CviQI	GTAC	5 cut(s)	325, 372, 802, 858, 895
DdeI	CTNAG	3 cut(s)	16, 28, 647
DpnI	GATC	8 cut(s)	135, 188, 270, 294, 396, 746, 852, 933
DpnII	GATC	8 cut(s)	133, 186, 268, 292, 394, 744, 850, 931
DraI	TTTAAA	1 cut(s)	198
EaeI	YGGCCR	1 cut(s)	129
Eam1104I	CTCTTC	2 cut(s)	69, 774
EarI	CTCTTC	2 cut(s)	69, 774
EciI	GGCGGA	1 cut(s)	612
Eco105I	TACGTA	1 cut(s)	805
Eco130I	CCWWGG	1 cut(s)	564
Eco47I	GGWCC	1 cut(s)	537
Eco57I	CTGAAG	3 cut(s)	369, 564, 678
Eco88I	CYCGRG	1 cut(s)	592
Eco91I	GGTNACC	1 cut(s)	842
EcoO65I	GGTNACC	1 cut(s)	842
EcoRII	CCWGG	1 cut(s)	533
EcoT14I	CCWWGG	1 cut(s)	564
EcoT22I	ATGCAT	1 cut(s)	975
ErhI	CCWWGG	1 cut(s)	564
FaeI	CATG	3 cut(s)	279, 761, 994
FalI	AAGNNNNNCTT	2 cut(s)	212, 244
FaqI	GGGAC	1 cut(s)	320
FatI	CATG	3 cut(s)	275, 757, 990
FauI	CCCGC	1 cut(s)	912
FblI	GTMKAC	1 cut(s)	684
Fnu4HI	GCNGC	1 cut(s)	885
FokI	GGATG	4 cut(s)	110, 176, 734, 734
Fsp4HI	GCNGC	1 cut(s)	885
FspBI	CTAG	1 cut(s)	180
GluI	GCNGC	1 cut(s)	885
HaeIII	GGCC	4 cut(s)	43, 131, 314, 924
HapII	CCGG	1 cut(s)	593
HgaI	GACGC	1 cut(s)	632
Hin1II	CATG	3 cut(s)	279, 761, 994
HinfI	GANTC	2 cut(s)	80, 937
HpaII	CCGG	1 cut(s)	593
HphI	GGTGA	4 cut(s)	239, 302, 398, 848
Hpy166II	GTNNAC	4 cut(s)	420, 540, 685, 860
Hpy188I	TCNGA	6 cut(s)	19, 186, 715, 855, 868, 936
Hpy188III	TCNNGA	3 cut(s)	164, 266, 910
Hpy8I	GTNNAC	4 cut(s)	420, 540, 685, 860
HpyAV	CCTTC	3 cut(s)	344, 653, 813
HpyCH4III	ACNGT	2 cut(s)	410, 842
HpyCH4IV	ACGT	1 cut(s)	804
HpyCH4V	TGCA	9 cut(s)	119, 146, 275, 431, 491, 507, 526, 830, 973
HpyF10VI	GCNNNNNNNGC	1 cut(s)	560
HpyF3I	CTNAG	3 cut(s)	16, 28, 647
HpySE526I	ACGT	1 cut(s)	804
Hsp92II	CATG	3 cut(s)	279, 761, 994
Kzo9I	GATC	8 cut(s)	133, 186, 268, 292, 394, 744, 850, 931
LmnI	GCTCC	1 cut(s)	359
Lsp1109I	GCAGC	1 cut(s)	896
LweI	GCATC	5 cut(s)	247, 379, 478, 712, 960
MaeI	CTAG	1 cut(s)	180
MaeII	ACGT	1 cut(s)	804
MaeIII	GTNAC	2 cut(s)	836, 842
MalI	GATC	8 cut(s)	135, 188, 270, 294, 396, 746, 852, 933
MboI	GATC	8 cut(s)	133, 186, 268, 292, 394, 744, 850, 931
MboII	GAAGA	7 cut(s)	86, 179, 374, 716, 791, 881, 979
MhlI	GDGCHC	2 cut(s)	107, 556
MluCI	AATT	4 cut(s)	20, 85, 231, 707
MlyI	GAGTC	1 cut(s)	931
Mph1103I	ATGCAT	1 cut(s)	975
MseI	TTAA	5 cut(s)	197, 207, 219, 230, 812
MslI	CAYNNNNRTG	2 cut(s)	141, 381
MspI	CCGG	1 cut(s)	593
MspR9I	CCNGG	3 cut(s)	535, 593, 594
MvaI	CCWGG	1 cut(s)	535
MvnI	CGCG	1 cut(s)	55
MwoI	GCNNNNNNNGC	1 cut(s)	560
NciI	CCSGG	2 cut(s)	593, 594
NdeII	GATC	8 cut(s)	133, 186, 268, 292, 394, 744, 850, 931
NlaIII	CATG	3 cut(s)	279, 761, 994
NlaIV	GGNNCC	2 cut(s)	355, 923
NmuCI	GTSAC	1 cut(s)	836
NsiI	ATGCAT	1 cut(s)	975
NspI	RCATGY	2 cut(s)	279, 994
PciI	ACATGT	1 cut(s)	990
PfeI	GAWTC	1 cut(s)	80
PkrI	GCNGC	1 cut(s)	886
PleI	GAGTC	1 cut(s)	931
PpsI	GAGTC	1 cut(s)	931
Ppu21I	YACGTR	1 cut(s)	805
PscI	ACATGT	1 cut(s)	990
Psp6I	CCWGG	1 cut(s)	533
PspEI	GGTNACC	1 cut(s)	842
PspGI	CCWGG	1 cut(s)	533
PspN4I	GGNNCC	2 cut(s)	355, 923
PspPI	GGNCC	3 cut(s)	41, 537, 922
PstNI	CAGNNNCTG	1 cut(s)	35
RsaI	GTAC	5 cut(s)	326, 373, 803, 859, 896
RsaNI	GTAC	5 cut(s)	325, 372, 802, 858, 895
RseI	CAYNNNNRTG	2 cut(s)	141, 381
SaqAI	TTAA	5 cut(s)	197, 207, 219, 230, 812
SatI	GCNGC	1 cut(s)	885
Sau3AI	GATC	8 cut(s)	133, 186, 268, 292, 394, 744, 850, 931
Sau96I	GGNCC	3 cut(s)	41, 537, 922
SchI	GAGTC	1 cut(s)	931
ScrFI	CCNGG	3 cut(s)	535, 593, 594
SduI	GDGCHC	2 cut(s)	107, 556
SetI	ASST	9 cut(s)	181, 240, 292, 438, 462, 658, 807, 838, 931
SfaNI	GCATC	5 cut(s)	247, 379, 478, 712, 960
SinI	GGWCC	1 cut(s)	537
SmaI	CCCGGG	1 cut(s)	594
SmiMI	CAYNNNNRTG	2 cut(s)	141, 381
SmlI	CTYRAG	1 cut(s)	910
SmoI	CTYRAG	1 cut(s)	910
SnaBI	TACGTA	1 cut(s)	805
SrfI	GCCCGGGC	1 cut(s)	594
Sse9I	AATT	4 cut(s)	20, 85, 231, 707
SsiI	CCGC	3 cut(s)	55, 597, 919
SspI	AATATT	1 cut(s)	319
SspMI	CTAG	1 cut(s)	180
StyD4I	CCNGG	3 cut(s)	533, 591, 592
StyI	CCWWGG	1 cut(s)	564
TaaI	ACNGT	2 cut(s)	410, 842
TaiI	ACGT	1 cut(s)	807
TaqI	TCGA	1 cut(s)	463
TasI	AATT	4 cut(s)	20, 85, 231, 707
TatI	WGTACW	2 cut(s)	857, 894
TfiI	GAWTC	1 cut(s)	80
Tru1I	TTAA	5 cut(s)	197, 207, 219, 230, 812
Tru9I	TTAA	5 cut(s)	197, 207, 219, 230, 812
TscAI	CASTG	1 cut(s)	547
TseFI	GTSAC	1 cut(s)	836
TseI	GCWGC	1 cut(s)	884
Tsp45I	GTSAC	1 cut(s)	836
TspDTI	ATGAA	6 cut(s)	17, 595, 717, 746, 803, 888
TspGWI	ACGGA	1 cut(s)	571
TspMI	CCCGGG	1 cut(s)	592
TspRI	CASTG	1 cut(s)	547
VpaK11BI	GGWCC	1 cut(s)	537
XapI	RAATTY	2 cut(s)	85, 707
XceI	RCATGY	2 cut(s)	279, 994
XmaI	CCCGGG	1 cut(s)	592
XmiI	GTMKAC	1 cut(s)	684
XspI	CTAG	1 cut(s)	180
Zsp2I	ATGCAT	1 cut(s)	975

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.