Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004405

Physical Location & Seq

Genomic Coordinates Forward (+)

23767436 .. 23771797

Gene Structure 4362 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ56136

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

ATGAAACGAGGCTACTCAGAATCGTCCTCAATCGAGGTTCAAAGCCAACCCAGAAGTTTTTTAGATTCAAATTTCTTGGAAGATGAGAGCACAAAGATTTTTGCACGAAAAGTGGCCGATCATTATAGTGCAAGGACAAATCAAACTCTGGAAGAACGAGAAGCTAGTCCGATCATCCATTTAAAAAAACTTAACAACTGGATTAAGAGTGTCTTAATTCAGCTCTATGCTCGCCGAGGAGATGCTGTTCTTGATCTTGCATGCGGCAAGGGAGGTGATCTCATCAAATGGGACAAGGCCAAAATTGGGTACTATGTTGGTATTGATATTGCTGAAGGCTCTATAGAAGATTGTCGTACCCGTTACAATGGTGATGCTGATCATCATCAACGCCGTAAAAAGTTTACATTTCCTGCACGCCTTATCTGTGGAGACTGCTATGAGGTTCAACTGGATAAAGCCCTAGCAGATGATGCACCCTTTGATATTTGCAGTTGCCAGTTTGCCTTGCATTATTCCTGGTCCACTGAAGCACGAGCACGGAGAGCCTTGGCTAATGTTTCAGCCTTACTTCGCCCAGGTGGAACTTTCATTGGAACAATGCCAGACGCTAATGTGATTATCAAAAAGCTGAGAGAAGCTAATGGGAGCATTTTCTCCCTTCTGAAGGCTTATTCTTTGGAAATAGTGTCTACTGGATTTGACGAAGAATTTTTGGAAAAGAAATTTAAGTCGTCAAGCCCCTTTGGTATCAAGTACAAGTTTCATCTTGAGGATGCTGCTGATTGCCCTGAATGGATCGTCCCTTTTCATGTATTCAAATCATTGGTAGAAGAGTATGATATGGAGTTAATTTTTGTGAAGAACTCTCATGAATTTGTGCACGAGTATATGAAAAGACCCGAGTACGTAGAGTTAATGCGGAGGCTTGGTGCATTAGGTGATGGTAACCAATATCAGAGTACACTATCACAAGATGAATGGGAAGTAGCCTATTTGTACTTGTCATTTGTTTTGAGGAAGCGGGGCCAACCTGATCGGACTCAACCAAATGGTAGAAGAGATAAAGGGAAGATGCATATATCAAAAGAGGACATGTTGAACATTGAACATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001510 GO:0003674 GO:0003824 GO:0004482 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005845 GO:0006139 GO:0006370 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008173 GO:0008174 GO:0008757 GO:0009451 GO:0009452 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016556 GO:0016740 GO:0016741 GO:0032259 GO:0032991 GO:0034518 GO:0034641 GO:0036260 GO:0036265 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0080009 GO:0090304 GO:0106005 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

Pox_MCEL

Protein Analysis

371

Amino Acids

42.64

Weight (kDa)

6.61

Isoelectric Point (pI)

50.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
mRNA_G-N7_MeTrfase	PF03291	27 - 342	4.9e-119	mRNA (guanine-N(7))-methyltransferase domain
Methyltransf_31	PF13847	79 - 213	7e-09	Methyltransferase domain
Methyltransf_25	PF13649	83 - 195	1.3e-10	Methyltransferase domain
Methyltransf_12	PF08242	84 - 197	8.8e-10	Methyltransferase domain
Methyltransf_11	PF08241	84 - 198	1.7e-09	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004405)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20650 AT3G20650 AT3G20650
fragaria_vesca	FvH4_3g21511 FvH4_3g21511 FvH4_3g21511 FvH4_6g24821
malus_domestica	MD03G1215400.v1.1 MD11G1013800.v1.1 MD11G1230000.v1.1
prunus_persica	Prupe.4G197400_v2.0.a1
pyrus_communis	pycom03g16380 pycom11g20380
rosa_chinensis	RchiOBHm_Chr1g0332461 RchiOBHm_Chr5g0036961
rosa_laevigata	RLG00000019767 RLG00000029593 RLG00000029668 RLG00000033739
rosa_multiflora	Rmu_sc0000574.1_g000061 Rmu_sc0006147.1_g000007 Rmu_sc0007663.1_g000020 Rmu_sc0024051.1_g000002
rosa_roxburghii	Rroxscaffold_1G00043990 Rroxscaffold_2G00105880
rosa_rugosa	Rorug01G0101300 Rorug05G0159400
rosa_samantha	Rh1DG129900 Rh5DG261500
rosa_wichuraiana	Rw1G010160 Rw1G015570 Rw5G023160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	692
AciI	CCGC	3 cut(s)	264, 922, 1024
AclWI	GGATC	1 cut(s)	806
AcoI	YGGCCR	1 cut(s)	114
AcsI	RAATTY	4 cut(s)	70, 710, 725, 875
AcuI	CTGAAG	3 cut(s)	354, 549, 686
AfaI	GTAC	6 cut(s)	311, 358, 758, 908, 964, 1001
AfiI	CCNNNNNNNGG	2 cut(s)	306, 667
AflIII	ACRYGT	1 cut(s)	1095
AgsI	TTSAA	6 cut(s)	41, 69, 449, 820, 1102, 1109
AjnI	CCWGG	2 cut(s)	518, 577
AloI	GAACNNNNNNTCC	2 cut(s)	231, 263
AluBI	AGCT	4 cut(s)	164, 223, 631, 641
AluI	AGCT	4 cut(s)	164, 223, 631, 641
Alw21I	GWGCWC	3 cut(s)	92, 541, 885
Alw26I	GTCTC	1 cut(s)	426
Alw44I	GTGCAC	1 cut(s)	881
AlwI	GGATC	1 cut(s)	806
Ama87I	CYCGRG	1 cut(s)	902
AoxI	GGCC	3 cut(s)	114, 297, 1027
ApaLI	GTGCAC	1 cut(s)	881
ApeKI	GCWGC	1 cut(s)	779
ApoI	RAATTY	4 cut(s)	70, 710, 725, 875
AspS9I	GGNCC	2 cut(s)	522, 1027
AsuHPI	GGTGA	3 cut(s)	287, 383, 953
AvaI	CYCGRG	1 cut(s)	902
AvaII	GGWCC	1 cut(s)	522
BaeGI	GKGCMC	1 cut(s)	885
BauI	CACGAG	2 cut(s)	534, 884
Bbv12I	GWGCWC	3 cut(s)	92, 541, 885
BbvI	GCAGC	1 cut(s)	766
BccI	CCATC	1 cut(s)	938
BceAI	ACGGC	1 cut(s)	378
BciT130I	CCWGG	2 cut(s)	520, 579
BclI	TGATCA	1 cut(s)	379
BcoDI	GTCTC	1 cut(s)	426
BfaI	CTAG	2 cut(s)	165, 464
BfmI	CTRYAG	1 cut(s)	342
BisI	GCNGC	2 cut(s)	265, 780
BlsI	GCNGC	2 cut(s)	266, 781
Bme1390I	CCNGG	2 cut(s)	520, 579
Bme18I	GGWCC	1 cut(s)	522
BmeT110I	CYCGRG	1 cut(s)	902
BmgT120I	GGNCC	2 cut(s)	522, 1027
BmiI	GGNNCC	1 cut(s)	1028
BmrFI	CCNGG	2 cut(s)	520, 579
BmsI	GCATC	5 cut(s)	232, 364, 463, 766, 1065
BplI	GAGNNNNNCTC	2 cut(s)	264, 296
BpuEI	CTTGAG	1 cut(s)	791
BsaAI	YACGTR	1 cut(s)	910
BsaBI	GATNNNNATC	2 cut(s)	378, 384
BsaJI	CCNNGG	3 cut(s)	235, 549, 577
BsaXI	ACNNNNNCTCC	4 cut(s)	231, 261, 916, 946
Bsc4I	CCNNNNNNNGG	2 cut(s)	306, 667
Bse1I	ACTGG	4 cut(s)	203, 456, 499, 700
Bse8I	GATNNNNATC	2 cut(s)	378, 384
BseBI	CCWGG	2 cut(s)	520, 579
BseDI	CCNNGG	3 cut(s)	235, 549, 577
BseGI	GGATG	2 cut(s)	174, 781
BseJI	GATNNNNATC	2 cut(s)	378, 384
BseLI	CCNNNNNNNGG	2 cut(s)	306, 667
BseMII	CTCAG	2 cut(s)	30, 623
BseNI	ACTGG	4 cut(s)	203, 456, 499, 700
BseRI	GAGGAG	1 cut(s)	252
BseSI	GKGCMC	1 cut(s)	885
BseXI	GCAGC	1 cut(s)	766
BsgI	GTGCAG	1 cut(s)	399
BshFI	GGCC	3 cut(s)	116, 299, 1029
BsiHKAI	GWGCWC	3 cut(s)	92, 541, 885
BsiHKCI	CYCGRG	1 cut(s)	902
BslFI	GGGAC	2 cut(s)	305, 788
BslI	CCNNNNNNNGG	2 cut(s)	306, 667
BsmAI	GTCTC	1 cut(s)	426
BsmFI	GGGAC	2 cut(s)	305, 788
BsnI	GGCC	3 cut(s)	116, 299, 1029
BsoBI	CYCGRG	1 cut(s)	902
Bsp1286I	GDGCHC	3 cut(s)	92, 541, 885
Bsp143I	GATC	7 cut(s)	118, 171, 253, 277, 379, 798, 1036
BspACI	CCGC	3 cut(s)	264, 922, 1024
BspANI	GGCC	3 cut(s)	116, 299, 1029
BspCNI	CTCAG	2 cut(s)	29, 624
BspHI	TCATGA	1 cut(s)	871
BspLI	GGNNCC	1 cut(s)	1028
BspPI	GGATC	1 cut(s)	806
BsrI	ACTGG	4 cut(s)	203, 456, 499, 700
BssECI	CCNNGG	3 cut(s)	235, 549, 577
BssMI	GATC	7 cut(s)	118, 171, 253, 277, 379, 798, 1036
BssSI	CACGAG	2 cut(s)	534, 884
BssT1I	CCWWGG	1 cut(s)	549
Bst2BI	CACGAG	2 cut(s)	534, 884
Bst2UI	CCWGG	2 cut(s)	520, 579
Bst6I	CTCTTC	2 cut(s)	828, 1054
BstAPI	GCANNNNNTGC	1 cut(s)	473
BstBAI	YACGTR	1 cut(s)	910
BstC8I	GCNNGC	3 cut(s)	232, 262, 418
BstDEI	CTNAG	2 cut(s)	16, 632
BstEII	GGTNACC	1 cut(s)	947
BstENI	CCTNNNNNAGG	1 cut(s)	665
BstF5I	GGATG	2 cut(s)	174, 781
BstKTI	GATC	7 cut(s)	121, 174, 256, 280, 382, 801, 1039
BstMAI	GTCTC	1 cut(s)	426
BstMBI	GATC	7 cut(s)	118, 171, 253, 277, 379, 798, 1036
BstMWI	GCNNNNNNNGC	2 cut(s)	473, 545
BstNI	CCWGG	2 cut(s)	520, 579
BstNSI	RCATGY	2 cut(s)	264, 1099
BstPI	GGTNACC	1 cut(s)	947
BstSCI	CCNGG	2 cut(s)	518, 577
BstSFI	CTRYAG	1 cut(s)	342
BstSLI	GKGCMC	1 cut(s)	885
BstSNI	TACGTA	1 cut(s)	910
BstV1I	GCAGC	1 cut(s)	766
BsuRI	GGCC	3 cut(s)	116, 299, 1029
BtsCI	GGATG	2 cut(s)	174, 781
BtsIMutI	CAGTG	1 cut(s)	525
Cac8I	GCNNGC	3 cut(s)	232, 262, 418
CciI	TCATGA	1 cut(s)	871
Cfr13I	GGNCC	2 cut(s)	522, 1027
CseI	GACGC	1 cut(s)	617
Csp6I	GTAC	6 cut(s)	310, 357, 757, 907, 963, 1000
CviAII	CATG	4 cut(s)	261, 812, 872, 1096
CviQI	GTAC	6 cut(s)	310, 357, 757, 907, 963, 1000
DdeI	CTNAG	2 cut(s)	16, 632
DpnI	GATC	7 cut(s)	120, 173, 255, 279, 381, 800, 1038
DpnII	GATC	7 cut(s)	118, 171, 253, 277, 379, 798, 1036
DraI	TTTAAA	1 cut(s)	183
EaeI	YGGCCR	1 cut(s)	114
Eam1104I	CTCTTC	2 cut(s)	828, 1054
EarI	CTCTTC	2 cut(s)	828, 1054
Eco105I	TACGTA	1 cut(s)	910
Eco130I	CCWWGG	1 cut(s)	549
Eco47I	GGWCC	1 cut(s)	522
Eco57I	CTGAAG	3 cut(s)	354, 549, 686
Eco88I	CYCGRG	1 cut(s)	902
Eco91I	GGTNACC	1 cut(s)	947
EcoNI	CCTNNNNNAGG	1 cut(s)	665
EcoO65I	GGTNACC	1 cut(s)	947
EcoRII	CCWGG	2 cut(s)	518, 577
EcoT14I	CCWWGG	1 cut(s)	549
EcoT22I	ATGCAT	1 cut(s)	1080
ErhI	CCWWGG	1 cut(s)	549
FaeI	CATG	4 cut(s)	264, 815, 875, 1099
FalI	AAGNNNNNCTT	2 cut(s)	197, 229
FaqI	GGGAC	2 cut(s)	305, 788
FatI	CATG	4 cut(s)	260, 811, 871, 1095
FauI	CCCGC	1 cut(s)	1017
FbaI	TGATCA	1 cut(s)	379
FblI	GTMKAC	1 cut(s)	692
Fnu4HI	GCNGC	2 cut(s)	265, 780
FokI	GGATG	2 cut(s)	161, 788
Fsp4HI	GCNGC	2 cut(s)	265, 780
FspBI	CTAG	2 cut(s)	165, 464
GluI	GCNGC	2 cut(s)	265, 780
HaeIII	GGCC	3 cut(s)	116, 299, 1029
HgaI	GACGC	1 cut(s)	617
Hin1II	CATG	4 cut(s)	264, 815, 875, 1099
HinfI	GANTC	3 cut(s)	20, 65, 1042
HphI	GGTGA	3 cut(s)	287, 383, 953
Hpy166II	GTNNAC	5 cut(s)	405, 525, 693, 883, 965
Hpy188I	TCNGA	5 cut(s)	19, 171, 666, 960, 1041
Hpy188III	TCNNGA	4 cut(s)	149, 251, 770, 872
Hpy8I	GTNNAC	5 cut(s)	405, 525, 693, 883, 965
HpyAV	CCTTC	3 cut(s)	329, 661, 671
HpyCH4IV	ACGT	1 cut(s)	909
HpyF10VI	GCNNNNNNNGC	2 cut(s)	473, 545
HpyF3I	CTNAG	2 cut(s)	16, 632
HpySE526I	ACGT	1 cut(s)	909
Hsp92II	CATG	4 cut(s)	264, 815, 875, 1099
Ksp22I	TGATCA	1 cut(s)	379
Kzo9I	GATC	7 cut(s)	118, 171, 253, 277, 379, 798, 1036
LmnI	GCTCC	1 cut(s)	648
Lsp1109I	GCAGC	1 cut(s)	766
LweI	GCATC	5 cut(s)	232, 364, 463, 766, 1065
MaeI	CTAG	2 cut(s)	165, 464
MaeII	ACGT	1 cut(s)	909
MaeIII	GTNAC	2 cut(s)	362, 947
MalI	GATC	7 cut(s)	120, 173, 255, 279, 381, 800, 1038
MboI	GATC	7 cut(s)	118, 171, 253, 277, 379, 798, 1036
MboII	GAAGA	8 cut(s)	92, 164, 359, 719, 845, 874, 1071, 1084
MhlI	GDGCHC	3 cut(s)	92, 541, 885
MluCI	AATT	7 cut(s)	70, 216, 303, 710, 725, 852, 875
MlyI	GAGTC	1 cut(s)	1036
MnlI	CCTC	9 cut(s)	28, 37, 230, 266, 436, 766, 918, 1011, 1084
Mph1103I	ATGCAT	1 cut(s)	1080
MseI	TTAA	7 cut(s)	182, 192, 204, 215, 729, 851, 917
MslI	CAYNNNNRTG	1 cut(s)	126
MspR9I	CCNGG	2 cut(s)	520, 579
MvaI	CCWGG	2 cut(s)	520, 579
MwoI	GCNNNNNNNGC	2 cut(s)	473, 545
NdeII	GATC	7 cut(s)	118, 171, 253, 277, 379, 798, 1036
NlaIII	CATG	4 cut(s)	264, 815, 875, 1099
NlaIV	GGNNCC	1 cut(s)	1028
NmeAIII	GCCGAG	1 cut(s)	260
NsiI	ATGCAT	1 cut(s)	1080
NspI	RCATGY	2 cut(s)	264, 1099
PaeI	GCATGC	1 cut(s)	264
PagI	TCATGA	1 cut(s)	871
PciI	ACATGT	1 cut(s)	1095
PfeI	GAWTC	2 cut(s)	20, 65
PkrI	GCNGC	2 cut(s)	266, 781
PleI	GAGTC	1 cut(s)	1036
PpsI	GAGTC	1 cut(s)	1036
Ppu21I	YACGTR	1 cut(s)	910
PscI	ACATGT	1 cut(s)	1095
Psp6I	CCWGG	2 cut(s)	518, 577
PspEI	GGTNACC	1 cut(s)	947
PspGI	CCWGG	2 cut(s)	518, 577
PspN4I	GGNNCC	1 cut(s)	1028
PspPI	GGNCC	2 cut(s)	522, 1027
RsaI	GTAC	6 cut(s)	311, 358, 758, 908, 964, 1001
RsaNI	GTAC	6 cut(s)	310, 357, 757, 907, 963, 1000
RseI	CAYNNNNRTG	1 cut(s)	126
SaqAI	TTAA	7 cut(s)	182, 192, 204, 215, 729, 851, 917
SatI	GCNGC	2 cut(s)	265, 780
Sau3AI	GATC	7 cut(s)	118, 171, 253, 277, 379, 798, 1036
Sau96I	GGNCC	2 cut(s)	522, 1027
SchI	GAGTC	1 cut(s)	1036
ScrFI	CCNGG	2 cut(s)	520, 579
SduI	GDGCHC	3 cut(s)	92, 541, 885
SfaNI	GCATC	5 cut(s)	232, 364, 463, 766, 1065
SfcI	CTRYAG	1 cut(s)	342
SinI	GGWCC	1 cut(s)	522
SmiMI	CAYNNNNRTG	1 cut(s)	126
SmlI	CTYRAG	1 cut(s)	770
SmoI	CTYRAG	1 cut(s)	770
SnaBI	TACGTA	1 cut(s)	910
SphI	GCATGC	1 cut(s)	264
Sse9I	AATT	7 cut(s)	70, 216, 303, 710, 725, 852, 875
SsiI	CCGC	3 cut(s)	264, 922, 1024
SspMI	CTAG	2 cut(s)	165, 464
StyD4I	CCNGG	2 cut(s)	518, 577
StyI	CCWWGG	1 cut(s)	549
TaiI	ACGT	1 cut(s)	912
TaqI	TCGA	1 cut(s)	33
TasI	AATT	7 cut(s)	70, 216, 303, 710, 725, 852, 875
TatI	WGTACW	3 cut(s)	756, 962, 999
TauI	GCSGC	1 cut(s)	267
TfiI	GAWTC	2 cut(s)	20, 65
Tru1I	TTAA	7 cut(s)	182, 192, 204, 215, 729, 851, 917
Tru9I	TTAA	7 cut(s)	182, 192, 204, 215, 729, 851, 917
TscAI	CASTG	1 cut(s)	532
TseI	GCWGC	1 cut(s)	779
TspDTI	ATGAA	7 cut(s)	17, 580, 755, 800, 888, 908, 993
TspGWI	ACGGA	1 cut(s)	556
TspRI	CASTG	1 cut(s)	532
VneI	GTGCAC	1 cut(s)	881
VpaK11BI	GGWCC	1 cut(s)	522
XagI	CCTNNNNNAGG	1 cut(s)	665
XapI	RAATTY	4 cut(s)	70, 710, 725, 875
XceI	RCATGY	2 cut(s)	264, 1099
XmiI	GTMKAC	1 cut(s)	692
XspI	CTAG	2 cut(s)	165, 464
Zsp2I	ATGCAT	1 cut(s)	1080

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.